DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Chemical control of excited-state reactivity of the anionic green fluorescent protein chromophore

Journal Article · · Communications Chemistry
ORCiD logo [1];  [2]; ORCiD logo [2]
  1. KTH Royal Institute of Technology, Stockholm (Sweden); SLAC
  2. Stanford University, CA (United States); SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States). Photon Ultrafast Laser Science and Engineering Institute (PULSE)

Controlling excited-state reactivity is a long-standing challenge in photochemistry, as a desired pathway may be inaccessible or compete with other unwanted channels. An important example is internal conversion of the anionic green fluorescent protein (GFP) chromophore where non-selective progress along two competing torsional modes (P: phenolate and I: imidazolinone) impairs and enables Z-to-E photoisomerization, respectively. Developing strategies to promote photoisomerization could drive new areas of applications of GFP-like proteins. Motivated by the charge-transfer dichotomy of the torsional modes, we explore chemical substitution on the P-ring of the chromophore as a way to control excited-state pathways and improve photoisomerization. As demonstrated by methoxylation, selective P-twisting appears difficult to achieve because the electron-donating potential effects of the substituents are counteracted by inertial effects that directly retard the motion. Conversely, these effects act in concert to promote I-twisting when introducing electron-withdrawing groups. Specifically, 2,3,5-trifluorination leads to both pathway selectivity and a more direct approach to the I-twisted intersection which, in turn, doubles the photoisomerization quantum yield. Our results suggest P-ring engineering as an effective approach to boost photoisomerization of the anionic GFP chromophore.

Research Organization:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division (CSGB); Villum Foundation; KTH Royal Institute of Technology; National Science Foundation (NSF); Swedish Research Council
Grant/Contract Number:
AC02-76SF00515
OSTI ID:
2322463
Journal Information:
Communications Chemistry, Journal Name: Communications Chemistry Journal Issue: 1 Vol. 7; ISSN 2399-3669
Publisher:
Springer NatureCopyright Statement
Country of Publication:
United States
Language:
English

References (62)

Extraction, Purification and Properties of Aequorin, a Bioluminescent Protein from the Luminous Hydromedusan,Aequorea journal June 1962
BAGEL: Brilliantly Advanced General Electronic-structure Library: BAGEL journal August 2017
Structure of the chromophore of Aequorea green fluorescent protein journal August 1979
Primary structure of the Aequorea victoria green-fluorescent protein journal February 1992
Mechanism of the redox reaction of the Aequorea green fluorescent protein (GFP) journal April 1997
Origin of states connected with twisted intramolecular charge shift in polymethine cations: a simple analytical treatment journal January 1999
The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins journal February 2017
Photoinduced Chemistry in Fluorescent Proteins: Curse or Blessing? journal March 2016
Complexation of Green and Red Kaede Fluorescent Protein Chromophores by a Zwitterion to Probe Electrostatic and Induction Field Effects journal February 2022
Photoinduced Proton Transfer of GFP-Inspired Fluorescent Superphotoacids: Principles and Design journal April 2019
α-CASSCF: An Efficient, Empirical Correction for SA-CASSCF To Closely Approximate MS-CASPT2 Potential Energy Surfaces journal May 2017
A survey of Hammett substituent constants and resonance and field parameters journal March 1991
Quantum Chemistry on Graphical Processing Units. 1. Strategies for Two-Electron Integral Evaluation journal January 2008
Quantum Chemistry on Graphical Processing Units. 2. Direct Self-Consistent-Field Implementation journal March 2009
Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics journal August 2009
Origin, Nature, and Fate of the Fluorescent State of the Green Fluorescent Protein Chromophore at the CASPT2//CASSCF Resolution journal May 2004
Radiationless Decay of Red Fluorescent Protein Chromophore Models via Twisted Intramolecular Charge-Transfer States journal January 2007
Bond Selection in the Photoisomerization Reaction of Anionic Green Fluorescent Protein and Kindling Fluorescent Protein Chromophore Models journal July 2008
Thermodynamics, Kinetics, and Photochemistry of β-Strand Association and Dissociation in a Split-GFP System journal November 2011
Protonic Gating of Excited-State Twisting and Charge Localization in GFP Chromophores: A Mechanistic Hypothesis for Reversible Photoswitching journal February 2010
Origin of the Intrinsic Fluorescence of the Green Fluorescent Protein journal June 2017
Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins journal August 2019
Ultrafast Excited and Ground-State Dynamics of the Green Fluorescent Protein Chromophore in Solution journal May 2004
Ab Initio Molecular Dynamics of Excited-State Intramolecular Proton Transfer Using Multireference Perturbation Theory journal November 2007
Chemically Modulating the Photophysics of the GFP Chromophore journal January 2011
DL-FIND: An Open-Source Geometry Optimizer for Atomistic Simulations journal October 2009
On/off blinking and switching behaviour of single molecules of green fluorescent protein journal July 1997
Diffraction-unlimited all-optical imaging and writing with a photochromic GFP journal September 2011
Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy journal August 2008
Taking the green fluorescence out of the protein: dynamics of the isolated GFP chromophore anion journal January 2013
Mechanism of resonant electron emission from the deprotonated GFP chromophore and its biomimetics journal January 2017
A new twist in the photophysics of the GFP chromophore: a volume-conserving molecular torsion couple journal January 2018
Designing redder and brighter fluorophores by synergistic tuning of ground and excited states journal January 2019
Discovery of conical intersection mediated photochemistry with growing string methods journal January 2018
Shedding light on ultrafast ring-twisting pathways of halogenated GFP chromophores from the excited to ground state journal January 2021
Resolving the ultrafast dynamics of the anionic green fluorescent protein chromophore in water journal January 2021
Internal conversion of the anionic GFP chromophore: in and out of the I-twisted S 1 /S 0 conical intersection seam journal January 2022
Ultrafast excited state dynamics of the green fluorescent protein chromophore and its kindling fluorescent protein analogue journal January 2013
Ultrafast dual photoresponse of isolated biological chromophores: link to the photoinduced mode-specific non-adiabatic dynamics in proteins journal January 2013
A climbing image nudged elastic band method for finding saddle points and minimum energy paths journal December 2000
Comparison of full multiple spawning, trajectory surface hopping, and converged quantum mechanics for electronically nonadiabatic dynamics journal July 2001
A diabatic three-state representation of photoisomerization in the green fluorescent protein chromophore journal January 2009
Conical Intersections, charge localization, and photoisomerization pathway selection in a minimal model of a degenerate monomethine dye journal December 2009
Communication: Extended multi-state complete active space second-order perturbation theory: Energy and nuclear gradients journal August 2011
Approximately diabatic states from block diagonalization of the electronic Hamiltonian journal December 1988
A two-state model of twisted intramolecular charge-transfer in monomethine dyes journal October 2012
Non-adiabatic transition probability dependence on conical intersection topography journal November 2016
TeraChem: Accelerating electronic structure and ab initio molecular dynamics with graphical processing units journal June 2020
Action spectroscopy of the isolated red Kaede fluorescent protein chromophore journal September 2021
Breaking the diffraction barrier in fluorescence microscopy at low light intensities by using reversibly photoswitchable proteins journal November 2005
Chemical nature of the light emitter of the Aequorea green fluorescent protein journal November 1996
Block diagonalisation of Hermitian matrices journal July 1989
Absorption Spectrum of the Green Fluorescent Protein Chromophore Anion In Vacuo journal November 2001
The Fluorescent Toolbox for Assessing Protein Location and Function journal April 2006
Optical Control of Protein Activity by Fluorescent Protein Domains journal November 2012
Crystal Structure of the Aequorea victoria Green Fluorescent Protein journal September 1996
Electrostatic control of photoisomerization pathways in proteins journal January 2020
Split Green Fluorescent Proteins: Scope, Limitations, and Outlook journal May 2019
Dynamics at Conical Intersections journal April 2018
The Green Fluorescent Protein journal June 1998
Photoswitchable Fluorescent Proteins: Mechanisms on Ultrafast Timescales journal June 2022
Chemical Control of Excited-State Reactivity of the Anionic Green Fluorescent Protein Chromophore dataset January 2024