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Title: Complete genome sequence of Promicromonospora sp. strain Populi, an actinobacterium isolated from Populus trichocarpa rhizosphere

Journal Article · · Microbiology Resource Announcements

Promicromonospora sp. strain Populi is an actinobacterium isolated from the rhizosphere of a black cottonwood tree, Populus trichocarpa. We completely sequenced its 5.2-Mbp chromosome using Oxford Nanopore long reads and predicted it to encode 4,685 proteins, 3 rRNA operons, and 54 tRNAs and noncoding RNAs.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE; USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
2481025
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 12 Vol. 13; ISSN 2576-098X
Publisher:
SSPA - American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (22)

Draft genome sequence of Promicromonospora panici sp. nov., a novel ionizing-radiation-resistant actinobacterium isolated from roots of the desert plant Panicum turgidum journal October 2020
Diversity and bioactive potential of Actinomycetia from the rhizosphere soil of Juniperus excelsa journal March 2023
Gibberellin-producing Promicromonospora sp. SE188 improves Solanum lycopersicum plant growth and influences endogenous plant hormones journal December 2012
Assessment of the rhizosphere fungi and bacteria recruited by sugarcane during smut invasion journal November 2022
Actinomycetes benefaction role in soil and plant health journal October 2017
KBase: The United States Department of Energy Systems Biology Knowledgebase journal July 2018
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries journal November 2018
Assembly of long, error-prone reads using repeat graphs journal April 2019
Time- and memory-efficient genome assembly with Raven journal May 2021
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences journal March 2016
Streptomyces as a plant's best friend? journal June 2016
NCBI prokaryotic genome annotation pipeline journal June 2016
Promicromonospora endophytica sp. nov., an endophytic actinobacterium isolated from the root of an Australian native Grey Box tree journal July 2012
Promicromonospora iranensis sp. nov., an actinobacterium isolated from rhizospheric soil journal September 2014
Promicromonospora callitridis sp. nov., an endophytic actinobacterium isolated from the surface-sterilized root of an Australian native pine tree journal September 2017
Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis journal July 2016
Cultivating the Bacterial Microbiota of Populus Roots journal June 2021
Complete genome sequence of Promicromonospora sp. strain Populi , an actinobacterium isolated from Populus trichocarpa rhizosphere journal December 2024
Trycycler: consensus long-read assemblies for bacterial genomes journal September 2021
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments journal March 2010
Climatic Aridity Gradient Modulates the Diversity of the Rhizosphere and Endosphere Bacterial Microbiomes of Opuntia ficus-indica journal July 2020
Actinobacteria–Plant Interactions in Alleviating Abiotic Stress journal November 2022

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