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Title: Nitrate bioreduction dynamics in hyporheic zone sediments under cyclic changes of chemical compositions

Authors:
ORCiD logo; ; ; ; ; ; ; ;
Publication Date:
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1702399
Resource Type:
Publisher's Accepted Manuscript
Journal Name:
Journal of Hydrology
Additional Journal Information:
Journal Name: Journal of Hydrology Journal Volume: 585 Journal Issue: C; Journal ID: ISSN 0022-1694
Publisher:
Elsevier
Country of Publication:
Netherlands
Language:
English

Citation Formats

Li, Minjing, Li, Rong, Gao, Yuqian, Resch, Charles T., Qian, Wei-Jun, Shi, Tujin, Shi, Liang, Liu, Hui, and Liu, Chongxuan. Nitrate bioreduction dynamics in hyporheic zone sediments under cyclic changes of chemical compositions. Netherlands: N. p., 2020. Web. doi:10.1016/j.jhydrol.2020.124836.
Li, Minjing, Li, Rong, Gao, Yuqian, Resch, Charles T., Qian, Wei-Jun, Shi, Tujin, Shi, Liang, Liu, Hui, & Liu, Chongxuan. Nitrate bioreduction dynamics in hyporheic zone sediments under cyclic changes of chemical compositions. Netherlands. https://doi.org/10.1016/j.jhydrol.2020.124836
Li, Minjing, Li, Rong, Gao, Yuqian, Resch, Charles T., Qian, Wei-Jun, Shi, Tujin, Shi, Liang, Liu, Hui, and Liu, Chongxuan. Mon . "Nitrate bioreduction dynamics in hyporheic zone sediments under cyclic changes of chemical compositions". Netherlands. https://doi.org/10.1016/j.jhydrol.2020.124836.
@article{osti_1702399,
title = {Nitrate bioreduction dynamics in hyporheic zone sediments under cyclic changes of chemical compositions},
author = {Li, Minjing and Li, Rong and Gao, Yuqian and Resch, Charles T. and Qian, Wei-Jun and Shi, Tujin and Shi, Liang and Liu, Hui and Liu, Chongxuan},
abstractNote = {},
doi = {10.1016/j.jhydrol.2020.124836},
journal = {Journal of Hydrology},
number = C,
volume = 585,
place = {Netherlands},
year = {Mon Jun 01 00:00:00 EDT 2020},
month = {Mon Jun 01 00:00:00 EDT 2020}
}

Works referenced in this record:

Hyporheic flow and transport processes: Mechanisms, models, and biogeochemical implications: HYPORHEIC FLOW AND TRANSPORT PROCESSES
journal, October 2014

  • Boano, F.; Harvey, J. W.; Marion, A.
  • Reviews of Geophysics, Vol. 52, Issue 4
  • DOI: 10.1002/2012RG000417

Relative Abundances of Proteobacterial Membrane-Bound and Periplasmic Nitrate Reductases in Selected Environments
journal, July 2007

  • Bru, D.; Sarr, A.; Philippot, L.
  • Applied and Environmental Microbiology, Vol. 73, Issue 18
  • DOI: 10.1128/AEM.00643-07

Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism.
journal, January 1994


Implication of Using Different Carbon Sources for Denitrification in Wastewater Treatments
journal, August 2009


Seasonal hyporheic dynamics control coupled microbiology and geochemistry in Colorado River sediments: COLORADO RIVER SEDIMENT BIOGEOCHEMISTRY
journal, December 2016

  • Danczak, Robert E.; Sawyer, Audrey H.; Williams, Kenneth H.
  • Journal of Geophysical Research: Biogeosciences, Vol. 121, Issue 12
  • DOI: 10.1002/2016JG003527

Oxygen regulation of nitrate transport by diversion of electron flow in Escherichia coli.
journal, October 1990


Oxygen-Dependent Control of Respiratory Nitrate Reduction in Mycelium of Streptomyces coelicolor A3(2)
journal, September 2014

  • Fischer, M.; Falke, D.; Pawlik, T.
  • Journal of Bacteriology, Vol. 196, Issue 23
  • DOI: 10.1128/JB.02202-14

The effects of sediment depth and oxygen concentration on the use of organic matter: An experimental study using an infiltration sediment tank
journal, January 2016


Bacterial nitrate reductases: Molecular and biological aspects of nitrate reduction
journal, May 2006


The importance and challenge of hyporheic mixing: HYPORHEIC MIXING
journal, May 2017

  • Hester, Erich T.; Cardenas, M. Bayani; Haggerty, Roy
  • Water Resources Research, Vol. 53, Issue 5
  • DOI: 10.1002/2016WR020005

Aerobic denitrification: A review of important advances of the last 30 years
journal, August 2015


Nitrous oxide emission during wastewater treatment
journal, September 2009


Hyporheic hot moments: Dissolved oxygen dynamics in the hyporheic zone in response to surface flow perturbations: DISSOLVED OXYGEN DYNAMICS IN THE HYPORHEIC ZONE
journal, August 2017

  • Kaufman, Matthew H.; Cardenas, M. Bayani; Buttles, Jim
  • Water Resources Research, Vol. 53, Issue 8
  • DOI: 10.1002/2016WR020296

Nitrate transformation and immobilization in particulate organic matter incubations: Influence of redox, iron and (a)biotic conditions
journal, July 2019


Aerobic and anaerobic decomposition of organic matter in marine sediment: Which is fastest?
journal, December 1995

  • Kristensen, Erik; Ahmed, Saiyed I.; Devol, Allan H.
  • Limnology and Oceanography, Vol. 40, Issue 8
  • DOI: 10.4319/lo.1995.40.8.1430

Microbial nitrate respiration – Genes, enzymes and environmental distribution
journal, August 2011


Influence of alternating oxic/anoxic conditions on growth of denitrifying bacteria
journal, March 2010


Functional Enzyme-Based Approach for Linking Microbial Community Functions with Biogeochemical Process Kinetics
journal, September 2017

  • Li, Minjing; Qian, Wei-jun; Gao, Yuqian
  • Environmental Science & Technology, Vol. 51, Issue 20
  • DOI: 10.1021/acs.est.7b03158

Effect of Water Chemistry and Hydrodynamics on Nitrogen Transformation Activity and Microbial Community Functional Potential in Hyporheic Zone Sediment Columns
journal, April 2017

  • Liu, Yuanyuan; Liu, Chongxuan; Nelson, William C.
  • Environmental Science & Technology, Vol. 51, Issue 9
  • DOI: 10.1021/acs.est.6b05018

Coupled Hydro-Biogeochemical Processes Controlling Cr Reductive Immobilization in Columbia River Hyporheic Zone
journal, January 2017

  • Liu, Yuanyuan; Xu, Fen; Liu, Chongxuan
  • Environmental Science & Technology, Vol. 51, Issue 3
  • DOI: 10.1021/acs.est.6b05099

Nitrate and nitrite transport in bacteria
journal, February 2001

  • Moir*, J. W. B.; Wood, N. J.
  • Cellular and Molecular Life Sciences, Vol. 58, Issue 2
  • DOI: 10.1007/PL00000849

The Growth of Bacterial Cultures
journal, October 1949


Prokaryotic Nitrate Reduction: Molecular Properties and Functional Distinction among Bacterial Nitrate Reductases
journal, November 1999


Variability of streambed hydraulic conductivity in an intermittent stream reach regulated by Vented Dams: A case study
journal, July 2018


Manganese and cobalt redox cycling in laterites; Biogeochemical and bioprocessing implications
journal, January 2020


Validity of Monod kinetics at different sludge ages – Peptone biodegradation under aerobic conditions
journal, December 2009


Denitrification under various aeration conditions in Comamonas sp., strain SGLY2
journal, April 1994


Nitrous oxide from streams and rivers: A review of primary biogeochemical pathways and environmental variables
journal, April 2019


Gene-centric approach to integrating environmental genomics and biogeochemical models
journal, January 2014

  • Reed, Daniel C.; Algar, Christopher K.; Huber, Julie A.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 5
  • DOI: 10.1073/pnas.1313713111

Nitrate attenuation in groundwater: A review of biogeochemical controlling processes
journal, October 2008


Aerobic denitrification: a controversy revived
journal, November 1984

  • Robertson, Lesley A.; Kuenen, J. Gijs
  • Archives of Microbiology, Vol. 139, Issue 4
  • DOI: 10.1007/BF00408378

Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed
journal, December 2014

  • Rocca, Jennifer D.; Hall, Edward K.; Lennon, Jay T.
  • The ISME Journal, Vol. 9, Issue 8
  • DOI: 10.1038/ismej.2014.252

Hyporheic Exchange Controls Fate of Trace Organic Compounds in an Urban Stream
journal, October 2018

  • Schaper, Jonas L.; Posselt, Malte; McCallum, James L.
  • Environmental Science & Technology, Vol. 52, Issue 21
  • DOI: 10.1021/acs.est.8b03117

Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum
journal, September 2012

  • Shi, T.; Fillmore, T. L.; Sun, X.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 38
  • DOI: 10.1073/pnas.1204366109

Dynamic Hyporheic Zones: Exploring the Role of Peak Flow Events on Bedform‐Induced Hyporheic Exchange
journal, January 2019

  • Singh, Tanu; Wu, Liwen; Gomez‐Velez, Jesus D.
  • Water Resources Research, Vol. 55, Issue 1
  • DOI: 10.1029/2018WR022993

Nitrate and periplasmic nitrate reductases
journal, January 2014

  • Sparacino-Watkins, Courtney; Stolz, John F.; Basu, Partha
  • Chem. Soc. Rev., Vol. 43, Issue 2
  • DOI: 10.1039/C3CS60249D

Hydrologic Controls on Nitrogen Cycling Processes and Functional Gene Abundance in Sediments of a Groundwater Flow-Through Lake
journal, March 2016

  • Stoliker, Deborah L.; Repert, Deborah A.; Smith, Richard L.
  • Environmental Science & Technology, Vol. 50, Issue 7
  • DOI: 10.1021/acs.est.5b06155

Micro scale exchange processes between surface and subsurface water
journal, December 2002


Sulfur-based denitrification: Effect of biofilm development on denitrification fluxes
journal, September 2016


Sources and seasonal patterns of dissolved organic matter (DOM) in the hyporheic zone
journal, October 2009


Redox transformation and reductive immobilization of Cr(VI) in the Columbia River hyporheic zone sediments
journal, December 2017