[FeFe]‐Hydrogenase: Defined Lysate‐Free Maturation Reveals a Key Role for Lipoyl‐H‐Protein in DTMA Ligand Biosynthesis
Abstract
Abstract Maturation of [FeFe]‐hydrogenase (HydA) involves synthesis of a CO, CN − , and dithiomethylamine (DTMA)‐coordinated 2Fe subcluster that is inserted into HydA to make the active hydrogenase. This process requires three maturation enzymes: the radical S‐adenosyl‐ l ‐methionine (SAM) enzymes HydE and HydG, and the GTPase HydF. In vitro maturation with purified maturation enzymes has been possible only when clarified cell lysate was added, with the lysate presumably providing essential components for DTMA synthesis and delivery. Here we report maturation of [FeFe]‐hydrogenase using a fully defined system that includes components of the glycine cleavage system (GCS), but no cell lysate. Our results reveal for the first time an essential role for the aminomethyl‐lipoyl‐H‐protein of the GCS in hydrogenase maturation and the synthesis of the DTMA ligand of the H‐cluster. In addition, we show that ammonia is the source of the bridgehead nitrogen of DTMA.
- Authors:
-
- Department of Chemistry &, Biochemistry Montana State University Bozeman MT 59717 USA
- Department of Chemistry Northwestern University Evanston IL 60208 USA
- Department of Chemistry The Pennsylvania State University University Park PA 16802 USA
- Department of Chemistry The Pennsylvania State University University Park PA 16802 USA, Howard Hughes Medical Institute Chevy Chase MD 20815 USA
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1862893
- Resource Type:
- Publisher's Accepted Manuscript
- Journal Name:
- Angewandte Chemie
- Additional Journal Information:
- Journal Name: Angewandte Chemie Journal Volume: 134 Journal Issue: 22; Journal ID: ISSN 0044-8249
- Publisher:
- Wiley Blackwell (John Wiley & Sons)
- Country of Publication:
- Germany
- Language:
- English
Citation Formats
Pagnier, Adrien, Balci, Batuhan, Shepard, Eric M., Yang, Hao, Warui, Douglas M., Impano, Stella, Booker, Squire J., Hoffman, Brian M., Broderick, William E., and Broderick, Joan B. [FeFe]‐Hydrogenase: Defined Lysate‐Free Maturation Reveals a Key Role for Lipoyl‐H‐Protein in DTMA Ligand Biosynthesis. Germany: N. p., 2022.
Web. doi:10.1002/ange.202203413.
Pagnier, Adrien, Balci, Batuhan, Shepard, Eric M., Yang, Hao, Warui, Douglas M., Impano, Stella, Booker, Squire J., Hoffman, Brian M., Broderick, William E., & Broderick, Joan B. [FeFe]‐Hydrogenase: Defined Lysate‐Free Maturation Reveals a Key Role for Lipoyl‐H‐Protein in DTMA Ligand Biosynthesis. Germany. https://doi.org/10.1002/ange.202203413
Pagnier, Adrien, Balci, Batuhan, Shepard, Eric M., Yang, Hao, Warui, Douglas M., Impano, Stella, Booker, Squire J., Hoffman, Brian M., Broderick, William E., and Broderick, Joan B. Mon .
"[FeFe]‐Hydrogenase: Defined Lysate‐Free Maturation Reveals a Key Role for Lipoyl‐H‐Protein in DTMA Ligand Biosynthesis". Germany. https://doi.org/10.1002/ange.202203413.
@article{osti_1862893,
title = {[FeFe]‐Hydrogenase: Defined Lysate‐Free Maturation Reveals a Key Role for Lipoyl‐H‐Protein in DTMA Ligand Biosynthesis},
author = {Pagnier, Adrien and Balci, Batuhan and Shepard, Eric M. and Yang, Hao and Warui, Douglas M. and Impano, Stella and Booker, Squire J. and Hoffman, Brian M. and Broderick, William E. and Broderick, Joan B.},
abstractNote = {Abstract Maturation of [FeFe]‐hydrogenase (HydA) involves synthesis of a CO, CN − , and dithiomethylamine (DTMA)‐coordinated 2Fe subcluster that is inserted into HydA to make the active hydrogenase. This process requires three maturation enzymes: the radical S‐adenosyl‐ l ‐methionine (SAM) enzymes HydE and HydG, and the GTPase HydF. In vitro maturation with purified maturation enzymes has been possible only when clarified cell lysate was added, with the lysate presumably providing essential components for DTMA synthesis and delivery. Here we report maturation of [FeFe]‐hydrogenase using a fully defined system that includes components of the glycine cleavage system (GCS), but no cell lysate. Our results reveal for the first time an essential role for the aminomethyl‐lipoyl‐H‐protein of the GCS in hydrogenase maturation and the synthesis of the DTMA ligand of the H‐cluster. In addition, we show that ammonia is the source of the bridgehead nitrogen of DTMA.},
doi = {10.1002/ange.202203413},
journal = {Angewandte Chemie},
number = 22,
volume = 134,
place = {Germany},
year = {Mon Apr 11 00:00:00 EDT 2022},
month = {Mon Apr 11 00:00:00 EDT 2022}
}
https://doi.org/10.1002/ange.202203413
Works referenced in this record:
[FeFe]-Hydrogenase Cyanide Ligands Derived From S-Adenosylmethionine-Dependent Cleavage of Tyrosine
journal, January 2010
- Driesener, Rebecca C.; Challand, Martin R.; McGlynn, Shawn E.
- Angewandte Chemie International Edition, Vol. 49, Issue 9
Structural and functional characterization of the hydrogenase-maturation HydF protein
journal, May 2017
- Caserta, Giorgio; Pecqueur, Ludovic; Adamska-Venkatesh, Agnieszka
- Nature Chemical Biology, Vol. 13, Issue 7
[FeFe]-hydrogenase maturation: H-cluster assembly intermediates tracked by electron paramagnetic resonance, infrared, and X-ray absorption spectroscopy
journal, July 2020
- Németh, Brigitta; Senger, Moritz; Redman, Holly J.
- JBIC Journal of Biological Inorganic Chemistry, Vol. 25, Issue 5
Iron Carbonyl Sulfides, Formaldehyde, and Amines Condense To Give the Proposed Azadithiolate Cofactor of the Fe-Only Hydrogenases
journal, February 2002
- Li, Hongxiang; Rauchfuss, Thomas B.
- Journal of the American Chemical Society, Vol. 124, Issue 5
Crystal Structure of the [FeFe]-Hydrogenase Maturase HydE Bound to Complex-B
journal, May 2021
- Rohac, Roman; Martin, Lydie; Liu, Liang
- Journal of the American Chemical Society, Vol. 143, Issue 22
Biomimetic assembly and activation of [FeFe]-hydrogenases
journal, June 2013
- Berggren, G.; Adamska, A.; Lambertz, C.
- Nature, Vol. 499, Issue 7456
Combined Structural and Biochemical Analysis of the H−T Complex in the Glycine Decarboxylase Cycle: Evidence for a Destabilization Mechanism of the H-Protein
journal, March 2000
- Guilhaudis, Laure; Simorre, Jean-Pierre; Blackledge, Martin
- Biochemistry, Vol. 39, Issue 15
In vitro activation of [FeFe] hydrogenase: new insights into hydrogenase maturation
journal, March 2007
- McGlynn, Shawn E.; Ruebush, Shane S.; Naumov, Anatoli
- JBIC Journal of Biological Inorganic Chemistry, Vol. 12, Issue 4
Identification of genes required for hydrogenase activity in Chlamydomonas reinhardtii
journal, February 2005
- Posewitz, M. C.; King, P. W.; Smolinski, S. L.
- Biochemical Society Transactions, Vol. 33, Issue 1
Serine is the molecular source of the NH(CH 2 ) 2 bridgehead moiety of the in vitro assembled [FeFe] hydrogenase H-cluster
journal, January 2020
- Rao, Guodong; Tao, Lizhi; Britt, R. David
- Chemical Science, Vol. 11, Issue 5
High-Yield Expression of Heterologous [FeFe] Hydrogenases in Escherichia coli
journal, November 2010
- Kuchenreuther, Jon M.; Grady-Smith, Celestine S.; Bingham, Alyssa S.
- PLoS ONE, Vol. 5, Issue 11
Kristallstruktur und Spektroskopie offenbaren einen Schwefel‐Liganden am aktiven Zentrum einer O2‐stabilen [FeFe]‐Hydrogenase
journal, July 2020
- Rodríguez‐Maciá, Patricia; Galle, Lisa M.; Bjornsson, Ragnar
- Angewandte Chemie, Vol. 132, Issue 38
The maturase HydF enables [FeFe] hydrogenase assembly via transient, cofactor-dependent interactions
journal, August 2020
- Németh, Brigitta; Land, Henrik; Magnuson, Ann
- Journal of Biological Chemistry, Vol. 295, Issue 33
The [Fe-Fe]-Hydrogenase Maturation Protein HydF from Thermotoga maritima Is a GTPase with an Iron-Sulfur Cluster
journal, November 2005
- Brazzolotto, Xavier; Rubach, Jon K.; Gaillard, Jacques
- Journal of Biological Chemistry, Vol. 281, Issue 2
Discovery of Two Novel Radical S -Adenosylmethionine Proteins Required for the Assembly of an Active [Fe] Hydrogenase
journal, April 2004
- Posewitz, Matthew C.; King, Paul W.; Smolinski, Sharon L.
- Journal of Biological Chemistry, Vol. 279, Issue 24
[FeFe]-Hydrogenase Maturation
journal, June 2014
- Shepard, Eric M.; Mus, Florence; Betz, Jeremiah N.
- Biochemistry, Vol. 53, Issue 25
Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides
journal, June 2016
- Schilter, David; Camara, James M.; Huynh, Mioy T.
- Chemical Reviews, Vol. 116, Issue 15
New Insights into [FeFe] Hydrogenase Activation and Maturase Function
journal, September 2012
- Kuchenreuther, Jon M.; Britt, R. David; Swartz, James R.
- PLoS ONE, Vol. 7, Issue 9
From Enzyme Maturation to Synthetic Chemistry: The Case of Hydrogenases
journal, July 2015
- Artero, Vincent; Berggren, Gustav; Atta, Mohamed
- Accounts of Chemical Research, Vol. 48, Issue 8
The glycine decarboxylase system: a fascinating complex
journal, April 2001
- Douce, Roland; Bourguignon, Jacques; Neuburger, Michel
- Trends in Plant Science, Vol. 6, Issue 4
[FeFe]-Hydrogenase Maturation: Insights into the Role HydE Plays in Dithiomethylamine Biosynthesis
journal, March 2015
- Betz, Jeremiah N.; Boswell, Nicholas W.; Fugate, Corey J.
- Biochemistry, Vol. 54, Issue 9
Complex Multimeric [FeFe] Hydrogenases: Biochemistry, Physiology and New Opportunities for the Hydrogen Economy
journal, December 2018
- Schuchmann, Kai; Chowdhury, Nilanjan Pal; Müller, Volker
- Frontiers in Microbiology, Vol. 9
HydG, the “dangler” iron, and catalytic production of free CO and CN − : implications for [FeFe]-hydrogenase maturation
journal, January 2021
- Shepard, Eric M.; Impano, Stella; Duffus, Benjamin R.
- Dalton Transactions, Vol. 50, Issue 30
The binuclear cluster of [FeFe] hydrogenase is formed with sulfur donated by cysteine of an [Fe(Cys)(CO) 2 (CN)] organometallic precursor
journal, September 2019
- Rao, Guodong; Pattenaude, Scott A.; Alwan, Katherine
- Proceedings of the National Academy of Sciences, Vol. 116, Issue 42
Isolation and first EPR characterization of the [FeFe]-hydrogenases from green algae
journal, May 2008
- Kamp, Christina; Silakov, Alexey; Winkler, Martin
- Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1777, Issue 5
Synthesis of the 2Fe subcluster of the [FeFe]-hydrogenase H cluster on the HydF scaffold
journal, May 2010
- Shepard, E. M.; McGlynn, S. E.; Bueling, A. L.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 23
[FeFe]-Hydrogenase Cyanide Ligands Derived From S-Adenosylmethionine-Dependent Cleavage of Tyrosine
journal, January 2010
- Driesener, Rebecca C.; Challand, Martin R.; McGlynn, Shawn E.
- Angewandte Chemie, Vol. 122, Issue 9
Cell-free H-cluster Synthesis and [FeFe] Hydrogenase Activation: All Five CO and CN− Ligands Derive from Tyrosine
journal, May 2011
- Kuchenreuther, Jon M.; George, Simon J.; Grady-Smith, Celestine S.
- PLoS ONE, Vol. 6, Issue 5
Semisynthetic Hydrogenases Propel Biological Energy Research into a New Era
journal, September 2017
- Birrell, James A.; Rüdiger, Olaf; Reijerse, Edward J.
- Joule, Vol. 1, Issue 1
Purification and characterization of Desulfovibrio vulgaris (Hildenborough) hydrogenase expressed in Escherichia coli
journal, January 1987
- Voordouw, Gerrit; Hagen, Wilfred R.; Kruse-Wolters, K. Margreet
- European Journal of Biochemistry, Vol. 162, Issue 1
Caught in the H inact : Crystal Structure and Spectroscopy Reveal a Sulfur Bound to the Active Site of an O 2 ‐stable State of [FeFe] Hydrogenase
journal, July 2020
- Rodríguez‐Maciá, Patricia; Galle, Lisa M.; Bjornsson, Ragnar
- Angewandte Chemie International Edition, Vol. 59, Issue 38
[FeFe]-Hydrogenase Maturation: HydG-Catalyzed Synthesis of Carbon Monoxide
journal, July 2010
- Shepard, Eric M.; Duffus, Benjamin R.; George, Simon J.
- Journal of the American Chemical Society, Vol. 132, Issue 27
In Vivo EPR Characterization of Semi-Synthetic [FeFe] Hydrogenases
journal, February 2018
- Mészáros, Lívia S.; Németh, Brigitta; Esmieu, Charlène
- Angewandte Chemie, Vol. 130, Issue 10
From protein engineering to artificial enzymes – biological and biomimetic approaches towards sustainable hydrogen production
journal, January 2018
- Esmieu, C.; Raleiras, P.; Berggren, G.
- Sustainable Energy & Fuels, Vol. 2, Issue 4
Compositional and structural insights into the nature of the H-cluster precursor on HydF
journal, January 2018
- Scott, Anna G.; Szilagyi, Robert K.; Mulder, David W.
- Dalton Transactions, Vol. 47, Issue 28
Cysteine as a ligand platform in the biosynthesis of the FeFe hydrogenase H cluster
journal, August 2015
- Suess, Daniel L. M.; Bürstel, Ingmar; De La Paz, Liliana
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 37
Crystal Structure of Aminomethyltransferase in Complex with Dihydrolipoyl-H-Protein of the Glycine Cleavage System: IMPLICATIONS FOR RECOGNITION OF LIPOYL PROTEIN SUBSTRATE, DISEASE-RELATED MUTATIONS, AND REACTION MECHANISM
journal, April 2010
- Okamura-Ikeda, Kazuko; Hosaka, Harumi; Maita, Nobuo
- Journal of Biological Chemistry, Vol. 285, Issue 24
The HydG Enzyme Generates an Fe(CO)2(CN) Synthon in Assembly of the FeFe Hydrogenase H-Cluster
journal, January 2014
- Kuchenreuther, J. M.; Myers, W. K.; Suess, D. L. M.
- Science, Vol. 343, Issue 6169
HydF as a scaffold protein in [FeFe] hydrogenase H-cluster biosynthesis
journal, May 2008
- McGlynn, Shawn E.; Shepard, Eric M.; Winslow, Mark A.
- FEBS Letters, Vol. 582, Issue 15
Reprogramming bacterial protein organelles as a nanoreactor for hydrogen production
journal, October 2020
- Li, Tianpei; Jiang, Qiuyao; Huang, Jiafeng
- Nature Communications, Vol. 11, Issue 1
Characterization of the gene encoding the [Fe]-hydrogenase from Megasphaera elsdenii
journal, February 2000
- Atta, Mohamed; Meyer, Jacques
- Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, Vol. 1476, Issue 2
In Vivo EPR Characterization of Semi-Synthetic [FeFe] Hydrogenases
journal, February 2018
- Mészáros, Lívia S.; Németh, Brigitta; Esmieu, Charlène
- Angewandte Chemie International Edition, Vol. 57, Issue 10
Discovery of novel [FeFe]-hydrogenases for biocatalytic H 2 -production
journal, January 2019
- Land, Henrik; Ceccaldi, Pierre; Mészáros, Lívia S.
- Chemical Science, Vol. 10, Issue 43
Generation of a functional, semisynthetic [FeFe]-hydrogenase in a photosynthetic microorganism
journal, January 2018
- Wegelius, Adam; Khanna, Namita; Esmieu, Charlène
- Energy & Environmental Science, Vol. 11, Issue 11
Homologous and Heterologous Overexpression in Clostridium acetobutylicum and Characterization of Purified Clostridial and Algal Fe-Only Hydrogenases with High Specific Activities
journal, May 2005
- Girbal, L.; von Abendroth, G.; Winkler, M.
- Applied and Environmental Microbiology, Vol. 71, Issue 5
The [FeFe]-hydrogenase maturation protein HydF contains a H-cluster like [4Fe4S]-2Fe site
journal, December 2010
- Czech, Ilka; Stripp, Sven; Sanganas, Oliver
- FEBS Letters, Vol. 585, Issue 1
Monitoring H-cluster assembly using a semi-synthetic HydF protein
journal, January 2019
- Németh, Brigitta; Esmieu, Charlène; Redman, Holly J.
- Dalton Transactions, Vol. 48, Issue 18
Radical SAM Enzyme HydE Generates Adenosylated Fe(I) Intermediates En Route to the [FeFe]-Hydrogenase Catalytic H-Cluster
journal, May 2020
- Tao, Lizhi; Pattenaude, Scott A.; Joshi, Sumedh
- Journal of the American Chemical Society, Vol. 142, Issue 24
Cell-free synthesis and maturation of [FeFe] hydrogenases
journal, January 2008
- Boyer, Marcus E.; Stapleton, James A.; Kuchenreuther, Jon M.
- Biotechnology and Bioengineering, Vol. 99, Issue 1
Functional Studies of [FeFe] Hydrogenase Maturation in an Escherichia coli Biosynthetic System
journal, March 2006
- King, P. W.; Posewitz, M. C.; Ghirardi, M. L.
- Journal of Bacteriology, Vol. 188, Issue 6
Enzymes as modular catalysts for redox half-reactions in H2-powered chemical synthesis: from biology to technology
journal, January 2017
- Reeve, Holly A.; Ash, Philip A.; Park, HyunSeo
- Biochemical Journal, Vol. 474, Issue 2
Asymmetry in the Ligand Coordination Sphere of the [FeFe] Hydrogenase Active Site Is Reflected in the Magnetic Spin Interactions of the Aza-propanedithiolate Ligand
journal, October 2019
- Reijerse, Edward J.; Pelmenschikov, Vladimir; Birrell, James A.
- The Journal of Physical Chemistry Letters, Vol. 10, Issue 21
Hydrogenases
journal, March 2014
- Lubitz, Wolfgang; Ogata, Hideaki; Rüdiger, Olaf
- Chemical Reviews, Vol. 114, Issue 8
The [FeFe]-hydrogenase maturase HydF from Clostridium acetobutylicum contains a CO and CN − ligated iron cofactor
journal, December 2009
- Czech, Ilka; Silakov, Alexey; Lubitz, Wolfgang
- FEBS Letters, Vol. 584, Issue 3
Tyrosine, Cysteine, and S-Adenosyl Methionine Stimulate In Vitro [FeFe] Hydrogenase Activation
journal, October 2009
- Kuchenreuther, Jon M.; Stapleton, James A.; Swartz, James R.
- PLoS ONE, Vol. 4, Issue 10