Illustrated formalisms for total scattering data: a guide for new practitioners
Abstract
The total scattering method is the simultaneous study of both the real- and reciprocal-space representations of diffraction data. While conventional Bragg-scattering analysis (employing methods such as Rietveld refinement) provides insight into the average structure of the material, pair distribution function (PDF) analysis allows for a more focused study of the local atomic arrangement of a material. Generically speaking, a PDF is generated by Fourier transforming the total measured reciprocal-space diffraction data (Bragg and diffuse) into a real-space representation. However, the details of the transformation employed and, by consequence, the resultant appearance and weighting of the real-space representation of the system can vary between different research communities. As the worldwide total scattering community continues to grow, these subtle differences in nomenclature and data representation have led to conflicting and confusing descriptions of how the PDF is defined and calculated. This paper provides a consistent derivation of many of these different forms of the PDF and the transformations required to bridge between them. Some general considerations and advice for total scattering practitioners in selecting and defining the appropriate choice of PDF in their own research are presented. This contribution aims to benefit people starting in the field or trying to compare theirmore »
- Authors:
- Publication Date:
- Research Org.:
- Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States); Brookhaven National Laboratory (BNL), Upton, NY (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1761551
- Alternate Identifier(s):
- OSTI ID: 1763496; OSTI ID: 1785944
- Report Number(s):
- BNL-221575-2021-JAAM
Journal ID: ISSN 1600-5767; PII: S1600576720015630
- Grant/Contract Number:
- AC05-00OR22725; SC0012704
- Resource Type:
- Published Article
- Journal Name:
- Journal of Applied Crystallography (Online)
- Additional Journal Information:
- Journal Name: Journal of Applied Crystallography (Online) Journal Volume: 54 Journal Issue: 1; Journal ID: ISSN 1600-5767
- Publisher:
- International Union of Crystallography
- Country of Publication:
- Denmark
- Language:
- English
- Subject:
- 97 MATHEMATICS AND COMPUTING; 36 MATERIALS SCIENCE; total scattering; pair distribution function.
Citation Formats
Peterson, Peter F., Olds, Daniel, McDonnell, Marshall T., and Page, Katharine. Illustrated formalisms for total scattering data: a guide for new practitioners. Denmark: N. p., 2021.
Web. doi:10.1107/s1600576720015630.
Peterson, Peter F., Olds, Daniel, McDonnell, Marshall T., & Page, Katharine. Illustrated formalisms for total scattering data: a guide for new practitioners. Denmark. https://doi.org/10.1107/s1600576720015630
Peterson, Peter F., Olds, Daniel, McDonnell, Marshall T., and Page, Katharine. Mon .
"Illustrated formalisms for total scattering data: a guide for new practitioners". Denmark. https://doi.org/10.1107/s1600576720015630.
@article{osti_1761551,
title = {Illustrated formalisms for total scattering data: a guide for new practitioners},
author = {Peterson, Peter F. and Olds, Daniel and McDonnell, Marshall T. and Page, Katharine},
abstractNote = {The total scattering method is the simultaneous study of both the real- and reciprocal-space representations of diffraction data. While conventional Bragg-scattering analysis (employing methods such as Rietveld refinement) provides insight into the average structure of the material, pair distribution function (PDF) analysis allows for a more focused study of the local atomic arrangement of a material. Generically speaking, a PDF is generated by Fourier transforming the total measured reciprocal-space diffraction data (Bragg and diffuse) into a real-space representation. However, the details of the transformation employed and, by consequence, the resultant appearance and weighting of the real-space representation of the system can vary between different research communities. As the worldwide total scattering community continues to grow, these subtle differences in nomenclature and data representation have led to conflicting and confusing descriptions of how the PDF is defined and calculated. This paper provides a consistent derivation of many of these different forms of the PDF and the transformations required to bridge between them. Some general considerations and advice for total scattering practitioners in selecting and defining the appropriate choice of PDF in their own research are presented. This contribution aims to benefit people starting in the field or trying to compare their results with those of other researchers.},
doi = {10.1107/s1600576720015630},
journal = {Journal of Applied Crystallography (Online)},
number = 1,
volume = 54,
place = {Denmark},
year = {Mon Feb 01 00:00:00 EST 2021},
month = {Mon Feb 01 00:00:00 EST 2021}
}
https://doi.org/10.1107/s1600576720015630
Works referenced in this record:
The new glass, liquids and amorphous materials diffractometer (GLAD) at IPNS
journal, June 1993
- Ellison, A. J. G.; Crawford, R. K.; Montague, D. G.
- Journal of Neutron Research, Vol. 1, Issue 4
Reverse Monte Carlo Simulation: A New Technique for the Determination of Disordered Structures
journal, December 1988
- McGreevy, R. L.; Pusztai, L.
- Molecular Simulation, Vol. 1, Issue 6
Computer "Experiments" on Classical Fluids. I. Thermodynamical Properties of Lennard-Jones Molecules
journal, July 1967
- Verlet, Loup
- Physical Review, Vol. 159, Issue 1
Reverse Monte Carlo modelling
journal, November 2001
- McGreevy, R. L.
- Journal of Physics: Condensed Matter, Vol. 13, Issue 46
Pressure/temperature fluid cell apparatus for the neutron powder diffractometer instrument: Probing atomic structure in situ
journal, December 2014
- Wang, Hsiu-Wen; Fanelli, Victor R.; Reiche, Helmut M.
- Review of Scientific Instruments, Vol. 85, Issue 12
The Problem with Determining Atomic Structure at the Nanoscale
journal, April 2007
- Billinge, S. J. L.; Levin, I.
- Science, Vol. 316, Issue 5824
New Insights into Complex Materials Using Reverse Monte Carlo Modeling
journal, July 2014
- Playford, Helen Y.; Owen, Lewis R.; Levin, Igor
- Annual Review of Materials Research, Vol. 44, Issue 1
PDFFIT , a program for full profile structural refinement of the atomic pair distribution function
journal, June 1999
- Proffen, Th.; Billinge, S. J. L.
- Journal of Applied Crystallography, Vol. 32, Issue 3
Inelasticity corrections for time-of-flight and fixed wavelength neutron diffraction experiments
journal, August 2009
- Soper, A. K.
- Molecular Physics, Vol. 107, Issue 16
Numerical Evaluation of X‐Ray Absorption Factors for Cylindrical Samples and Annular Sample Cells
journal, August 1962
- Paalman, H. H.; Pings, C. J.
- Journal of Applied Physics, Vol. 33, Issue 8
X-Ray Determination of Electron-Density Distributions in Oxides, MgO, MnO, CoO, and NiO, and Atomic Scattering Factors of their Constituent Atoms
journal, January 1979
- Sasaki, Satoshi; Fujino, Kiyoshi; TakÉUchi, Yoshio
- Proceedings of the Japan Academy. Ser. B: Physical and Biological Sciences, Vol. 55, Issue 2
PDFgetX3 : a rapid and highly automatable program for processing powder diffraction data into total scattering pair distribution functions
journal, March 2013
- Juhás, P.; Davis, T.; Farrow, C. L.
- Journal of Applied Crystallography, Vol. 46, Issue 2
Measuring Correlated Atomic Motion Using X-ray Diffraction
journal, February 1999
- Jeong, Il-Kyoung; Proffen, Thomas; Mohiuddin-Jacobs, Farida
- The Journal of Physical Chemistry A, Vol. 103, Issue 7
The analysis of a time-of-flight neutron diffractometer for amorphous materials: the structure of a molecule in a liquid
journal, December 1973
- Powles, J. G.
- Molecular Physics, Vol. 26, Issue 6
Zerstreuung von Röntgenstrahlen
journal, January 1915
- Debye, P.
- Annalen der Physik, Vol. 351, Issue 6
Fast Parallel Algorithms for Short-Range Molecular Dynamics
journal, March 1995
- Plimpton, Steve
- Journal of Computational Physics, Vol. 117, Issue 1
Neutron and x-ray diffraction studies of liquids and glasses
journal, November 2005
- Fischer, Henry E.; Barnes, Adrian C.; Salmon, Philip S.
- Reports on Progress in Physics, Vol. 69, Issue 1
Neutron scattering from vitreous silica. V. The structure of vitreous silica: What have we learned from 60 years of diffraction studies?
journal, November 1994
- Wright, Adrian C.
- Journal of Non-Crystalline Solids, Vol. 179
Applications of pair distribution function methods to contemporary problems in materials chemistry
journal, January 2011
- Young, Callum A.; Goodwin, Andrew L.
- Journal of Materials Chemistry, Vol. 21, Issue 18
Towards a robust ad hoc data correction approach that yields reliable atomic pair distribution functions from powder diffraction data
journal, October 2013
- Billinge, Simon J. L.; Farrow, Christopher L.
- Journal of Physics: Condensed Matter, Vol. 25, Issue 45
The normalization of diffraction from porous non-crystalline systems
journal, December 1984
- Mildner, D. F. R.; Carpenter, J. M.
- Journal of Non-Crystalline Solids, Vol. 69, Issue 1
Diffraction Pattern and Structure of Noncrystalline BeF 2 and SiO 2 at 25°C
journal, March 1972
- Narten, A. H.
- The Journal of Chemical Physics, Vol. 56, Issue 5
X‐Ray Determination of the Structure of Liquids and Glass
journal, October 1937
- Warren, B. E.
- Journal of Applied Physics, Vol. 8, Issue 10
Neutron scattering lengths and cross sections
journal, January 1992
- Sears, Varley F.
- Neutron News, Vol. 3, Issue 3
A theory of the electrical properties of liquid metals: III. the resistivity of binary alloys
journal, January 1965
- Faber, T. E.; Ziman, J. M.
- Philosophical Magazine, Vol. 11, Issue 109
Precise implications for real-space pair distribution function modeling of effects intrinsic to modern time-of-flight neutron diffractometers
journal, June 2018
- Olds, Daniel; Saunders, Claire N.; Peters, Megan
- Acta Crystallographica Section A Foundations and Advances, Vol. 74, Issue 4
PDFgetX2: a GUI-driven program to obtain the pair distribution function from X-ray powder diffraction data
journal, July 2004
- Qiu, Xiangyun; Thompson, Jeroen W.; Billinge, Simon J. L.
- Journal of Applied Crystallography, Vol. 37, Issue 4, p. 678-678
The analysis of liquid structure data from time-of-flight neutron diffractometry
journal, June 1989
- Howe, M. A.; McGreevy, R. L.; Howells, W. S.
- Journal of Physics: Condensed Matter, Vol. 1, Issue 22
Slow neutron scattering by molecules: IV. Recoil corrections for diatomic molecules—time of flight
journal, October 1978
- Powles, J. G.
- Molecular Physics, Vol. 36, Issue 4
Zur Frage der Einwirkung der W�rmebewegung auf die Interferenz von R�ntgenstrahlen
journal, December 1923
- Waller, Ivar
- Zeitschrift f�r Physik, Vol. 17, Issue 1
Structural studies of disordered materials using high-energy x-ray diffraction from ambient to extreme conditions
journal, November 2007
- Kohara, Shinji; Itou, Masayoshi; Suzuya, Kentaro
- Journal of Physics: Condensed Matter, Vol. 19, Issue 50
A unified formulation of the constant temperature molecular dynamics methods
journal, July 1984
- Nosé, Shuichi
- The Journal of Chemical Physics, Vol. 81, Issue 1
Relationship between the atomic pair distribution function and small-angle scattering: implications for modeling of nanoparticles
journal, April 2009
- Farrow, Christopher L.; Billinge, Simon J. L.
- Acta Crystallographica Section A Foundations of Crystallography, Vol. 65, Issue 3, p. 232-239
A comparison of various commonly used correlation functions for describing total scattering
journal, April 2001
- Keen, David A.
- Journal of Applied Crystallography, Vol. 34, Issue 2
Neutron and X-ray diffraction studies of the structure of non-crystalline materials
journal, November 1985
- Wagner, C. N. J.
- Journal of Non-Crystalline Solids, Vol. 76, Issue 1
Structural Quantum Effects in Hydrogeneous Liquids and Glasses Part II Experiments using Synchrotron Radiation
journal, January 2003
- Egelstaff, P. A.
- Physics and Chemistry of Liquids, Vol. 41, Issue 2
Lattice dynamics and correlated atomic motion from the atomic pair distribution function
journal, March 2003
- Jeong, I. -K.; Heffner, R. H.; Graf, M. J.
- Physical Review B, Vol. 67, Issue 10
Treatment of hydrogen background in bulk and nanocrystalline neutron total scattering experiments
journal, May 2011
- Page, Katharine; White, Claire E.; Estell, Eben G.
- Journal of Applied Crystallography, Vol. 44, Issue 3
Interpretation of atomic displacement parameters from diffraction studies of crystals
journal, February 1988
- Dunitz, Jack D.; Schomaker, Verner; Trueblood, Kenneth N.
- The Journal of Physical Chemistry, Vol. 92, Issue 4
DShaper : an approach for handling missing low- Q data in pair distribution function analysis of nanostructured systems
journal, October 2015
- Olds, Daniel; Wang, Hsiu-Wen; Page, Katharine
- Journal of Applied Crystallography, Vol. 48, Issue 6
Neutron scattering studies of network glasses
journal, October 1989
- Wright, Adrian C.; Clare, Alexis G.; Grimley, David I.
- Journal of Non-Crystalline Solids, Vol. 112, Issue 1-3
PDFgetN : a user-friendly program to extract the total scattering structure factor and the pair distribution function from neutron powder diffraction data
journal, August 2000
- Peterson, P. F.; Gutmann, M.; Proffen, Th.
- Journal of Applied Crystallography, Vol. 33, Issue 4
The Diffraction of X-Rays in Glass
journal, May 1934
- Warren, B. E.
- Physical Review, Vol. 45, Issue 10
Structure Factor and Radial Distribution Function for Liquid Argon at 85 °K
journal, June 1973
- Yarnell, J. L.; Katz, M. J.; Wenzel, R. G.
- Physical Review A, Vol. 7, Issue 6
The atomic and electronic structure of liquid N-methylformamide as determined from diffraction experiments
journal, January 1996
- Neuefeind, J.
- Molecular Physics, Vol. 87, Issue 1
Quantum effects in the structure of water measured by gamma ray diffraction
journal, November 1986
- Root, J. H.; Egelstaff, P. A.; Hime, A.
- Chemical Physics, Vol. 109, Issue 2-3
RMC: progress, problems and prospects
journal, January 1995
- McGreevy, R. L.
- Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 354, Issue 1
Diffraction studies of glass structure
journal, August 1990
- Wright, Adrian C.
- Journal of Non-Crystalline Solids, Vol. 123, Issue 1-3
High energy XRD investigations of liquids
journal, May 2002
- Neuefeind, J.
- Journal of Molecular Liquids, Vol. 98-99
Room-temperature compressibilities of MnO and CdO: further examination of the role of cation type in bulk modulus systematics
journal, September 1999
- Zhang, Jianzhong
- Physics and Chemistry of Minerals, Vol. 26, Issue 8
The Nanoscale Ordered MAterials Diffractometer NOMAD at the Spallation Neutron Source SNS
journal, September 2012
- Neuefeind, Jörg; Feygenson, Mikhail; Carruth, John
- Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, Vol. 287
Reciprocal-space instrumental effects on the real-space neutron atomic pair distribution function
journal, January 2004
- Qiu, Xiangyun; Božin, Emil S.; Juhas, Pavol
- Journal of Applied Crystallography, Vol. 37, Issue 1
Slow-neutron scattering by molecules: III. Recoil corrections for diatomic molecules—reactors
journal, October 1978
- Powles, J. G.
- Molecular Physics, Vol. 36, Issue 4
Radial distribution function and structural relaxation in amorphous solids
journal, December 1981
- Srolovitz, D.; Egami, T.; Vitek, V.
- Physical Review B, Vol. 24, Issue 12
RMCProfile: reverse Monte Carlo for polycrystalline materials
journal, July 2007
- Tucker, Matthew G.; Keen, David A.; Dove, Martin T.
- Journal of Physics: Condensed Matter, Vol. 19, Issue 33
PDFfit2 and PDFgui: computer programs for studying nanostructure in crystals
journal, July 2007
- Farrow, C. L.; Juhas, P.; Liu, J. W.
- Journal of Physics: Condensed Matter, Vol. 19, Issue 33
Canonical dynamics: Equilibrium phase-space distributions
journal, March 1985
- Hoover, William G.
- Physical Review A, Vol. 31, Issue 3
PDFgetX : a program for obtaining the atomic pair distribution function from X-ray powder diffraction data
journal, July 2001
- Jeong, I. -K.; Thompson, J.; Proffen, Th.
- Journal of Applied Crystallography, Vol. 34, Issue 4
Improved measures of quality for the atomic pair distribution function
journal, January 2003
- Peterson, Peter F.; Božin, Emil S.; Proffen, Thomas
- Journal of Applied Crystallography, Vol. 36, Issue 1
Radiation scattering data on liquid metals
journal, April 1967
- Egelstaff, P. A.
- Advances in Physics, Vol. 16, Issue 62
Local Structure of Ferroelectric Materials
journal, August 2007
- Egami, T.
- Annual Review of Materials Research, Vol. 37, Issue 1
A profile refinement method for nuclear and magnetic structures
journal, June 1969
- Rietveld, H. M.
- Journal of Applied Crystallography, Vol. 2, Issue 2, p. 65-71
Die Beugung von Röntgenstrahlen in Flüssigkeiten als Effekt der Molekülanordnung
journal, June 1927
- Zernike, F.; Prins, J. A.
- Zeitschrift für Physik A Hadrons and nuclei, Vol. 41, Issue 2-3
Short-range atomic structure of determined by real-space refinement of neutron-powder-diffraction data
journal, June 1993
- Billinge, S. J. L.; Egami, T.
- Physical Review B, Vol. 47, Issue 21
Local structures of perovskite dielectrics and ferroelectrics via pair distribution function analyses
journal, April 2018
- Hou, Dong; Zhao, Changhao; Paterson, Alisa R.
- Journal of the European Ceramic Society, Vol. 38, Issue 4
Structural Aspects of the Electrical Resistivity of Binary Alloys
journal, October 1970
- Bhatia, A. B.; Thornton, D. E.
- Physical Review B, Vol. 2, Issue 8
Interferenz von Röntgenstrahlen und Wärmebewegung
journal, January 1913
- Debye, P.
- Annalen der Physik, Vol. 348, Issue 1
The atomic pair distribution function: past and present
journal, January 2004
- Billinge, Simon
- Zeitschrift für Kristallographie - Crystalline Materials, Vol. 219, Issue 3, p. 117-121
Structure of Binary Liquid Mixtures. I
journal, April 1967
- Ashcroft, N. W.; Langreth, David C.
- Physical Review, Vol. 156, Issue 3