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SchiefLab/Schiffner2024: v1.0.0
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dataset
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January 2024 |
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MolProbity: More and better reference data for improved all-atom structure validation: PROTEIN SCIENCE.ORG
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journal
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November 2017 |
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Current developments in Coot for macromolecular model building of Electron Cryo‐microscopy and Crystallographic Data
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journal
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UCSF ChimeraX : Structure visualization for researchers, educators, and developers
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journal
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Observed Antibody Space: A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences
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journal
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High‐resolution structure prediction of a circular permutation loop
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Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules
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[20] Processing of X-ray diffraction data collected in oscillation mode
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Development of high potency universal DR-restricted helper epitopes by modification of high affinity DR-blocking peptides
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Somatic Mutations of the Immunoglobulin Framework Are Generally Required for Broad and Potent HIV-1 Neutralization
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Induction of HIV Neutralizing Antibody Lineages in Mice with Diverse Precursor Repertoires
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journal
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September 2016 |
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Sequential Immunization Elicits Broadly Neutralizing Anti-HIV-1 Antibodies in Ig Knockin Mice
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journal
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September 2016 |
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Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance
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journal
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May 2019 |
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Integrated analysis of multimodal single-cell data
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journal
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June 2021 |
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HIV-1 Envelope and MPER Antibody Structures in Lipid Assemblies
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journal
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April 2020 |
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Mapping Neutralizing Antibody Epitope Specificities to an HIV Env Trimer in Immunized and in Infected Rhesus Macaques
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journal
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September 2020 |
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Structural Basis for Broad HIV-1 Neutralization by the MPER-Specific Human Broadly Neutralizing Antibody LN01
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journal
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November 2019 |
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Rare, convergent antibodies targeting the stem helix broadly neutralize diverse betacoronaviruses
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journal
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January 2023 |
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HIV Vaccine Design to Target Germline Precursors of Glycan-Dependent Broadly Neutralizing Antibodies
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journal
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September 2016 |
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Precursor Frequency and Affinity Determine B Cell Competitive Fitness in Germinal Centers, Tested with Germline-Targeting HIV Vaccine Immunogens
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journal
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January 2018 |
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Glycan Masking Focuses Immune Responses to the HIV-1 CD4-Binding Site and Enhances Elicitation of VRC01-Class Precursor Antibodies
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journal
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August 2018 |
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Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual
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journal
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March 2019 |
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Vaccination induces maturation in a mouse model of diverse unmutated VRC01-class precursors to HIV-neutralizing antibodies with >50% breadth
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journal
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February 2021 |
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Rhesus and cynomolgus macaque immunoglobulin heavy-chain genotyping yields comprehensive databases of germline VDJ alleles
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journal
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February 2021 |
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Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors
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journal
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November 2022 |
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Efficient generation of monoclonal antibodies from single human B cells by single cell RT-PCR and expression vector cloning
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journal
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January 2008 |
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Optimization and validation of the TZM-bl assay for standardized assessments of neutralizing antibodies against HIV-1
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journal
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July 2014 |
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Computational Design of Epitope-Scaffolds Allows Induction of Antibodies Specific for a Poorly Immunogenic HIV Vaccine Epitope
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journal
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September 2010 |
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DeGlyPHER: An Ultrasensitive Method for the Analysis of Viral Spike N-Glycoforms
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journal
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October 2021 |
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Site-Specific Steric Control of SARS-CoV-2 Spike Glycosylation
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journal
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July 2021 |
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Broad and potent neutralization of HIV-1 by a gp41-specific human antibody
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journal
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September 2012 |
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Proof of principle for epitope-focused vaccine design
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journal
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February 2014 |
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In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire
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journal
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December 2014 |
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cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
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journal
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February 2017 |
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Isolating and engineering human antibodies using yeast surface display
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journal
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July 2006 |
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Detecting DNA double-stranded breaks in mammalian genomes by linear amplification–mediated high-throughput genome-wide translocation sequencing
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journal
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March 2016 |
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Sequencing and cloning of antigen-specific antibodies from mouse memory B cells
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journal
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September 2016 |
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Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation
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journal
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December 2022 |
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An MPER antibody neutralizes HIV-1 using germline features shared among donors
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journal
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November 2019 |
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Vaccine genetics of IGHV1-2 VRC01-class broadly neutralizing antibody precursor naïve human B cells
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journal
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September 2021 |
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Commonality despite exceptional diversity in the baseline human antibody repertoire
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journal
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January 2019 |
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Broadly neutralizing antibodies target a haemagglutinin anchor epitope
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journal
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Long-primed germinal centres with enduring affinity maturation and clonal migration
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journal
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Recent progress in broadly neutralizing antibodies to HIV
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journal
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October 2018 |
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Macromolecular modeling and design in Rosetta: recent methods and frameworks
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journal
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Structural basis for broad neutralization of HIV-1 through the molecular recognition of 10E8 helical epitope at the membrane interface
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journal
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Evaluation of the mRNA-1273 Vaccine against SARS-CoV-2 in Nonhuman Primates
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journal
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October 2020 |
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Efficacy and Safety of the mRNA-1273 SARS-CoV-2 Vaccine
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Autoreactivity in an HIV-1 broadly reactive neutralizing antibody variable region heavy chain induces immunologic tolerance
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Elicitation of structure-specific antibodies by epitope scaffolds
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journal
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Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires
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journal
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April 2016 |
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journal
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June 2016 |
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A general-purpose protein design framework based on mining sequence–structure relationships in known protein structures
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December 2019 |
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B cells expressing authentic naive human VRC01-class BCRs can be recruited to germinal centers and affinity mature in multiple independent mouse models
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journal
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September 2020 |
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RAG-2-deficient blastocyst complementation: an assay of gene function in lymphocyte development.
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May 1993 |
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Engineering HIV envelope protein to activate germline B cell receptors of broadly neutralizing anti-CD4 binding site antibodies
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journal
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PHENIX: a comprehensive Python-based system for macromolecular structure solution
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Real-space refinement in PHENIX for cryo-EM and crystallography
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Cardiolipin Polyspecific Autoreactivity in Two Broadly Neutralizing HIV-1 Antibodies
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Rational HIV Immunogen Design to Target Specific Germline B Cell Receptors
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HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen
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Innate immune recognition of glycans targets HIV nanoparticle immunogens to germinal centers
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journal
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A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses
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De novo protein design enables the precise induction of RSV-neutralizing antibodies
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Vaccination induces HIV broadly neutralizing antibody precursors in humans
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Potent and broad HIV-neutralizing antibodies in memory B cells and plasma
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A particulate saponin/TLR agonist vaccine adjuvant alters lymph flow and modulates adaptive immunity
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journal
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Neutralizing antibodies to HIV-1 envelope protect more effectively in vivo than those to the CD4 receptor
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journal
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The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen
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journal
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A first-in-human germline-targeting HIV nanoparticle vaccine induced broad and publicly targeted helper T cell responses
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journal
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Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8
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journal
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A Next-Generation Cleaved, Soluble HIV-1 Env Trimer, BG505 SOSIP.664 gp140, Expresses Multiple Epitopes for Broadly Neutralizing but Not Non-Neutralizing Antibodies
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journal
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Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design
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Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates
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Epitope-focused immunogen design based on the ebolavirus glycoprotein HR2-MPER region
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journal
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One‐step CRISPR /Cas9 method for the rapid generation of human antibody heavy chain knock‐in mice
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journal
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Multiplexed CRISPR/CAS9‐mediated engineering of pre‐clinical mouse models bearing native human B cell receptors
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Efficient isolation of rare B cells using next-generation antigen barcoding
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journal
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Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data
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journal
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A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus
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journal
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From Structural Studies to HCV Vaccine Design
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Rescue of HIV-1 Broad Neutralizing Antibody-Expressing B Cells in 2F5 V H × V L Knockin Mice Reveals Multiple Tolerance Controls
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journal
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Common Tolerance Mechanisms, but Distinct Cross-Reactivities Associated with gp41 and Lipids, Limit Production of HIV-1 Broad Neutralizing Antibodies 2F5 and 4E10
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journal
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Immune Tolerance Negatively Regulates B Cells in Knock-In Mice Expressing Broadly Neutralizing HIV Antibody 4E10
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journal
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August 2013 |
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SchiefLab/Schiffner2024: v1.0.0
|
dataset
|
January 2024 |