Ground far-red sun-induced chlorophyll fluorescence and vegetation indices in the US Midwestern agroecosystems

Wu, Genghong; Guan, Kaiyu; Kimm, Hyungsuk; Miao, Guofang; Yang, Xi; Jiang, Chongya

doi:10.1038/s41597-024-03004-w

Title: Ground far-red sun-induced chlorophyll fluorescence and vegetation indices in the US Midwestern agroecosystems

Journal Article · 21 February 2024 · Scientific Data

DOI: https://doi.org/10.1038/s41597-024-03004-w · OSTI ID:2311034

; Guan, Kaiyu; Kimm, Hyungsuk; Miao, Guofang;

; Jiang, Chongya

Abstract Sun-induced chlorophyll fluorescence (SIF) provides an opportunity to study terrestrial ecosystem photosynthesis dynamics. However, the current coarse spatiotemporal satellite SIF products are challenging for mechanistic interpretations of SIF signals. Long-term ground SIF and vegetation indices (VIs) are important for satellite SIF validation and mechanistic understanding of the relationship between SIF and photosynthesis when combined with leaf- and canopy-level auxiliary measurements. In this study, we present and analyze a total of 15 site-years of ground far-red SIF (SIF at 760 nm, SIF ₇₆₀ ) and VIs datasets from soybean, corn, and miscanthus grown in the U.S. Corn Belt from 2016 to 2021. We introduce a comprehensive data processing protocol, including different retrieval methods, calibration coefficient adjustment, and nadir SIF footprint upscaling to match the eddy covariance footprint. This long-term ground far-red SIF and VIs dataset provides important and first-hand data for far-red SIF interpretation and understanding the mechanistic relationship between far-red SIF and canopy photosynthesis across various crop species and environmental conditions.

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Sponsoring Organization:: USDOE

Grant/Contract Number:: NONE; AR0001382; SC0018420

OSTI ID:: 2311034

Alternate ID(s):: OSTI ID: 2472286

Journal Information:: Scientific Data, Journal Name: Scientific Data Journal Issue: 1 Vol. 11; ISSN 2052-4463

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United Kingdom

Language:: English

References (65)

Solar-induced chlorophyll fluorescence that correlates with canopy photosynthesis on diurnal and seasonal scales in a temperate deciduous forest: Fluorescence and photosynthesis Yang, Xi; Tang, Jianwu; Mustard, John F. Geophysical Research Letters, Vol. 42, Issue 8 https://doi.org/10.1002/2015GL063201	journal	April 2015
Solar-induced chlorophyll fluorescence is strongly correlated with terrestrial photosynthesis for a wide variety of biomes: First global analysis based on OCO-2 and flux tower observations Li, Xing; Xiao, Jingfeng; He, Binbin Global Change Biology, Vol. 24, Issue 9 https://doi.org/10.1111/gcb.14297	journal	June 2018
Remote estimation of canopy chlorophyll content in crops Gitelson, Anatoly A. Geophysical Research Letters, Vol. 32, Issue 8 https://doi.org/10.1029/2005GL022688	journal	January 2005
A linear method for the retrieval of sun-induced chlorophyll fluorescence from GOME-2 and SCIAMACHY data Köhler, P.; Guanter, L.; Joiner, J. Atmospheric Measurement Techniques, Vol. 8, Issue 6 https://doi.org/10.5194/amt-8-2589-2015	journal	January 2015
Global and time-resolved monitoring of crop photosynthesis with chlorophyll fluorescence Guanter, L.; Zhang, Y.; Jung, M. Proceedings of the National Academy of Sciences, Vol. 111, Issue 14 https://doi.org/10.1073/pnas.1320008111	journal	March 2014
Canopy structure explains the relationship between photosynthesis and sun-induced chlorophyll fluorescence in crops Dechant, Benjamin; Ryu, Youngryel; Badgley, Grayson Remote Sensing of Environment, Vol. 241 https://doi.org/10.1016/j.rse.2020.111733	journal	May 2020
Solar Induced Chlorophyll Fluorescence: Origins, Relation to Photosynthesis and Retrieval Frankenberg, C.; Berry, J. Comprehensive Remote Sensing https://doi.org/10.1016/B978-0-12-409548-9.10632-3	book	November 2017
Canopy structure explains the relationship between photosynthesis and sun-induced chlorophyll fluorescence in crops Dechant, Benjamin; Ryu, Youngryel; Badgley, Grayson https://doi.org/10.31223/OSF.IO/CBXPQ	posted_content	September 2019
A physiological signal derived from sun-induced chlorophyll fluorescence quantifies crop physiological response to environmental stresses in the U.S. Corn Belt Kimm, Hyungsuk; Guan, Kaiyu; Jiang, Chongya Environmental Research Letters, Vol. 16, Issue 12 https://doi.org/10.1088/1748-9326/ac3b16	journal	December 2021
High-Resolution NDVI from Planet’s Constellation of Earth Observing Nano-Satellites: A New Data Source for Precision Agriculture Houborg, Rasmus; McCabe, Matthew Remote Sensing, Vol. 8, Issue 9 https://doi.org/10.3390/rs8090768	journal	September 2016
Quantifying high‐temperature stress on soybean canopy photosynthesis: The unique role of sun‐induced chlorophyll fluorescence Kimm, Hyungsuk; Guan, Kaiyu; Burroughs, Charles H. Global Change Biology, Vol. 27, Issue 11 https://doi.org/10.1111/gcb.15603	journal	April 2021
Global Retrievals of Solar‐Induced Chlorophyll Fluorescence With TROPOMI: First Results and Intersensor Comparison to OCO‐2 Köhler, Philipp; Frankenberg, Christian; Magney, Troy S. Geophysical Research Letters, Vol. 45, Issue 19 https://doi.org/10.1029/2018GL079031	journal	October 2018
Improved Fraunhofer Line Discrimination Method for Vegetation Fluorescence Quantification Alonso, Luis; Gomez-Chova, Luis; Vila-Frances, Joan IEEE Geoscience and Remote Sensing Letters, Vol. 5, Issue 4 https://doi.org/10.1109/LGRS.2008.2001180	journal	October 2008
Canopy near-infrared reflectance and terrestrial photosynthesis Badgley, Grayson; Field, Christopher B.; Berry, Joseph A. Science Advances, Vol. 3, Issue 3 https://doi.org/10.1126/sciadv.1602244	journal	March 2017
New developments in the remote estimation of the fraction of absorbed photosynthetically active radiation in crops: REMOTE ESTIMATION OF FAPAR IN CROPS Viña, Andrés; Gitelson, Anatoly A. Geophysical Research Letters, Vol. 32, Issue 17 https://doi.org/10.1029/2005GL023647	journal	September 2005
Satellite footprint data from OCO-2 and TROPOMI reveal significant spatio-temporal and inter-vegetation type variabilities of solar-induced fluorescence yield in the U.S. Midwest Wang, Cong; Guan, Kaiyu; Peng, Bin Remote Sensing of Environment, Vol. 241 https://doi.org/10.1016/j.rse.2020.111728	journal	May 2020
Estimators of Relative Importance in Linear Regression Based on Variance Decomposition Grömping, Ulrike The American Statistician, Vol. 61, Issue 2 https://doi.org/10.1198/000313007X188252	journal	May 2007
The photochemical reflectance index: an optical indicator of photosynthetic radiation use efficiency across species, functional types, and nutrient levels Gamon, J. A.; Serrano, L.; Surfus, J. S. Oecologia, Vol. 112, Issue 4 https://doi.org/10.1007/s004420050337	journal	November 1997
Global monitoring of terrestrial chlorophyll fluorescence from moderate-spectral-resolution near-infrared satellite measurements: methodology, simulations, and application to GOME-2 Joiner, J.; Guanter, L.; Lindstrot, R. Atmospheric Measurement Techniques, Vol. 6, Issue 10 https://doi.org/10.5194/amt-6-2803-2013	journal	January 2013
FluoSpec 2—An Automated Field Spectroscopy System to Monitor Canopy Solar-Induced Fluorescence Yang, Xi; Shi, Hanyu; Stovall, Atticus Sensors, Vol. 18, Issue 7 https://doi.org/10.3390/s18072063	journal	June 2018
Sun-Induced Chlorophyll Fluorescence, Photosynthesis, and Light Use Efficiency of a Soybean Field from Seasonally Continuous Measurements Miao, Guofang; Guan, Kaiyu; Yang, Xi Journal of Geophysical Research: Biogeosciences, Vol. 123, Issue 2 https://doi.org/10.1002/2017JG004180	journal	February 2018
Attributing differences of solar-induced chlorophyll fluorescence (SIF)-gross primary production (GPP) relationships between two C4 crops: corn and miscanthus Wu, Genghong; Guan, Kaiyu; Jiang, Chongya Agricultural and Forest Meteorology, Vol. 323 https://doi.org/10.1016/j.agrformet.2022.109046	journal	August 2022
From the Ground to Space: Using Solar‐Induced Chlorophyll Fluorescence to Estimate Crop Productivity He, Liyin; Magney, Troy; Dutta, Debsunder Geophysical Research Letters, Vol. 47, Issue 7 https://doi.org/10.1029/2020GL087474	journal	April 2020
Remote sensing of solar-induced chlorophyll fluorescence: Review of methods and applications Meroni, M.; Rossini, M.; Guanter, L. Remote Sensing of Environment, Vol. 113, Issue 10 https://doi.org/10.1016/j.rse.2009.05.003	journal	October 2009
Reduction of structural impacts and distinction of photosynthetic pathways in a global estimation of GPP from space-borne solar-induced chlorophyll fluorescence Zhang, Zhaoying; Zhang, Yongguang; Porcar-Castell, Albert Remote Sensing of Environment, Vol. 240 https://doi.org/10.1016/j.rse.2020.111722	journal	April 2020
Difference in seasonal peak timing of soybean far-red SIF and GPP explained by canopy structure and chlorophyll content Wu, Genghong; Jiang, Chongya; Kimm, Hyungsuk Remote Sensing of Environment, Vol. 279 https://doi.org/10.1016/j.rse.2022.113104	journal	September 2022
Continuous and long-term measurements of reflectance and sun-induced chlorophyll fluorescence by using novel automated field spectroscopy systems Cogliati, S.; Rossini, M.; Julitta, T. Remote Sensing of Environment, Vol. 164 https://doi.org/10.1016/j.rse.2015.03.027	journal	July 2015
Sun-induced chlorophyll fluorescence is more strongly related to absorbed light than to photosynthesis at half-hourly resolution in a rice paddy Yang, Kaige; Ryu, Youngryel; Dechant, Benjamin Remote Sensing of Environment, Vol. 216 https://doi.org/10.1016/j.rse.2018.07.008	journal	October 2018
Directly estimating diurnal changes in GPP for C3 and C4 crops using far-red sun-induced chlorophyll fluorescence Liu, Liangyun; Guan, Linlin; Liu, Xinjie Agricultural and Forest Meteorology, Vol. 232 https://doi.org/10.1016/j.agrformet.2016.06.014	journal	January 2017
SIFSpec: Measuring Solar-Induced Chlorophyll Fluorescence Observations for Remote Sensing of Photosynthesis Du, Shanshan; Liu, Liangyun; Liu, Xinjie Sensors, Vol. 19, Issue 13 https://doi.org/10.3390/s19133009	journal	July 2019
A daily, 250 m, and real-time gross primary productivity product (2000–present) covering the Contiguous United States Jiang, Chongya; Guan, Kaiyu; Wu, Genghong Earth System Science Data (ESSD) https://doi.org/10.5194/essd-2020-36	posted_content	May 2020
Remote sensing of solar-induced chlorophyll fluorescence (SIF) in vegetation: 50 years of progress Mohammed, Gina H.; Colombo, Roberto; Middleton, Elizabeth M. Remote Sensing of Environment, Vol. 231 https://doi.org/10.1016/j.rse.2019.04.030	journal	September 2019
Chlorophyll fluorescence—a practical guide Maxwell, Kate; Johnson, Giles N. Journal of Experimental Botany, Vol. 51, Issue 345 https://doi.org/10.1093/jexbot/51.345.659	journal	April 2000
Varying Contributions of Drivers to the Relationship Between Canopy Photosynthesis and Far‐Red Sun‐Induced Fluorescence for Two Maize Sites at Different Temporal Scales Miao, Guofang; Guan, Kaiyu; Suyker, Andrew E. Journal of Geophysical Research: Biogeosciences, Vol. 125, Issue 2 https://doi.org/10.1029/2019JG005051	journal	February 2020
Solar-induced chlorophyll fluorescence and its link to canopy photosynthesis in maize from continuous ground measurements Li, Zhaohui; Zhang, Qian; Li, Ji Remote Sensing of Environment, Vol. 236 https://doi.org/10.1016/j.rse.2019.111420	journal	January 2020
Multi-sensor spectral synergies for crop stress detection and monitoring in the optical domain: A review Berger, Katja; Machwitz, Miriam; Kycko, Marlena Remote Sensing of Environment, Vol. 280 https://doi.org/10.1016/j.rse.2022.113198	journal	October 2022
New global observations of the terrestrial carbon cycle from GOSAT: Patterns of plant fluorescence with gross primary productivity: CHLOROPHYLL FLUORESCENCE FROM SPACE Frankenberg, Christian; Fisher, Joshua B.; Worden, John Geophysical Research Letters, Vol. 38, Issue 17 https://doi.org/10.1029/2011GL048738	journal	September 2011
Advancing Terrestrial Ecosystem Science With a Novel Automated Measurement System for Sun‐Induced Chlorophyll Fluorescence for Integration With Eddy Covariance Flux Networks Gu, L.; Wood, J. D.; Chang, C. Y. ‐Y. Journal of Geophysical Research: Biogeosciences, Vol. 124, Issue 1 https://doi.org/10.1029/2018JG004742	journal	January 2019
Chlorophyll fluorescence analysis: a guide to good practice and understanding some new applications Murchie, E. H.; Lawson, T. Journal of Experimental Botany, Vol. 64, Issue 13 https://doi.org/10.1093/jxb/ert208	journal	August 2013
Representativeness of Eddy-Covariance flux footprints for areas surrounding AmeriFlux sites Chu, Housen; Luo, Xiangzhong; Ouyang, Zutao Agricultural and Forest Meteorology, Vol. 301-302 https://doi.org/10.1016/j.agrformet.2021.108350	journal	May 2021
Unraveling the physical and physiological basis for the solar- induced chlorophyll fluorescence and photosynthesis relationship using continuous leaf and canopy measurements of a corn crop Yang, Peiqi; van der Tol, Christiaan; Campbell, Petya K. E. Biogeosciences, Vol. 18, Issue 2 https://doi.org/10.5194/bg-18-441-2021	journal	January 2021
Sun-Induced Chlorophyll Fluorescence II: Review of Passive Measurement Setups, Protocols, and Their Application at the Leaf to Canopy Level Aasen, Helge; Van Wittenberghe, Shari; Medina, Neus Sabater Remote Sensing, Vol. 11, Issue 8, p. 927 https://doi.org/10.3390/rs11080927	journal	April 2019
Satellite sun-induced chlorophyll fluorescence detects early response of winter wheat to heat stress in the Indian Indo-Gangetic Plains Song, Lian; Guanter, Luis; Guan, Kaiyu Global Change Biology, Vol. 24, Issue 9 https://doi.org/10.1111/gcb.14302	journal	June 2018
Improving the monitoring of crop productivity using spaceborne solar-induced fluorescence Guan, Kaiyu; Berry, Joseph A.; Zhang, Yongguang Global Change Biology, Vol. 22, Issue 2 https://doi.org/10.1111/gcb.13136	journal	November 2015
Comparison of Bi-Hemispherical and Hemispherical-Conical Configurations for In Situ Measurements of Solar-Induced Chlorophyll Fluorescence Zhang, Qian; Zhang, Xiaokang; Li, Zhaohui Remote Sensing, Vol. 11, Issue 22, p. 2642 https://doi.org/10.3390/rs11222642	journal	November 2019
Linking chlorophyll a fluorescence to photosynthesis for remote sensing applications: mechanisms and challenges Porcar-Castell, Albert; Tyystjärvi, Esa; Atherton, Jon Journal of Experimental Botany, Vol. 65, Issue 15 https://doi.org/10.1093/jxb/eru191	journal	May 2014
Assessing the eddy covariance technique for evaluating carbon dioxide exchange rates of ecosystems: past, present and future Baldocchi, Dennis D. Global Change Biology, Vol. 9, Issue 4 https://doi.org/10.1046/j.1365-2486.2003.00629.x	journal	April 2003
A comparison of vegetation indices over a global set of TM images for EOS-MODIS Huete, A. Remote Sensing of Environment, Vol. 59, Issue 3 https://doi.org/10.1016/S0034-4257(96)00112-5	journal	March 1997
A practical approach for estimating the escape ratio of near-infrared solar-induced chlorophyll fluorescence Zeng, Yelu; Badgley, Grayson; Dechant, Benjamin Remote Sensing of Environment, Vol. 232 https://doi.org/10.1016/j.rse.2019.05.028	journal	October 2019
Effect of environmental conditions on sun-induced fluorescence in a mixed forest and a cropland Paul-Limoges, Eugénie; Damm, Alexander; Hueni, Andreas Remote Sensing of Environment, Vol. 219 https://doi.org/10.1016/j.rse.2018.10.018	journal	December 2018
SIF and Vegetation Indices in the US Midwestern Agroecosystems, 2016-2021 Wu, G.; Guan, K.; Kimm, H. ORNL Distributed Active Archive Center https://doi.org/10.3334/ORNLDAAC/2136	collection	January 2023
Spectral Network (SpecNet)—What is it and why do we need it? Gamon, J.; Rahman, A.; Dungan, J. Remote Sensing of Environment, Vol. 103, Issue 3 https://doi.org/10.1016/j.rse.2006.04.003	journal	August 2006
Sun-Induced Chlorophyll Fluorescence I: Instrumental Considerations for Proximal Spectroradiometers Remote Sensing, Vol. 11, Issue 8 https://doi.org/10.3390/rs11080960	journal	April 2019
Chlorophyll a fluorescence illuminates a path connecting plant molecular biology to Earth-system science Porcar-Castell, Albert; Malenovský, Zbyněk; Magney, Troy Nature Plants, Vol. 7, Issue 8 https://doi.org/10.1038/s41477-021-00980-4	journal	August 2021
Miscanthus: A Promising Biomass Crop Heaton, Emily A.; Dohleman, Frank G.; Miguez, A. Fernando Advances in Botanical Research https://doi.org/10.1016/B978-0-12-381518-7.00003-0	book	January 2010
Sun-Induced Chlorophyll Fluorescence III: Benchmarking Retrieval Methods and Sensor Characteristics for Proximal Sensing Cendrero-Mateo, M. Pilar; Wieneke, Sebastian; Damm, Alexander Remote Sensing, Vol. 11, Issue 8, p. 962 https://doi.org/10.3390/rs11080962	journal	April 2019
Chlorophyll Fluorescence: A Probe of Photosynthesis In Vivo Baker, Neil R. Annual Review of Plant Biology, Vol. 59, Issue 1 https://doi.org/10.1146/annurev.arplant.59.032607.092759	journal	June 2008
Can upscaling ground nadir SIF to eddy covariance footprint improve the relationship between SIF and GPP in croplands? Wu, Genghong; Guan, Kaiyu; Jiang, Chongya Agricultural and Forest Meteorology, Vol. 338 https://doi.org/10.1016/j.agrformet.2023.109532	journal	July 2023
PhotoSpec: A new instrument to measure spatially distributed red and far-red Solar-Induced Chlorophyll Fluorescence Grossmann, Katja; Frankenberg, Christian; Magney, Troy S. Remote Sensing of Environment, Vol. 216 https://doi.org/10.1016/j.rse.2018.07.002	journal	October 2018
Assessing Tower Flux Footprint Climatology and Scaling Between Remotely Sensed and Eddy Covariance Measurements Chen, Baozhang; Black, T. Andrew; Coops, Nicholas C. Boundary-Layer Meteorology, Vol. 130, Issue 2 https://doi.org/10.1007/s10546-008-9339-1	journal	December 2008
OCO-2 advances photosynthesis observation from space via solar-induced chlorophyll fluorescence Sun, Y.; Frankenberg, C.; Wood, J. D. Science, Vol. 358, Issue 6360 https://doi.org/10.1126/science.aam5747	journal	October 2017
ChinaSpec: A Network for Long‐Term Ground‐Based Measurements of Solar‐Induced Fluorescence in China Zhang, Yongguang; Zhang, Qian; Liu, Liangyun Journal of Geophysical Research: Biogeosciences, Vol. 126, Issue 3 https://doi.org/10.1029/2020JG006042	journal	March 2021
Drought onset mechanisms revealed by satellite solar-induced chlorophyll fluorescence: Insights from two contrasting extreme events: FLUORESCENCE AND DYNAMIC DROUGHT MONITOR Sun, Ying; Fu, Rong; Dickinson, Robert Journal of Geophysical Research: Biogeosciences, Vol. 120, Issue 11 https://doi.org/10.1002/2015JG003150	journal	November 2015
NIRVP: A robust structural proxy for sun-induced chlorophyll fluorescence and photosynthesis across scales Dechant, Benjamin; Ryu, Youngryel; Badgley, Grayson Remote Sensing of Environment, Vol. 268 https://doi.org/10.1016/j.rse.2021.112763	journal	January 2022
EUROSPEC: at the interface between remote-sensing and ecosystem CO ₂ flux measurements in Europe Porcar-Castell, A.; Mac Arthur, A.; Rossini, M. Biogeosciences, Vol. 12, Issue 20 https://doi.org/10.5194/bg-12-6103-2015	journal	January 2015

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