Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics

Healey, Adam L.; Piatkowski, Bryan; Lovell, John T.; Sreedasyam, Avinash; Carey, Sarah B.; Mamidi, Sujan; Shu, Shengqiang; Plott, Chris; Jenkins, Jerry; Lawrence, Travis; Aguero, Blanka; Carrell, Alyssa A.; Nieto-Lugilde, Marta; Talag, Jayson; Duffy, Aaron; Jawdy, Sara; Carter, Kelsey R.; Boston, Lori-Beth; Jones, Teresa; Jaramillo-Chico, Juan; Harkess, Alex; Barry, Kerrie; Keymanesh, Keykhosrow; Bauer, Diane; Grimwood, Jane; Gunter, Lee; Schmutz, Jeremy; Weston, David J.; Shaw, A. Jonathan

doi:10.1038/s41477-022-01333-5

Title: Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics

Journal Article · Mon Feb 06 00:00:00 UTC 2023 · Nature Plants (Online)

DOI: https://doi.org/10.1038/s41477-022-01333-5 · OSTI ID:1959595

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^[2]; Aguero, Blanka ^[6]; Carrell, Alyssa A. ^[2];

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HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States); USDOE Joint Genome Institute (JGI), Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States); Auburn Univ., AL (United States)
USDOE Joint Genome Institute (JGI), Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Duke Univ., Durham, NC (United States)
Univ. of Arizona, Tucson, AZ (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

Peatlands are crucial sinks for atmospheric carbon but are critically threatened due to warming climates. Sphagnum (peat moss) species are keystone members of peatland communities where they actively engineer hyperacidic conditions, which improves their competitive advantage and accelerates ecosystem-level carbon sequestration. To dissect the molecular and physiological sources of this unique biology, we generated chromosome-scale genomes of two Sphagnum species: S. divinum and S. angustifolium. Sphagnum genomes show no gene colinearity with any other reference genome to date, demonstrating that Sphagnum represents an unsampled lineage of land plant evolution. The genomes also revealed an average recombination rate an order of magnitude higher than vascular land plants and short putative U/V sex chromosomes. These newly described sex chromosomes interact with autosomal loci that significantly impact growth across diverse pH conditions. This discovery demonstrates that the ability of Sphagnum to sequester carbon in acidic peat bogs is mediated by interactions between sex, autosomes and environment.

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Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization:: National Science Foundation (NSF); USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231; AC05-00OR22725

OSTI ID:: 1959595

Journal Information:: Nature Plants (Online), Journal Name: Nature Plants (Online) Journal Issue: 2 Vol. 9; ISSN 2055-0278

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees Mai, Uyen; Mirarab, Siavash figshare https://doi.org/10.6084/m9.figshare.c.4093730.v1	collection	January 2018
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