Revised Draft Genome Sequences of Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643

Conners, Eric M.; Davenport, Emily J.; Bose, Arpita; Maresca, ed., Julia A.

doi:10.1128/MRA.00022-21

Title: Revised Draft Genome Sequences of Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643

Abstract

ABSTRACT Recent attempts to sequence regions of the Rhodomicrobium vannielii ATCC 17100 genome revealed discrepancies with the previously published genome. We report the revised draft genome sequences of the type strains Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643. These revisions will facilitate genetic studies of phototrophic metabolism in these bacteria.

Authors:

; Davenport, Emily J.;

; Maresca, ed., Julia A.

Publication Date:: Thu Apr 01 00:00:00 EDT 2021

Sponsoring Org.:: USDOE

OSTI Identifier:: 1773532

Grant/Contract Number:: DESC0014613

Resource Type:: Published Article

Journal Name:: Microbiology Resource Announcements

Additional Journal Information:: Journal Name: Microbiology Resource Announcements Journal Volume: 10 Journal Issue: 13; Journal ID: ISSN 2576-098X

Publisher:: American Society for Microbiology

Country of Publication:: United States

Language:: English

Citation Formats


                    Conners, Eric M., Davenport, Emily J., Bose, Arpita, and Maresca, ed., Julia A. Revised Draft Genome Sequences of Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643.  United States: N. p., 2021. 
Web.  doi:10.1128/MRA.00022-21.

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                    Conners, Eric M., Davenport, Emily J., Bose, Arpita, & Maresca, ed., Julia A. Revised Draft Genome Sequences of Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643.  United States.  https://doi.org/10.1128/MRA.00022-21

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                    Conners, Eric M., Davenport, Emily J., Bose, Arpita, and Maresca, ed., Julia A. Thu .  
"Revised Draft Genome Sequences of Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643".  United States.  https://doi.org/10.1128/MRA.00022-21.

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@article{osti_1773532,

  title        = {Revised Draft Genome Sequences of Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643},

  author       = {Conners, Eric M. and Davenport, Emily J. and Bose, Arpita and Maresca, ed., Julia A.},

  abstractNote = {ABSTRACT Recent attempts to sequence regions of the Rhodomicrobium vannielii ATCC 17100 genome revealed discrepancies with the previously published genome. We report the revised draft genome sequences of the type strains Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643. These revisions will facilitate genetic studies of phototrophic metabolism in these bacteria.},

  doi          = {10.1128/MRA.00022-21},

  journal      = {Microbiology Resource Announcements},

  number       = 13,

  volume       = 10,

  place        = {United States},

  year         = {Thu Apr 01 00:00:00 EDT 2021},

  month        = {Thu Apr 01 00:00:00 EDT 2021}

}

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Works referenced in this record:

Pyrosequencing-Based Comparative Genome Analysis of Vibrio vulnificus Environmental Isolates
journal, May 2012

Morrison, Shatavia S.; Williams, Tiffany; Cain, Aurora
PLoS ONE, Vol. 7, Issue 5
DOI: 10.1371/journal.pone.0037553

Draft Genome Sequence of Rhodomicrobium udaipurense JA643T with Special Reference to Hopanoid Biosynthesis
journal, August 2014

Tushar, L.; Sasikala, Ch.; Ramana, Ch. V.
DNA Research, Vol. 21, Issue 6
DOI: 10.1093/dnares/dsu026

QUAST: quality assessment tool for genome assemblies
journal, February 2013

Gurevich, Alexey; Saveliev, Vladislav; Vyahhi, Nikolay
Bioinformatics, Vol. 29, Issue 8
DOI: 10.1093/bioinformatics/btt086

Photoferrotrophs Produce a PioAB Electron Conduit for Extracellular Electron Uptake
journal, November 2019

Gupta, Dinesh; Sutherland, Molly C.; Rengasamy, Karthikeyan
mBio, Vol. 10, Issue 6
DOI: 10.1128/mBio.02668-19

NCBI prokaryotic genome annotation pipeline
journal, June 2016

Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat
Nucleic Acids Research, Vol. 44, Issue 14
DOI: 10.1093/nar/gkw569

Anaerobic oxidation of ferrous iron by purple bacteria, a new type of phototrophic metabolism.
journal, January 1994

Ehrenreich, A.; Widdel, F.
Applied and Environmental Microbiology, Vol. 60, Issue 12
DOI: 10.1128/AEM.60.12.4517-4526.1994

Morphogenesis and differentiation in Rhodomicrobium vannielii and other budding and prosthecate bacteria.
journal, January 1977

Whittenbury, R.; Dow, C. S.
Bacteriological Reviews, Vol. 41, Issue 3
DOI: 10.1128/BR.41.3.754-808.1977

OrthoANI: An improved algorithm and software for calculating average nucleotide identity
journal, February 2016

Lee, Imchang; Ouk Kim, Yeong; Park, Sang-Cheol
International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 2
DOI: 10.1099/ijsem.0.000760

Growth and Ultrastructure of Rhodomicrobium vannielii as a Function of Light Intensity
journal, January 1967

Trentini, William C.; Starr, Mortimer P.
Journal of Bacteriology, Vol. 93, Issue 5
DOI: 10.1128/JB.93.5.1699-1704.1967

Comparing de novo assemblers for 454 transcriptome data
journal, January 2010

Kumar, Sujai; Blaxter, Mark L.
BMC Genomics, Vol. 11, Issue 1
DOI: 10.1186/1471-2164-11-571

Trimmomatic: a flexible trimmer for Illumina sequence data
journal, April 2014

Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern
Bioinformatics, Vol. 30, Issue 15
DOI: 10.1093/bioinformatics/btu170

Basic local alignment search tool
journal, October 1990

Altschul, Stephen F.; Gish, Warren; Miller, Webb
Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410
DOI: 10.1016/S0022-2836(05)80360-2

Rhodomicrobium lacus sp. nov., an alkalitolerent bacterium isolated from Umiam lake, Shillong, India
journal, January 2020

G., Suresh; Kumar, Dhanesh; Uppada, Jagadeeshwari
International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 1
DOI: 10.1099/ijsem.0.003813

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Similar Records

Title: Revised Draft Genome Sequences of Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643

Abstract

Citation Formats

Pyrosequencing-Based Comparative Genome Analysis of Vibrio vulnificus Environmental Isolates journal, May 2012

Draft Genome Sequence of Rhodomicrobium udaipurense JA643T with Special Reference to Hopanoid Biosynthesis journal, August 2014

QUAST: quality assessment tool for genome assemblies journal, February 2013

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journal, August 2014

QUAST: quality assessment tool for genome assemblies
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NCBI prokaryotic genome annotation pipeline
journal, June 2016

Anaerobic oxidation of ferrous iron by purple bacteria, a new type of phototrophic metabolism.
journal, January 1994

Morphogenesis and differentiation in Rhodomicrobium vannielii and other budding and prosthecate bacteria.
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Growth and Ultrastructure of Rhodomicrobium vannielii as a Function of Light Intensity
journal, January 1967

Comparing de novo assemblers for 454 transcriptome data
journal, January 2010

Trimmomatic: a flexible trimmer for Illumina sequence data
journal, April 2014

Basic local alignment search tool
journal, October 1990

Rhodomicrobium lacus sp. nov., an alkalitolerent bacterium isolated from Umiam lake, Shillong, India
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