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Title: Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6

Journal Article · · Genome Announcements

ABSTRACT Here, we present the draft genome sequence of Burkholderia pseudomallei PHLS 6, a virulent clinical strain isolated from a melioidosis patient in Bangladesh in 1960. The draft genome consists of 39 contigs and is 7,322,181 bp long.

Sponsoring Organization:
USDOE
OSTI ID:
1786402
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Journal Issue: 3 Vol. 4; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (29)

Simple sequence repeat (SSR)-based gene diversity in Burkholderia pseudomallei and Burkholderia mallei journal February 2009
Halving of Mortality of Severe Melioidosis by Ceftazidime journal September 1989
Predicted global distribution of Burkholderia pseudomallei and burden of melioidosis journal January 2016
Melioidosis: insights into the pathogenicity of Burkholderia pseudomallei journal April 2006
Melioidosis journal September 2012
Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei journal September 2004
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing journal May 2012
An Ergatis-based prokaryotic genome annotation web server journal March 2010
NxTrim: optimized trimming of Illumina mate pair reads: Table 1. journal February 2015
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) journal November 2013
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Patterns of large-scale genomic variation in virulent and avirulent Burkholderia species journal November 2004
ALLPATHS: De novo assembly of whole-genome shotgun microreads journal February 2008
Base-Calling of Automated Sequencer Traces Using Phred.  I. Accuracy Assessment journal March 1998
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities journal March 1998
Integrative Genomic, Transcriptional, and Proteomic Diversity in Natural Isolates of the Human Pathogen Burkholderia pseudomallei journal June 2005
Microevolution of Burkholderia pseudomallei during an Acute Infection journal June 2014
GapFiller: a de novo assembly approach to fill the gap within paired reads journal September 2012
Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts journal September 2006
Burkholderia pseudomallei genome plasticity associated with genomic island variation journal January 2008
Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping journal January 2007
Bridger: a new framework for de novo transcriptome assembly using RNA-seq data journal February 2015
The Epidemiology and Clinical Spectrum of Melioidosis: 540 Cases from the 20 Year Darwin Prospective Study journal November 2010
The Core and Accessory Genomes of Burkholderia pseudomallei: Implications for Human Melioidosis journal October 2008
Within-Host Evolution of Burkholderia pseudomallei in Four Cases of Acute Melioidosis journal January 2010
Public Health Assessment of Potential Biological Terrorism Agents journal February 2002
Workshop on Treatment of and Postexposure Prophylaxis for Burkholderia pseudomallei and B. mallei Infection, 2010 journal December 2012
Biological warfare agents journal January 2010
Increasing Incidence of Human Melioidosis in Northeast Thailand journal June 2010

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