Comparing GGA, GGA+ U , and meta-GGA functionals for redox-dependent binding at open metal sites in metal–organic frameworks
Abstract
Metal–organic frameworks (MOFs) with open metal sites have been widely investigated for the selective adsorption of small molecules via redox mechanisms where charge transfer can take place between the binding site and the adsorbate of interest. Quantum-chemical screening methods based on density functional theory have emerged as a promising route to accelerate the discovery of MOFs with enhanced binding affinities toward various adsorbates. However, the success of this approach is linked to the accuracy of the underlying density functional approximations (DFAs). In this work, we compare commonly used generalized gradient approximation (GGA), GGA+U, and meta-GGA exchange-correlation functionals in modeling redox-dependent binding at open metal sites in MOFs using O2 and N2 as representative small molecules. We find that the self-interaction error inherent to the widely used Perdew, Burke, and Ernzerhof (PBE) GGA predicts metal sites that are artificially redox-active, as evidenced by their strong binding affinities, short metal–adsorbate bond distances, and large degree of charge transfer. The incorporation of metal-specific, empirical Hubbard U corrections based on the transition metal oxide literature systematically reduces the redox activity of the open metal sites, often improving agreement with experiment. Additionally, the binding behavior shifts from strong chemisorption to weaker physisorption as a functionmore »
- Authors:
-
- Northwestern Univ., Evanston, IL (United States)
- Publication Date:
- Research Org.:
- Northwestern Univ., Evanston, IL (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1800088
- Alternate Identifier(s):
- OSTI ID: 1632231
- Grant/Contract Number:
- FG02-03ER15457
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Chemical Physics
- Additional Journal Information:
- Journal Volume: 152; Journal Issue: 22; Journal ID: ISSN 0021-9606
- Publisher:
- American Institute of Physics (AIP)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; Chemistry; Physics; Chemisorption; Redox reactions; Generalized gradient approximations; Electrostatics; Crystalline solids; Exchange correlation functionals; Charge transfer; Delocalization; Density functional theory; Adsorption
Citation Formats
Rosen, Andrew S., Notestein, Justin M., and Snurr, Randall Q. Comparing GGA, GGA+ U , and meta-GGA functionals for redox-dependent binding at open metal sites in metal–organic frameworks. United States: N. p., 2020.
Web. doi:10.1063/5.0010166.
Rosen, Andrew S., Notestein, Justin M., & Snurr, Randall Q. Comparing GGA, GGA+ U , and meta-GGA functionals for redox-dependent binding at open metal sites in metal–organic frameworks. United States. https://doi.org/10.1063/5.0010166
Rosen, Andrew S., Notestein, Justin M., and Snurr, Randall Q. Sun .
"Comparing GGA, GGA+ U , and meta-GGA functionals for redox-dependent binding at open metal sites in metal–organic frameworks". United States. https://doi.org/10.1063/5.0010166. https://www.osti.gov/servlets/purl/1800088.
@article{osti_1800088,
title = {Comparing GGA, GGA+ U , and meta-GGA functionals for redox-dependent binding at open metal sites in metal–organic frameworks},
author = {Rosen, Andrew S. and Notestein, Justin M. and Snurr, Randall Q.},
abstractNote = {Metal–organic frameworks (MOFs) with open metal sites have been widely investigated for the selective adsorption of small molecules via redox mechanisms where charge transfer can take place between the binding site and the adsorbate of interest. Quantum-chemical screening methods based on density functional theory have emerged as a promising route to accelerate the discovery of MOFs with enhanced binding affinities toward various adsorbates. However, the success of this approach is linked to the accuracy of the underlying density functional approximations (DFAs). In this work, we compare commonly used generalized gradient approximation (GGA), GGA+U, and meta-GGA exchange-correlation functionals in modeling redox-dependent binding at open metal sites in MOFs using O2 and N2 as representative small molecules. We find that the self-interaction error inherent to the widely used Perdew, Burke, and Ernzerhof (PBE) GGA predicts metal sites that are artificially redox-active, as evidenced by their strong binding affinities, short metal–adsorbate bond distances, and large degree of charge transfer. The incorporation of metal-specific, empirical Hubbard U corrections based on the transition metal oxide literature systematically reduces the redox activity of the open metal sites, often improving agreement with experiment. Additionally, the binding behavior shifts from strong chemisorption to weaker physisorption as a function of U. The M06-L meta-GGA typically predicts binding energies between those of PBE-D3(BJ) and PBE-D3(BJ)+U when using empirically derived U values from the transition metal oxide literature. Despite the strong sensitivity of the binding affinities toward a given DFA, the GGA, GGA+U, and meta-GGA approaches often yield the same qualitative trends and structure–property relationships.},
doi = {10.1063/5.0010166},
journal = {Journal of Chemical Physics},
number = 22,
volume = 152,
place = {United States},
year = {Sun Jun 14 00:00:00 EDT 2020},
month = {Sun Jun 14 00:00:00 EDT 2020}
}
Web of Science
Works referenced in this record:
Validation of Exchange−Correlation Functionals for Spin States of Iron Complexes
journal, June 2004
- Swart, Marcel; Groenhof, André R.; Ehlers, Andreas W.
- The Journal of Physical Chemistry A, Vol. 108, Issue 25
Where Does the Density Localize in the Solid State? Divergent Behavior for Hybrids and DFT+U
journal, January 2018
- Zhao, Qing; Kulik, Heather J.
- Journal of Chemical Theory and Computation, Vol. 14, Issue 2
Drastic Enhancement of Catalytic Activity via Post-oxidation of a Porous Mn II Triazolate Framework
journal, July 2014
- Liao, Pei-Qin; Li, Xu-Yu; Bai, Jie
- Chemistry - A European Journal, Vol. 20, Issue 36
Tuning the Redox Activity of Metal–Organic Frameworks for Enhanced, Selective O 2 Binding: Design Rules and Ambient Temperature O 2 Chemisorption in a Cobalt–Triazolate Framework
journal, February 2020
- Rosen, Andrew S.; Mian, M. Rasel; Islamoglu, Timur
- Journal of the American Chemical Society, Vol. 142, Issue 9
Selective nitrogen capture by porous hybrid materials containing accessible transition metal ion sites
journal, December 2016
- Yoon, Ji Woong; Chang, Hyunju; Lee, Seung-Joon
- Nature Materials, Vol. 16, Issue 5
Benchmarking of GGA density functionals for modeling structures of nanoporous, rigid and flexible MOFs
journal, August 2018
- Formalik, Filip; Fischer, Michael; Rogacka, Justyna
- The Journal of Chemical Physics, Vol. 149, Issue 6
Structure, characterization, and catalytic properties of open-metal sites in metal organic frameworks
journal, January 2019
- Hall, Jacklyn N.; Bollini, Praveen
- Reaction Chemistry & Engineering, Vol. 4, Issue 2
An ultra-tunable platform for molecular engineering of high-performance crystalline porous materials
journal, December 2016
- Zhai, Quan-Guo; Bu, Xianhui; Mao, Chengyu
- Nature Communications, Vol. 7, Issue 1
A grid-based Bader analysis algorithm without lattice bias
journal, January 2009
- Tang, W.; Sanville, E.; Henkelman, G.
- Journal of Physics: Condensed Matter, Vol. 21, Issue 8
Development of a Cambridge Structural Database Subset: A Collection of Metal–Organic Frameworks for Past, Present, and Future
journal, March 2017
- Moghadam, Peyman Z.; Li, Aurelia; Wiggin, Seth B.
- Chemistry of Materials, Vol. 29, Issue 7
Hydrogen adsorption in a nickel based coordination polymer with open metal sites in the cylindrical cavities of the desolvated framework
journal, January 2006
- Dietzel, Pascal D. C.; Panella, Barbara; Hirscher, Michael
- Chemical Communications, Issue 9
Small-Molecule Adsorption in Open-Site Metal–Organic Frameworks: A Systematic Density Functional Theory Study for Rational Design
journal, January 2015
- Lee, Kyuho; Howe, Joshua D.; Lin, Li-Chiang
- Chemistry of Materials, Vol. 27, Issue 3, p. 668-678
Spinning around in Transition-Metal Chemistry
journal, November 2016
- Swart, Marcel; Gruden, Maja
- Accounts of Chemical Research, Vol. 49, Issue 12
Perspective: Treating electron over-delocalization with the DFT+U method
journal, June 2015
- Kulik, Heather J.
- The Journal of Chemical Physics, Vol. 142, Issue 24
Structure–Activity Relationships That Identify Metal–Organic Framework Catalysts for Methane Activation
journal, March 2019
- Rosen, Andrew S.; Notestein, Justin M.; Snurr, Randall Q.
- ACS Catalysis, Vol. 9, Issue 4
Selective Binding of O 2 over N 2 in a Redox–Active Metal–Organic Framework with Open Iron(II) Coordination Sites
journal, September 2011
- Bloch, Eric D.; Murray, Leslie J.; Queen, Wendy L.
- Journal of the American Chemical Society, Vol. 133, Issue 37
Metal–dioxygen and metal–dinitrogen complexes: where are the electrons?
journal, January 2010
- Holland, Patrick L.
- Dalton Transactions, Vol. 39, Issue 23
Assessments of Semilocal Density Functionals and Corrections for Carbon Dioxide Adsorption on Metal-Organic Frameworks
journal, August 2014
- Ji, Hyunjun; Park, Joonho; Cho, Moses
- ChemPhysChem, Vol. 15, Issue 15
The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals
journal, July 2007
- Zhao, Yan; Truhlar, Donald G.
- Theoretical Chemistry Accounts, Vol. 120, Issue 1-3
First-Principles Study of Microporous Magnets M-MOF-74 (M = Ni, Co, Fe, Mn): the Role of Metal Centers
journal, August 2013
- Zhang, Qiuju; Li, Baihai; Chen, Liang
- Inorganic Chemistry, Vol. 52, Issue 16
Computational screening study towards redox-active metal-organic frameworks
journal, November 2013
- Jelic, Jelena; Denysenko, Dmytro; Volkmer, Dirk
- New Journal of Physics, Vol. 15, Issue 11
Mn 2 (2,5-disulfhydrylbenzene-1,4-dicarboxylate): A Microporous Metal–Organic Framework with Infinite (−Mn–S−) ∞ Chains and High Intrinsic Charge Mobility
journal, May 2013
- Sun, Lei; Miyakai, Tomoyo; Seki, Shu
- Journal of the American Chemical Society, Vol. 135, Issue 22
Does DFT+U mimic hybrid density functionals?
journal, July 2016
- Verma, Pragya; Truhlar, Donald G.
- Theoretical Chemistry Accounts, Vol. 135, Issue 8
Reversible Capture and Release of Cl 2 and Br 2 with a Redox-Active Metal–Organic Framework
journal, April 2017
- Tulchinsky, Yuri; Hendon, Christopher H.; Lomachenko, Kirill A.
- Journal of the American Chemical Society, Vol. 139, Issue 16
Selective adsorption of ethylene over ethane and propylene over propane in the metal–organic frameworks M2(dobdc) (M = Mg, Mn, Fe, Co, Ni, Zn)
journal, January 2013
- Geier, Stephen J.; Mason, Jarad A.; Bloch, Eric D.
- Chemical Science, Vol. 4, Issue 5
Insights into Current Limitations of Density Functional Theory
journal, August 2008
- Cohen, A. J.; Mori-Sanchez, P.; Yang, W.
- Science, Vol. 321, Issue 5890
A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
journal, April 2010
- Grimme, Stefan; Antony, Jens; Ehrlich, Stephan
- The Journal of Chemical Physics, Vol. 132, Issue 15
Simulation of Heme Using DFT + U: A Step toward Accurate Spin-State Energetics
journal, June 2007
- Scherlis, Damián A.; Cococcioni, Matteo; Sit, Patrick
- The Journal of Physical Chemistry B, Vol. 111, Issue 25, p. 7384-7391
Where Does the Density Localize? Convergent Behavior for Global Hybrids, Range Separation, and DFT+U
journal, November 2016
- Gani, Terry Z. H.; Kulik, Heather J.
- Journal of Chemical Theory and Computation, Vol. 12, Issue 12
Effect of the damping function in dispersion corrected density functional theory
journal, March 2011
- Grimme, Stefan; Ehrlich, Stephan; Goerigk, Lars
- Journal of Computational Chemistry, Vol. 32, Issue 7
Thirty years of density functional theory in computational chemistry: an overview and extensive assessment of 200 density functionals
journal, April 2017
- Mardirossian, Narbe; Head-Gordon, Martin
- Molecular Physics, Vol. 115, Issue 19
Introducing DDEC6 atomic population analysis: part 2. Computed results for a wide range of periodic and nonperiodic materials
journal, January 2016
- Limas, Nidia Gabaldon; Manz, Thomas A.
- RSC Advances, Vol. 6, Issue 51
Air Separation by Catechol-Ligated Transition Metals: A Quantum Chemical Screening
journal, May 2018
- Stoneburner, Samuel J.; Gagliardi, Laura
- The Journal of Physical Chemistry C, Vol. 122, Issue 39
Bioinorganic Chemistry Modeled with the TPSSh Density Functional
journal, November 2008
- Jensen, Kasper P.
- Inorganic Chemistry, Vol. 47, Issue 22
First-principles Hubbard U approach for small molecule binding in metal-organic frameworks
journal, May 2016
- Mann, Gregory W.; Lee, Kyuho; Cococcioni, Matteo
- The Journal of Chemical Physics, Vol. 144, Issue 17
The atomic simulation environment—a Python library for working with atoms
journal, June 2017
- Hjorth Larsen, Ask; Jørgen Mortensen, Jens; Blomqvist, Jakob
- Journal of Physics: Condensed Matter, Vol. 29, Issue 27
CO Adsorption and Oxidation on Ceria Surfaces from DFT+U Calculations
journal, May 2008
- Huang, Min; Fabris, Stefano
- The Journal of Physical Chemistry C, Vol. 112, Issue 23
A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions
journal, November 2006
- Zhao, Yan; Truhlar, Donald G.
- The Journal of Chemical Physics, Vol. 125, Issue 19, Article No. 194101
Many-electron self-interaction error in approximate density functionals
journal, November 2006
- Mori-Sánchez, Paula; Cohen, Aron J.; Yang, Weitao
- The Journal of Chemical Physics, Vol. 125, Issue 20
Million-Fold Electrical Conductivity Enhancement in Fe 2 (DEBDC) versus Mn 2 (DEBDC) (E = S, O)
journal, May 2015
- Sun, Lei; Hendon, Christopher H.; Minier, Mikael A.
- Journal of the American Chemical Society, Vol. 137, Issue 19
Hydroxide Ligands Cooperate with Catalytic Centers in Metal–Organic Frameworks for Efficient Photocatalytic CO 2 Reduction
journal, December 2017
- Wang, Yu; Huang, Ning-Yu; Shen, Jian-Qiang
- Journal of the American Chemical Society, Vol. 140, Issue 1
An Alkaline-Stable, Metal Hydroxide Mimicking Metal–Organic Framework for Efficient Electrocatalytic Oxygen Evolution
journal, June 2016
- Lu, Xue-Feng; Liao, Pei-Qin; Wang, Jia-Wei
- Journal of the American Chemical Society, Vol. 138, Issue 27
Hydrogen Storage and Selective, Reversible O 2 Adsorption in a Metal-Organic Framework with Open Chromium(II) Sites
journal, June 2016
- Bloch, Eric D.; Queen, Wendy L.; Hudson, Matthew R.
- Angewandte Chemie International Edition, Vol. 55, Issue 30
Direct minimization technique for metals in density functional theory
journal, June 2009
- Freysoldt, Christoph; Boeck, Sixten; Neugebauer, Jörg
- Physical Review B, Vol. 79, Issue 24
Large-scale screening of hypothetical metal–organic frameworks
journal, November 2011
- Wilmer, Christopher E.; Leaf, Michael; Lee, Chang Yeon
- Nature Chemistry, Vol. 4, Issue 2, p. 83-89
Identifying promising metal–organic frameworks for heterogeneous catalysis via high‐throughput periodic density functional theory
journal, February 2019
- Rosen, Andrew S.; Notestein, Justin M.; Snurr, Randall Q.
- Journal of Computational Chemistry, Vol. 40, Issue 12
Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities
journal, October 2018
- Vogiatzis, Konstantinos D.; Polynski, Mikhail V.; Kirkland, Justin K.
- Chemical Reviews, Vol. 119, Issue 4
The Chemistry and Applications of Metal-Organic Frameworks
journal, August 2013
- Furukawa, H.; Cordova, K. E.; O'Keeffe, M.
- Science, Vol. 341, Issue 6149, p. 1230444-1230444
Perspective on density functional theory
journal, April 2012
- Burke, Kieron
- The Journal of Chemical Physics, Vol. 136, Issue 15
Topologically Guided, Automated Construction of Metal–Organic Frameworks and Their Evaluation for Energy-Related Applications
journal, September 2017
- Colón, Yamil J.; Gómez-Gualdrón, Diego A.; Snurr, Randall Q.
- Crystal Growth & Design, Vol. 17, Issue 11
A spin transition mechanism for cooperative adsorption in metal–organic frameworks
journal, September 2017
- Reed, Douglas A.; Keitz, Benjamin K.; Oktawiec, Julia
- Nature, Vol. 550, Issue 7674
Python Materials Genomics (pymatgen): A robust, open-source python library for materials analysis
journal, February 2013
- Ong, Shyue Ping; Richards, William Davidson; Jain, Anubhav
- Computational Materials Science, Vol. 68
Selective, Tunable O 2 Binding in Cobalt(II)–Triazolate/Pyrazolate Metal–Organic Frameworks
journal, May 2016
- Xiao, Dianne J.; Gonzalez, Miguel I.; Darago, Lucy E.
- Journal of the American Chemical Society, Vol. 138, Issue 22