DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets

Abstract

Lipids play a fundamental role in fungal cell biology, being essential cell membrane components and major targets of antifungal drugs. A deeper knowledge of lipid metabolism is key for developing new drugs and a better understanding of fungal pathogenesis. Here, we built a comprehensive map of the Histoplasma capsulatum lipid metabolic pathway by incorporating proteomic and lipidomic analyses. We performed genetic complementation and overexpression of H. capsulatum genes in Saccharomyces cerevisiae to validate reactions identified in the map and to determine enzymes responsible for catalyzing orphan reactions. The map led to the identification of both the fatty acid desaturation and the sphingolipid biosynthesis pathways as targets for drug development. We found that the sphingolipid biosynthesis inhibitor myriocin, the fatty acid desaturase inhibitor thiocarlide, and the fatty acid analog 10-thiastearic acid inhibit H. capsulatum growth in nanomolar to low-micromolar concentrations. These compounds also reduced the intracellular infection in an alveolar macrophage cell line. Overall, this lipid metabolic map revealed pathways that can be targeted for drug development.

Authors:
ORCiD logo [1];  [2];  [2];  [2];  [2];  [3]; ORCiD logo [2];  [2];  [2];  [2];  [2]; ORCiD logo [2]; ORCiD logo [2];  [2]; ORCiD logo [4]; ORCiD logo [2];  [5];  [6];  [3];  [1] more »; ORCiD logo [2]; « less
  1. Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, USA, Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine, Bronx, New York, USA
  2. Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA
  3. Environmental and Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington, USA
  4. Department of Biology, Brigham Young University, Provo, Utah, USA
  5. Hematology Laboratory, Department of Pathology, Albert Einstein College of Medicine, Bronx, New York, USA
  6. Department of Chemistry, North Carolina State University, Raleigh, North Carolina, USA
Publication Date:
Research Org.:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Org.:
USDOE; National Institutes of Health (NIH)
OSTI Identifier:
1832247
Alternate Identifier(s):
OSTI ID: 1836231
Report Number(s):
PNNL-SA-152496
Journal ID: ISSN 2150-7511; e02972-21
Grant/Contract Number:  
AC05-76RL01830; R21 AI124797; P42 ES027704
Resource Type:
Published Article
Journal Name:
mBio (Online)
Additional Journal Information:
Journal Name: mBio (Online) Journal Volume: 12 Journal Issue: 6; Journal ID: ISSN 2150-7511
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Histoplasma capsulatum; lipid metabolism; drug target; platelet-activating factor; multi-omics analysis

Citation Formats

Zamith-Miranda, Daniel, Heyman, Heino M., Burnet, Meagan C., Couvillion, Sneha P., Zheng, Xueyun, Munoz, Nathalie, Nelson, William C., Kyle, Jennifer E., Zink, Erika M., Weitz, Karl K., Bloodsworth, Kent J., Clair, Geremy, Zucker, Jeremy D., Teuton, Jeremy R., Payne, Samuel H., Kim, Young-Mo, Reyes Gil, Morayma, Baker, Erin S., Bredeweg, Erin L., Nosanchuk, Joshua D., Nakayasu, Ernesto S., and Kronstad, ed., James W. A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets. United States: N. p., 2021. Web. doi:10.1128/mBio.02972-21.
Zamith-Miranda, Daniel, Heyman, Heino M., Burnet, Meagan C., Couvillion, Sneha P., Zheng, Xueyun, Munoz, Nathalie, Nelson, William C., Kyle, Jennifer E., Zink, Erika M., Weitz, Karl K., Bloodsworth, Kent J., Clair, Geremy, Zucker, Jeremy D., Teuton, Jeremy R., Payne, Samuel H., Kim, Young-Mo, Reyes Gil, Morayma, Baker, Erin S., Bredeweg, Erin L., Nosanchuk, Joshua D., Nakayasu, Ernesto S., & Kronstad, ed., James W. A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets. United States. https://doi.org/10.1128/mBio.02972-21
Zamith-Miranda, Daniel, Heyman, Heino M., Burnet, Meagan C., Couvillion, Sneha P., Zheng, Xueyun, Munoz, Nathalie, Nelson, William C., Kyle, Jennifer E., Zink, Erika M., Weitz, Karl K., Bloodsworth, Kent J., Clair, Geremy, Zucker, Jeremy D., Teuton, Jeremy R., Payne, Samuel H., Kim, Young-Mo, Reyes Gil, Morayma, Baker, Erin S., Bredeweg, Erin L., Nosanchuk, Joshua D., Nakayasu, Ernesto S., and Kronstad, ed., James W. Tue . "A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets". United States. https://doi.org/10.1128/mBio.02972-21.
@article{osti_1832247,
title = {A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets},
author = {Zamith-Miranda, Daniel and Heyman, Heino M. and Burnet, Meagan C. and Couvillion, Sneha P. and Zheng, Xueyun and Munoz, Nathalie and Nelson, William C. and Kyle, Jennifer E. and Zink, Erika M. and Weitz, Karl K. and Bloodsworth, Kent J. and Clair, Geremy and Zucker, Jeremy D. and Teuton, Jeremy R. and Payne, Samuel H. and Kim, Young-Mo and Reyes Gil, Morayma and Baker, Erin S. and Bredeweg, Erin L. and Nosanchuk, Joshua D. and Nakayasu, Ernesto S. and Kronstad, ed., James W.},
abstractNote = {Lipids play a fundamental role in fungal cell biology, being essential cell membrane components and major targets of antifungal drugs. A deeper knowledge of lipid metabolism is key for developing new drugs and a better understanding of fungal pathogenesis. Here, we built a comprehensive map of the Histoplasma capsulatum lipid metabolic pathway by incorporating proteomic and lipidomic analyses. We performed genetic complementation and overexpression of H. capsulatum genes in Saccharomyces cerevisiae to validate reactions identified in the map and to determine enzymes responsible for catalyzing orphan reactions. The map led to the identification of both the fatty acid desaturation and the sphingolipid biosynthesis pathways as targets for drug development. We found that the sphingolipid biosynthesis inhibitor myriocin, the fatty acid desaturase inhibitor thiocarlide, and the fatty acid analog 10-thiastearic acid inhibit H. capsulatum growth in nanomolar to low-micromolar concentrations. These compounds also reduced the intracellular infection in an alveolar macrophage cell line. Overall, this lipid metabolic map revealed pathways that can be targeted for drug development.},
doi = {10.1128/mBio.02972-21},
journal = {mBio (Online)},
number = 6,
volume = 12,
place = {United States},
year = {Tue Dec 21 00:00:00 EST 2021},
month = {Tue Dec 21 00:00:00 EST 2021}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1128/mBio.02972-21

Save / Share:

Works referenced in this record:

LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data
journal, January 2017


Epidemiology of Histoplasmosis Outbreaks, United States, 1938–2013
journal, March 2016

  • Benedict, Kaitlin; Mody, Rajal K.
  • Emerging Infectious Diseases, Vol. 22, Issue 3
  • DOI: 10.3201/eid2203.151117

LPT1 Encodes a Membrane-bound O-Acyltransferase Involved in the Acylation of Lysophospholipids in the Yeast Saccharomyces cerevisiae
journal, November 2007

  • Tamaki, Hisanori; Shimada, Atsushi; Ito, Yoshihiro
  • Journal of Biological Chemistry, Vol. 282, Issue 47
  • DOI: 10.1074/jbc.M704509200

Antifungal therapeutics for dimorphic fungal pathogens
journal, September 2016


Lipid profiles of conidia of Aspergillus niger and a fatty acid auxotroph
journal, December 1987

  • Chattopadhyay, Panchanon; Banerjee, Santu Kumar; Sen, Kalyani
  • Canadian Journal of Microbiology, Vol. 33, Issue 12
  • DOI: 10.1139/m87-195

Functional Characterization of Flax Fatty Acid Desaturase FAD2 and FAD3 Isoforms Expressed in Yeast Reveals a Broad Diversity in Activity
journal, February 2014

  • Radovanovic, Natasa; Thambugala, Dinushika; Duguid, Scott
  • Molecular Biotechnology, Vol. 56, Issue 7
  • DOI: 10.1007/s12033-014-9737-1

Amphotericin forms an extramembranous and fungicidal sterol sponge
journal, March 2014

  • Anderson, Thomas M.; Clay, Mary C.; Cioffi, Alexander G.
  • Nature Chemical Biology, Vol. 10, Issue 5
  • DOI: 10.1038/nchembio.1496

Antimycobacterial Activities of Isoxyl and New Derivatives through the Inhibition of Mycolic Acid Synthesis
journal, May 1999

  • Phetsuksiri, Benjawan; Baulard, Alain R.; Cooper, Andrea M.
  • Antimicrobial Agents and Chemotherapy, Vol. 43, Issue 5
  • DOI: 10.1128/AAC.43.5.1042

Chemical evaluation of fatty acid desaturases as drug targets in Trypanosoma cruzi
journal, July 2009

  • Alloatti, Andrés; Testero, Sebastián A.; Uttaro, Antonio D.
  • International Journal for Parasitology, Vol. 39, Issue 9
  • DOI: 10.1016/j.ijpara.2009.01.011

Myriocin Significantly Increases the Mortality of a Non-Mammalian Model Host during Candida Pathogenesis
journal, November 2013


Lipid profiles of Aspergillus niger and its unsaturated fatty acid auxotroph, UFA 2
journal, April 1985

  • Chattopadhyay, Panchanon; Banerjee, Santu Kumar; Sen, Kalyani
  • Canadian Journal of Microbiology, Vol. 31, Issue 4
  • DOI: 10.1139/m85-067

Amphotericin primarily kills yeast by simply binding ergosterol
journal, January 2012

  • Gray, K. C.; Palacios, D. S.; Dailey, I.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 7
  • DOI: 10.1073/pnas.1117280109

Antifungal Resistance, Metabolic Routes as Drug Targets, and New Antifungal Agents: An Overview about Endemic Dimorphic Fungi
journal, January 2017

  • Parente-Rocha, Juliana Alves; Bailão, Alexandre Melo; Amaral, André Correa
  • Mediators of Inflammation, Vol. 2017
  • DOI: 10.1155/2017/9870679

Synthesis-enabled functional group deletions reveal key underpinnings of amphotericin B ion channel and antifungal activities
journal, February 2011

  • Palacios, D. S.; Dailey, I.; Siebert, D. M.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 17
  • DOI: 10.1073/pnas.1015023108

MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses
journal, May 2016


Vesicular transport in Histoplasma capsulatum : an effective mechanism for trans-cell wall transfer of proteins and lipids in ascomycetes
journal, August 2008


Antifungal Activity of Acylhydrazone Derivatives against Sporothrix spp.
journal, April 2021

  • Artunduaga Bonilla, Jhon Jhamilton; Honorato, Leandro; Haranahalli, Krupanandan
  • Antimicrobial Agents and Chemotherapy, Vol. 65, Issue 5
  • DOI: 10.1128/AAC.02593-20

The quantitative proteome of a human cell line
journal, January 2011

  • Beck, Martin; Schmidt, Alexander; Malmstroem, Johan
  • Molecular Systems Biology, Vol. 7, Issue 1
  • DOI: 10.1038/msb.2011.82

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
journal, July 2010

  • Pluskal, Tomáš; Castillo, Sandra; Villar-Briones, Alejandro
  • BMC Bioinformatics, Vol. 11, Issue 1
  • DOI: 10.1186/1471-2105-11-395

Lipidomic Analysis of Extracellular Vesicles from the Pathogenic Phase of Paracoccidioides brasiliensis
journal, June 2012


Fingolimod (FTY720): A Recently Approved Multiple Sclerosis Drug Based on a Fungal Secondary Metabolite
journal, April 2011

  • Strader, Cherilyn R.; Pearce, Cedric J.; Oberlies, Nicholas H.
  • Journal of Natural Products, Vol. 74, Issue 4
  • DOI: 10.1021/np2000528

Antibody Binding Alters the Characteristics and Contents of Extracellular Vesicles Released by Histoplasma capsulatum
journal, March 2016

  • Matos Baltazar, Ludmila; Nakayasu, Ernesto S.; Sobreira, Tiago J. P.
  • mSphere, Vol. 1, Issue 2
  • DOI: 10.1128/mSphere.00085-15

The readily extracted lipids of Histoplasma capsulatum and Blastomyces dermatitidis
journal, May 1971

  • Domer, Judith E.; Hamilton, James G.
  • Biochimica et Biophysica Acta (BBA) - Lipids and Lipid Metabolism, Vol. 231, Issue 3
  • DOI: 10.1016/0005-2760(71)90114-7

Identification of Antifungal Compounds against Multidrug-Resistant Candida auris Utilizing a High-Throughput Drug-Repurposing Screen
journal, March 2021

  • Cheng, Yu-Shan; Roma, Jose Santinni; Shen, Min
  • Antimicrobial Agents and Chemotherapy, Vol. 65, Issue 4
  • DOI: 10.1128/AAC.01305-20

Inhibition of ceramide de novo synthesis by myriocin produces the double effect of reducing pathological inflammation and exerting antifungal activity against A. fumigatus airways infection
journal, June 2016

  • Caretti, Anna; Torelli, Riccardo; Perdoni, Federica
  • Biochimica et Biophysica Acta (BBA) - General Subjects, Vol. 1860, Issue 6
  • DOI: 10.1016/j.bbagen.2016.02.014

Glucosylceramide synthase is an essential regulator of pathogenicity of Cryptococcus neoformans
journal, June 2006

  • Rittershaus, P. C.
  • Journal of Clinical Investigation, Vol. 116, Issue 6
  • DOI: 10.1172/JCI27890

The Role of Ceramide Synthases in the Pathogenicity of Cryptococcus neoformans
journal, February 2018


Multistate Epidemiology of Histoplasmosis, United States, 2011–2014 1
journal, March 2017

  • Armstrong, Paige A.; Jackson, Brendan R.; Haselow, Dirk
  • Emerging Infectious Diseases, Vol. 24, Issue 3
  • DOI: 10.3201/eid2403.171258

Deciphering the Pathways of Death of Histoplasma capsulatum -Infected Macrophages: Implications for the Immunopathogenesis of Early Infection
journal, November 2011


Unique Mechanism of Action of the Thiourea Drug Isoxyl on Mycobacterium tuberculosis
journal, December 2003

  • Phetsuksiri, Benjawan; Jackson, Mary; Scherman, Hataichanok
  • Journal of Biological Chemistry, Vol. 278, Issue 52
  • DOI: 10.1074/jbc.M311209200

Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure
journal, April 1995

  • Gietz, R. Daniel; Schiestl, Robert H.; Willems, Andrew R.
  • Yeast, Vol. 11, Issue 4, p. 355-360
  • DOI: 10.1002/yea.320110408

Identification of a New Class of Antifungals Targeting the Synthesis of Fungal Sphingolipids
journal, July 2015


Phylogenetic Distribution of Fungal Sterols
journal, May 2010


Antifungal activity of Myriocin on clinically relevant Aspergillus fumigatus strains producing biofilm
journal, October 2015


Principles of cellular resource allocation revealed by condition-dependent proteome profiling
journal, August 2017


Sterols and Fatty Acids of the Mortierellaceae: Taxonomic Implications
journal, July 1999

  • Weete, J. D.; Gandhi, S. R.
  • Mycologia, Vol. 91, Issue 4
  • DOI: 10.2307/3761250

Pharmacology and Safety of Tetradecylthioacetic Acid (TTA): Phase-1 Study
journal, January 2008

  • Pettersen, Reidar J.; Salem, Mohamed; Skorve, Jon
  • Journal of Cardiovascular Pharmacology, Vol. 51, Issue 4
  • DOI: 10.1097/FJC.0b013e3181673be0

Screening of Chemical Libraries for New Antifungal Drugs against Aspergillus fumigatus Reveals Sphingolipids Are Involved in the Mechanism of Action of Miltefosine
journal, August 2021

  • dos Reis, Thaila Fernanda; Horta, Maria Augusta Crivelente; Colabardini, Ana Cristina
  • mBio, Vol. 12, Issue 4
  • DOI: 10.1128/mBio.01458-21

Hospitalizations for Endemic Mycoses: A Population-Based National Study
journal, March 2006

  • Chu, J. H.; Feudtner, C.; Heydon, K.
  • Clinical Infectious Diseases, Vol. 42, Issue 6
  • DOI: 10.1086/500405

Isoxyl particles for pulmonary delivery: In vitro cytotoxicity and potency
journal, August 2010


Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes
journal, January 2013

  • Kim, Young-Mo; Schmidt, Brian J.; Kidwai, Afshan S.
  • Molecular BioSystems, Vol. 9, Issue 6
  • DOI: 10.1039/c3mb25598k

Multi-omics Signature of Candida auris , an Emerging and Multidrug-Resistant Pathogen
journal, June 2019


FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry
journal, December 2009

  • Kind, Tobias; Wohlgemuth, Gert; Lee, Do Yup
  • Analytical Chemistry, Vol. 81, Issue 24
  • DOI: 10.1021/ac9019522

New Horizons in Antifungal Therapy
journal, October 2016


Myriocin, a new Antifungal Antibiotic from Myriococcum Albomyces
journal, January 1972


Cross‐species discovery of syncretic drug combinations that potentiate the antifungal fluconazole
journal, January 2011

  • Spitzer, Michaela; Griffiths, Emma; Blakely, Kim M.
  • Molecular Systems Biology, Vol. 7, Issue 1
  • DOI: 10.1038/msb.2011.31

Quantitative Analysis of Proteome and Lipidome Dynamics Reveals Functional Regulation of Global Lipid Metabolism
journal, March 2015


Mass-spectrometry-based draft of the human proteome
journal, May 2014

  • Wilhelm, Mathias; Schlegl, Judith; Hahne, Hannes
  • Nature, Vol. 509, Issue 7502
  • DOI: 10.1038/nature13319

Acylhydrazones as Antifungal Agents Targeting the Synthesis of Fungal Sphingolipids
journal, May 2018

  • Lazzarini, Cristina; Haranahalli, Krupanandan; Rieger, Robert
  • Antimicrobial Agents and Chemotherapy, Vol. 62, Issue 5
  • DOI: 10.1128/AAC.00156-18

Global and Multi-National Prevalence of Fungal Diseases—Estimate Precision
journal, October 2017

  • Bongomin, Felix; Gago, Sara; Oladele, Rita
  • Journal of Fungi, Vol. 3, Issue 4
  • DOI: 10.3390/jof3040057

Histoplasma capsulatum: More Widespread than Previously Thought
journal, June 2014

  • Antinori, Spinello
  • The American Journal of Tropical Medicine and Hygiene, Vol. 90, Issue 6
  • DOI: 10.4269/ajtmh.14-0175

Sterol distribution in arbuscular mycorrhizal fungi
journal, March 1999


Remodeling of the Histoplasma Capsulatum Membrane Induced by Monoclonal Antibodies
journal, June 2020

  • Burnet, Meagan C.; Zamith-Miranda, Daniel; Heyman, Heino M.
  • Vaccines, Vol. 8, Issue 2
  • DOI: 10.3390/vaccines8020269

Concentration-dependent protein loading of extracellular vesicles released by Histoplasma capsulatum after antibody treatment and its modulatory action upon macrophages
journal, May 2018

  • Baltazar, Ludmila Matos; Zamith-Miranda, Daniel; Burnet, Meagan C.
  • Scientific Reports, Vol. 8, Issue 1
  • DOI: 10.1038/s41598-018-25665-5

Trypanosoma Cruzi Oleate Desaturase: Molecular Characterization and Comparative Analysis in Other Trypanosomatids
journal, October 2006

  • Maldonado, Rosa A.; Kuniyoshi, Renata K.; Linss, Jutta G.
  • Journal of Parasitology, Vol. 92, Issue 5
  • DOI: 10.1645/GE-845R.1

Candida albicans gains azole resistance by altering sphingolipid composition
journal, October 2018


MetaboliteDetector: Comprehensive Analysis Tool for Targeted and Nontargeted GC/MS Based Metabolome Analysis
journal, May 2009

  • Hiller, Karsten; Hangebrauk, Jasper; Jäger, Christian
  • Analytical Chemistry, Vol. 81, Issue 9
  • DOI: 10.1021/ac802689c

Lipidomics reveals dramatic lipid compositional changes in the maturing postnatal lung
journal, February 2017

  • Dautel, Sydney E.; Kyle, Jennifer E.; Clair, Geremy
  • Scientific Reports, Vol. 7, Issue 1
  • DOI: 10.1038/srep40555

Identification of bifunctional  12/ 3 fatty acid desaturases for improving the ratio of  3 to  6 fatty acids in microbes and plants
journal, June 2006

  • Damude, H. G.; Zhang, H.; Farrall, L.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 25
  • DOI: 10.1073/pnas.0511079103

Antifungal Agents: Mode of Action, Mechanisms of Resistance, and Correlation of These Mechanisms with Bacterial Resistance
journal, October 1999

  • Ghannoum, Mahmoud A.; Rice, Louis B.
  • Clinical Microbiology Reviews, Vol. 12, Issue 4
  • DOI: 10.1128/CMR.12.4.501

Media matters! Alterations in the loading and release of Histoplasma capsulatum extracellular vesicles in response to different nutritional milieus
journal, June 2020

  • Cleare, Levi G.; Zamith, Daniel; Heyman, Heino M.
  • Cellular Microbiology, Vol. 22, Issue 9
  • DOI: 10.1111/cmi.13217

Antifungal effect of voriconazole on intracellular Candida glabrata, Candida krusei and Candida parapsilosis in human monocyte-derived macrophages
journal, July 2006

  • Bopp, Lawrence H.; Baltch, Aldona L.; Ritz, William J.
  • Journal of Medical Microbiology, Vol. 55, Issue 7
  • DOI: 10.1099/jmm.0.46393-0