Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Olson, Robert D.; Assaf, Rida; Brettin, Thomas; Conrad, Neal; Cucinell, Clark; Davis, James J; Dempsey, Donald M; Dickerman, Allan; Dietrich, Emily M; Kenyon, Ronald W; Kuscuoglu, Mehmet; Lefkowitz, Elliot J; Lu, Jian; Machi, Dustin; Macken, Catherine; Mao, Chunhong; Niewiadomska, Anna; Nguyen, Marcus; Olsen, Gary J; Overbeek, Jamie C; Parrello, Bruce; Parrello, Victoria; Porter, Jacob S; Pusch, Gordon D; Shukla, Maulik; Singh, Indresh; Stewart, Lucy; Tan, Gene; Thomas, Chris; VanOeffelen, Margo; Vonstein, Veronika; Wallace, Zachary S; Warren, Andrew S; Wattam, Alice R; Xia, Fangfang; Yoo, Hyunseung; Zhang, Yun; Zmasek, Christian M; Scheuermann, Richard H; Stevens, Rick L

doi:10.1093/nar/gkac1003

Title: Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Journal Article · Wed Nov 09 00:00:00 UTC 2022 · Nucleic Acids Research

DOI: https://doi.org/10.1093/nar/gkac1003 · OSTI ID:2368570

Olson, Robert D. ^[1]; Assaf, Rida ^[2]; Brettin, Thomas ^[1]; Conrad, Neal ^[1]; Cucinell, Clark ^[3];

^[1]; Dempsey, Donald M ^[4];

^[3]; Dietrich, Emily M ^[1]; Kenyon, Ronald W ^[3]; Kuscuoglu, Mehmet ^[5];

^[4]; Lu, Jian ^[6]; Machi, Dustin ^[3]; Macken, Catherine ^[7]; Mao, Chunhong ^[3]; Niewiadomska, Anna ^[5]; Nguyen, Marcus ^[1]; Olsen, Gary J ^[8]; Overbeek, Jamie C ^[1] more »

Univ. of Chicago, IL (United States); Argonne National Laboratory (ANL), Argonne, IL (United States)
American University of Beirut (Lebanon)
Univ. of Virginia, Charlottesville, VA (United States)
Univ. of Alabama, Birmingham, AL (United States)
J. Craig Venter Institute, Inc., La Jolla, CA (United States)
J. Craig Venter Institute, Inc., Rockville, MD (United States)
Univ. of Auckland (New Zealand)
Univ. of Illinois at Urbana-Champaign, IL (United States)
Univ. of Chicago, IL (United States); Fellowship for Interpretation of Genomes, Burr Ridge, IL (United States)
Fellowship for Interpretation of Genomes, Burr Ridge, IL (United States)
Argonne National Laboratory (ANL), Argonne, IL (United States)
Univ. of Alabama, Birmingham, AL (United States); Univ. of California, San Diego, CA (United States)
J. Craig Venter Institute, Inc., La Jolla, CA (United States); Univ. of California, San Diego, CA (United States); La Jolla Institute for Immunology, La Jolla, CA (United States)
Argonne National Laboratory (ANL), Argonne, IL (United States); Univ. of Chicago, IL (United States)

The National Institute of Allergy and Infectious Diseases (NIAID) established the Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the growing body of genome sequence and other omics-related data. In this report, we describe the merger of the PAThosystems Resource Integration Center (PATRIC), the Influenza Research Database (IRD) and the Virus Pathogen Database and Analysis Resource (ViPR) BRCs to form the Bacterial and Viral Bioinformatics Resource Center (BV-BRC) https://www.bv-brc.org/. The combined BV-BRC leverages the functionality of the bacterial and viral resources to provide a unified data model, enhanced web-based visualization and analysis tools, bioinformatics services, and a powerful suite of command line tools that benefit the bacterial and viral research communities.

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Research Organization:: Argonne National Laboratory (ANL), Argonne, IL (United States)

Sponsoring Organization:: National Institutes of Health (NIH), Bethesda, MD (United States); USDOE

Grant/Contract Number:: AC02-06CH11357

OSTI ID:: 2368570

Journal Information:: Nucleic Acids Research, Journal Name: Nucleic Acids Research Journal Issue: D1 Vol. 51; ISSN 0305-1048

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United States

Language:: English

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