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Title: A temporal analysis and response to nitrate availability of 3D root system architecture in diverse pennycress (Thlaspi arvense L.) accessions

Abstract

Introduction Roots have a central role in plant resource capture and are the interface between the plant and the soil that affect multiple ecosystem processes. Field pennycress ( Thlaspi arvense L.) is a diploid annual cover crop species that has potential utility for reducing soil erosion and nutrient losses; and has rich seeds (30-35% oil) amenable to biofuel production and as a protein animal feed. The objective of this research was to (1) precisely characterize root system architecture and development, (2) understand plastic responses of pennycress roots to nitrate nutrition, (3) and determine genotypic variance available in root development and nitrate plasticity. Methods Using a root imaging and analysis pipeline, the 4D architecture of the pennycress root system was characterized under four nitrate regimes, ranging from zero to high nitrate concentrations. These measurements were taken at four time points (days 5, 9, 13, and 17 after sowing). Results Significant nitrate condition response and genotype interactions were identified for many root traits, with the greatest impact observed on lateral root traits. In trace nitrate conditions, a greater lateral root count, length, density, and a steeper lateral root angle was observed compared to high nitrate conditions. Additionally, genotype-by-nitrate condition interaction was observedmore » for root width, width:depth ratio, mean lateral root length, and lateral root density. Discussion These findings illustrate root trait variance among pennycress accessions. These traits could serve as targets for breeding programs aimed at developing improved cover crops that are responsive to nitrate, leading to enhanced productivity, resilience, and ecosystem service.« less

Authors:
; ; ; ; ;
Publication Date:
Research Org.:
Donald Danforth Plant Science Center, St. Louis, MO (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1986394
Alternate Identifier(s):
OSTI ID: 1992058
Grant/Contract Number:  
SC0021286
Resource Type:
Published Article
Journal Name:
Frontiers in Plant Science
Additional Journal Information:
Journal Name: Frontiers in Plant Science Journal Volume: 14; Journal ID: ISSN 1664-462X
Publisher:
Frontiers Media SA
Country of Publication:
Switzerland
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; root system architecture; nitrate; plasticity; abiotic stress; phenotyping; cover crop; field pennycress; ecosystem service

Citation Formats

Griffiths, Marcus, Liu, Alexander E., Gunn, Shayla L., Mutan, Nida M., Morales, Elisa Y., and Topp, Christopher N. A temporal analysis and response to nitrate availability of 3D root system architecture in diverse pennycress (Thlaspi arvense L.) accessions. Switzerland: N. p., 2023. Web. doi:10.3389/fpls.2023.1145389.
Griffiths, Marcus, Liu, Alexander E., Gunn, Shayla L., Mutan, Nida M., Morales, Elisa Y., & Topp, Christopher N. A temporal analysis and response to nitrate availability of 3D root system architecture in diverse pennycress (Thlaspi arvense L.) accessions. Switzerland. https://doi.org/10.3389/fpls.2023.1145389
Griffiths, Marcus, Liu, Alexander E., Gunn, Shayla L., Mutan, Nida M., Morales, Elisa Y., and Topp, Christopher N. Thu . "A temporal analysis and response to nitrate availability of 3D root system architecture in diverse pennycress (Thlaspi arvense L.) accessions". Switzerland. https://doi.org/10.3389/fpls.2023.1145389.
@article{osti_1986394,
title = {A temporal analysis and response to nitrate availability of 3D root system architecture in diverse pennycress (Thlaspi arvense L.) accessions},
author = {Griffiths, Marcus and Liu, Alexander E. and Gunn, Shayla L. and Mutan, Nida M. and Morales, Elisa Y. and Topp, Christopher N.},
abstractNote = {Introduction Roots have a central role in plant resource capture and are the interface between the plant and the soil that affect multiple ecosystem processes. Field pennycress ( Thlaspi arvense L.) is a diploid annual cover crop species that has potential utility for reducing soil erosion and nutrient losses; and has rich seeds (30-35% oil) amenable to biofuel production and as a protein animal feed. The objective of this research was to (1) precisely characterize root system architecture and development, (2) understand plastic responses of pennycress roots to nitrate nutrition, (3) and determine genotypic variance available in root development and nitrate plasticity. Methods Using a root imaging and analysis pipeline, the 4D architecture of the pennycress root system was characterized under four nitrate regimes, ranging from zero to high nitrate concentrations. These measurements were taken at four time points (days 5, 9, 13, and 17 after sowing). Results Significant nitrate condition response and genotype interactions were identified for many root traits, with the greatest impact observed on lateral root traits. In trace nitrate conditions, a greater lateral root count, length, density, and a steeper lateral root angle was observed compared to high nitrate conditions. Additionally, genotype-by-nitrate condition interaction was observed for root width, width:depth ratio, mean lateral root length, and lateral root density. Discussion These findings illustrate root trait variance among pennycress accessions. These traits could serve as targets for breeding programs aimed at developing improved cover crops that are responsive to nitrate, leading to enhanced productivity, resilience, and ecosystem service.},
doi = {10.3389/fpls.2023.1145389},
journal = {Frontiers in Plant Science},
number = ,
volume = 14,
place = {Switzerland},
year = {Thu Jun 22 00:00:00 EDT 2023},
month = {Thu Jun 22 00:00:00 EDT 2023}
}

Works referenced in this record:

Characterization, costs, cues and future perspectives of phenotypic plasticity
journal, June 2022


Genetic Diversity of Field Pennycress (Thlaspi arvense) Reveals Untapped Variability and Paths Toward Selection for Domestication
journal, June 2019


Three-Dimensional Time-Lapse Analysis Reveals Multiscale Relationships in Maize Root Systems with Contrasting Architectures
journal, May 2019


Comprehensive Genome-Wide Association Analysis Reveals the Genetic Basis of Root System Architecture in Soybean
journal, December 2020

  • Seck, Waldiodio; Torkamaneh, Davoud; Belzile, François
  • Frontiers in Plant Science, Vol. 11
  • DOI: 10.3389/fpls.2020.590740

How can we harness quantitative genetic variation in crop root systems for agricultural improvement?: Quantifying root architecture for crops
journal, March 2016

  • Topp, Christopher N.; Bray, Adam L.; Ellis, Nathanael A.
  • Journal of Integrative Plant Biology, Vol. 58, Issue 3
  • DOI: 10.1111/jipb.12470

DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots
journal, June 2015


Detection of T. urartu Introgressions in Wheat and Development of a Panel of Interspecific Introgression Lines
journal, October 2018

  • Grewal, Surbhi; Hubbart-Edwards, Stella; Yang, Caiyun
  • Frontiers in Plant Science, Vol. 9
  • DOI: 10.3389/fpls.2018.01565

3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture
journal, April 2013

  • Topp, C. N.; Iyer-Pascuzzi, A. S.; Anderson, J. T.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 18
  • DOI: 10.1073/pnas.1304354110

PlantCV v2: Image analysis software for high-throughput plant phenotyping
journal, January 2017


Plant roots use a patterning mechanism to position lateral root branches toward available water
journal, June 2014

  • Bao, Y.; Aggarwal, P.; Robbins, N. E.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 25
  • DOI: 10.1073/pnas.1400966111

Root system size and root hair length are key phenes for nitrate acquisition and biomass production across natural variation in Arabidopsis
journal, March 2022

  • De Pessemier, Jérôme; Moturu, Taraka Ramji; Nacry, Philippe
  • Journal of Experimental Botany, Vol. 73, Issue 11
  • DOI: 10.1093/jxb/erac118

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
journal, January 2021


Identification and stacking of crucial traits required for the domestication of pennycress
journal, January 2020


Biopore-Induced Deep Root Traits of Two Winter Crops
journal, December 2020


Can precrops uplift subsoil nutrients to topsoil?
journal, March 2021


Using Ancient Traits to Convert Soil Health into Crop Yield: Impact of Selection on Maize Root and Rhizosphere Function
journal, March 2016

  • Schmidt, Jennifer E.; Bowles, Timothy M.; Gaudin, Amélie C. M.
  • Frontiers in Plant Science, Vol. 7
  • DOI: 10.3389/fpls.2016.00373

Domestication and Crop Physiology: Roots of Green-Revolution Wheat
journal, July 2007


Optimisation of root traits to provide enhanced ecosystem services in agricultural systems: A focus on cover crops
journal, January 2022

  • Griffiths, Marcus; Delory, Benjamin M.; Jawahir, Vanessica
  • Plant, Cell & Environment, Vol. 45, Issue 3
  • DOI: 10.1111/pce.14247

Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform
journal, March 2011

  • Clark, Randy T.; MacCurdy, Robert B.; Jung, Janelle K.
  • Plant Physiology, Vol. 156, Issue 2
  • DOI: 10.1104/pp.110.169102

Perceptions and use of cover crops among early adopters: Findings from a national survey
journal, January 2016

  • Dunn, M.; Ulrich-Schad, J. D.; Prokopy, L. S.
  • Journal of Soil and Water Conservation, Vol. 71, Issue 1
  • DOI: 10.2489/jswc.71.1.29

The genetic architecture of teosinte catalyzed and constrained maize domestication
journal, March 2019

  • Yang, Chin Jian; Samayoa, Luis Fernando; Bradbury, Peter J.
  • Proceedings of the National Academy of Sciences, Vol. 116, Issue 12
  • DOI: 10.1073/pnas.1820997116

Maize root growth angles become steeper under low N conditions
journal, January 2013


Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat
journal, March 2015

  • Atkinson, Jonathan A.; Wingen, Luzie U.; Griffiths, Marcus
  • Journal of Experimental Botany, Vol. 66, Issue 8
  • DOI: 10.1093/jxb/erv006

A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements
journal, October 2021

  • Freschet, Grégoire T.; Pagès, Loïc; Iversen, Colleen M.
  • New Phytologist, Vol. 232, Issue 3
  • DOI: 10.1111/nph.17572

New approaches to facilitate rapid domestication of a wild plant to an oilseed crop: Example pennycress (Thlaspi arvense L.)
journal, October 2014


Ecological and evolutionary approaches to improving crop variety mixtures
journal, July 2021


X‐ray CT reveals 4D root system development and lateral root responses to nitrate in soil
journal, January 2022

  • Griffiths, Marcus; Mellor, Nathan; Sturrock, Craig J.
  • The Plant Phenome Journal, Vol. 5, Issue 1
  • DOI: 10.1002/ppj2.20036

Impact of plant roots on the resistance of soils to erosion by water: a review
journal, June 2005

  • Gyssels, G.; Poesen, J.; Bochet, E.
  • Progress in Physical Geography: Earth and Environment, Vol. 29, Issue 2
  • DOI: 10.1191/0309133305pp443ra

GiA Roots: software for the high throughput analysis of plant root system architecture
journal, January 2012

  • Galkovskyi, Taras; Mileyko, Yuriy; Bucksch, Alexander
  • BMC Plant Biology, Vol. 12, Issue 1
  • DOI: 10.1186/1471-2229-12-116

A novel morphological response of maize (Zea mays) adult roots to heterogeneous nitrate supply revealed by a split-root experiment
journal, June 2013

  • Yu, Peng; Li, Xuexian; Yuan, Lixing
  • Physiologia Plantarum, Vol. 150, Issue 1
  • DOI: 10.1111/ppl.12075

Genetic diversity for root plasticity and nitrogen uptake in wheat seedlings
journal, January 2015

  • Melino, Vanessa J.; Fiene, Gabriele; Enju, Akiko
  • Functional Plant Biology, Vol. 42, Issue 10
  • DOI: 10.1071/FP15041

A RootNav analysis of morphological changes in Brassica napus L. roots in response to different nitrogen forms
journal, May 2017


Interactions among rooting traits for deep water and nitrogen uptake in upland and lowland ecotypes of switchgrass (Panicum virgatum L.)
journal, October 2021

  • Griffiths, Marcus; Wang, Xueyan; Dhakal, Kundan
  • Journal of Experimental Botany, Vol. 73, Issue 3
  • DOI: 10.1093/jxb/erab437

From lab to field, new approaches to phenotyping root system architecture
journal, June 2011

  • Zhu, Jinming; Ingram, Paul A.; Benfey, Philip N.
  • Current Opinion in Plant Biology, Vol. 14, Issue 3
  • DOI: 10.1016/j.pbi.2011.03.020

A draft genome of field pennycress (Thlaspi arvense) provides tools for the domestication of a new winter biofuel crop
journal, January 2015