Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry
Abstract
The production of novel composite materials, assembled using biomimetic polymers known as peptoids (N-substituted glycines) to nucleate CaCO3, can open new pathways for advanced material design. However, a better understanding of the heterogeneous CaCO3 nucleation process is a necessary first step. We determined the thermodynamic and kinetic parameters for calcite nucleation on self-assembled monolayers (SAMs) of nanosheet-forming peptoid polymers and simpler, alkanethiol analogues. We used nucleation rate studies to determine the net interfacial free energy (γnet) for the peptoid-calcite interface and for SAMs terminated with carboxyl headgroups, amine headgroups, or a mix of the two. We compared the results with γnet determined from dynamic force spectroscopy (DFS) and from density functional theory (DFT), using COSMO-RS simulations. Calcite nucleation has a lower thermodynamic barrier on the peptoid surface than on carboxyl and amine SAMs. From the relationship between nucleation rate (J0) and saturation state, we found that under low-saturation conditions, i.e. <3.3 (pH 9.0), nucleation on the peptoid substrate was faster than that on all of the model surfaces, indicating a thermodynamic drive toward heterogeneous nucleation. When they are taken together, our results indicate that nanosheet-forming peptoid monolayers can serve as an organic template for CaCO3 polymorph growth.
- Authors:
-
- Nano-Science Center, Department of Chemistry, University of Copenhagen, Copenhagen, Denmark
- Biological Nanostructures Facility, The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, California, United States
- Department of Geography & Earth Sciences, Aberystwyth University, Aberystwyth, United Kingdom
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES); European Research Council (ERC)
- OSTI Identifier:
- 1698055
- Alternate Identifier(s):
- OSTI ID: 1760251
- Grant/Contract Number:
- AC02-05CH11231; 3517; 663830
- Resource Type:
- Published Article
- Journal Name:
- Crystal Growth and Design
- Additional Journal Information:
- Journal Name: Crystal Growth and Design Journal Volume: 20 Journal Issue: 6; Journal ID: ISSN 1528-7483
- Publisher:
- American Chemical Society
- Country of Publication:
- France
- Language:
- English
- Subject:
- 36 MATERIALS SCIENCE
Citation Formats
Nielsen, Anne R., Jelavić, Stanislav, Murray, Daniel, Rad, Behzad, Andersson, Martin P., Ceccato, Marcel, Mitchell, Andrew C., Stipp, Susan L. S., Zuckermann, Ronald N., and Sand, Karina K. Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry. France: N. p., 2020.
Web. doi:10.1021/acs.cgd.0c00029.
Nielsen, Anne R., Jelavić, Stanislav, Murray, Daniel, Rad, Behzad, Andersson, Martin P., Ceccato, Marcel, Mitchell, Andrew C., Stipp, Susan L. S., Zuckermann, Ronald N., & Sand, Karina K. Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry. France. https://doi.org/10.1021/acs.cgd.0c00029
Nielsen, Anne R., Jelavić, Stanislav, Murray, Daniel, Rad, Behzad, Andersson, Martin P., Ceccato, Marcel, Mitchell, Andrew C., Stipp, Susan L. S., Zuckermann, Ronald N., and Sand, Karina K. Fri .
"Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry". France. https://doi.org/10.1021/acs.cgd.0c00029.
@article{osti_1698055,
title = {Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry},
author = {Nielsen, Anne R. and Jelavić, Stanislav and Murray, Daniel and Rad, Behzad and Andersson, Martin P. and Ceccato, Marcel and Mitchell, Andrew C. and Stipp, Susan L. S. and Zuckermann, Ronald N. and Sand, Karina K.},
abstractNote = {The production of novel composite materials, assembled using biomimetic polymers known as peptoids (N-substituted glycines) to nucleate CaCO3, can open new pathways for advanced material design. However, a better understanding of the heterogeneous CaCO3 nucleation process is a necessary first step. We determined the thermodynamic and kinetic parameters for calcite nucleation on self-assembled monolayers (SAMs) of nanosheet-forming peptoid polymers and simpler, alkanethiol analogues. We used nucleation rate studies to determine the net interfacial free energy (γnet) for the peptoid-calcite interface and for SAMs terminated with carboxyl headgroups, amine headgroups, or a mix of the two. We compared the results with γnet determined from dynamic force spectroscopy (DFS) and from density functional theory (DFT), using COSMO-RS simulations. Calcite nucleation has a lower thermodynamic barrier on the peptoid surface than on carboxyl and amine SAMs. From the relationship between nucleation rate (J0) and saturation state, we found that under low-saturation conditions, i.e. <3.3 (pH 9.0), nucleation on the peptoid substrate was faster than that on all of the model surfaces, indicating a thermodynamic drive toward heterogeneous nucleation. When they are taken together, our results indicate that nanosheet-forming peptoid monolayers can serve as an organic template for CaCO3 polymorph growth.},
doi = {10.1021/acs.cgd.0c00029},
journal = {Crystal Growth and Design},
number = 6,
volume = 20,
place = {France},
year = {Fri Apr 24 00:00:00 EDT 2020},
month = {Fri Apr 24 00:00:00 EDT 2020}
}
https://doi.org/10.1021/acs.cgd.0c00029
Works referenced in this record:
Polysaccharide Effects on Calcite Growth: The Influence of Composition and Branching
journal, September 2012
- Nielsen, J. W.; Sand, K. K.; Pedersen, C. S.
- Crystal Growth & Design, Vol. 12, Issue 10
Reconciling disparate views of template-directed nucleation through measurement of calcite nucleation kinetics and binding energies
journal, January 2014
- Hamm, L. M.; Giuffre, A. J.; Han, N.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 4
Precipitation of calcium carbonate
journal, December 1982
- Söhnel, O.; Mullin, J. W.
- Journal of Crystal Growth, Vol. 60, Issue 2
First-Principles Prediction of Liquid/Liquid Interfacial Tension
journal, June 2014
- Andersson, M. P.; Bennetzen, M. V.; Klamt, A.
- Journal of Chemical Theory and Computation, Vol. 10, Issue 8
Biomimetic layer-by-layer assembly of artificial nacre
journal, January 2012
- Finnemore, Alexander; Cunha, Pedro; Shean, Tamaryn
- Nature Communications, Vol. 3, Issue 1
Assembly and molecular order of two-dimensional peptoid nanosheets through the oil–water interface
journal, September 2014
- Robertson, Ellen J.; Olivier, Gloria K.; Qian, Menglu
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 37
Calcium carbonate nucleation driven by ion binding in a biomimetic matrix revealed by in situ electron microscopy
journal, January 2015
- Smeets, Paul J. M.; Cho, Kang Rae; Kempen, Ralph G. E.
- Nature Materials, Vol. 14, Issue 4
A Mesocrystal-Like Morphology Formed by Classical Polymer-Mediated Crystal Growth
journal, September 2017
- Smeets, Paul J. M.; Cho, Kang Rae; Sommerdijk, Nico A. J. M.
- Advanced Functional Materials, Vol. 27, Issue 40
Polysaccharide chemistry regulates kinetics of calcite nucleation through competition of interfacial energies
journal, May 2013
- Giuffre, Anthony J.; Hamm, Laura M.; Han, Nizhou
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 23
COSMO: a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient
journal, January 1993
- Klamt, A.; Schüürmann, G.
- J. Chem. Soc., Perkin Trans. 2, Issue 5
Uniform, Large-Area, Highly Ordered Peptoid Monolayer and Bilayer Films for Sensing Applications
journal, September 2019
- Murray, Daniel J.; Kim, Jae Hong; Grzincic, Elissa M.
- Langmuir, Vol. 35, Issue 42
Electronic structure calculations on workstation computers: The program system turbomole
journal, October 1989
- Ahlrichs, Reinhart; Bär, Michael; Häser, Marco
- Chemical Physics Letters, Vol. 162, Issue 3
Peptoid nanosheets as soluble, two-dimensional templates for calcium carbonate mineralization
journal, January 2015
- Jun, Joo Myung V.; Altoe, M. Virginia P.; Aloni, Shaul
- Chemical Communications, Vol. 51, Issue 50
COSMO-RS: An Alternative to Simulation for Calculating Thermodynamic Properties of Liquid Mixtures
journal, June 2010
- Klamt, Andreas; Eckert, Frank; Arlt, Wolfgang
- Annual Review of Chemical and Biomolecular Engineering, Vol. 1, Issue 1
Bioinspired Design and Assembly of Platelet Reinforced Polymer Films
journal, February 2008
- Bonderer, L. J.; Studart, A. R.; Gauckler, L. J.
- Science, Vol. 319, Issue 5866
Prediction of aliphatic and aromatic oil-water interfacial tension at temperatures >100 °C using COSMO-RS
journal, November 2018
- Andersson, M. P.; Eckert, F.; Reinisch, J.
- Fluid Phase Equilibria, Vol. 476
Anomalous versus Slowed-Down Brownian Diffusion in the Ligand-Binding Equilibrium
journal, November 2013
- Soula, Hédi; Caré, Bertrand; Beslon, Guillaume
- Biophysical Journal, Vol. 105, Issue 9
Predicting the p K a and Stability of Organic Acids and Bases at an Oil–Water Interface
journal, May 2014
- Andersson, M. P.; Olsson, M. H. M.; Stipp, S. L. S.
- Langmuir, Vol. 30, Issue 22
A CaCO 3 /nanocellulose-based bioinspired nacre-like material
journal, January 2017
- Farhadi-Khouzani, Masoud; Schütz, Christina; Durak, Grażyna M.
- Journal of Materials Chemistry A, Vol. 5, Issue 31
Peptoid nanosheets exhibit a new secondary-structure motif
journal, October 2015
- Mannige, Ranjan V.; Haxton, Thomas K.; Proulx, Caroline
- Nature, Vol. 526, Issue 7573
Antibody-Mimetic Peptoid Nanosheets for Molecular Recognition
journal, September 2013
- Olivier, Gloria K.; Cho, Andrew; Sanii, Babak
- ACS Nano, Vol. 7, Issue 10
Structural evolution, formation pathways and energetic controls during template-directed nucleation of CaCO3
journal, January 2012
- Nielsen, Michael H.; Lee, Jonathan R. I.; Hu, Qiaona
- Faraday Discussions, Vol. 159
Comparison of calibration methods for atomic-force microscopy cantilevers
journal, December 2002
- Burnham, N. A.; Chen, X.; Hodges, C. S.
- Nanotechnology, Vol. 14, Issue 1
Free-floating ultrathin two-dimensional crystals from sequence-specific peptoid polymers
journal, April 2010
- Nam, Ki Tae; Shelby, Sarah A.; Choi, Philip H.
- Nature Materials, Vol. 9, Issue 5
The solubilities of calcite, aragonite and vaterite in CO2-H2O solutions between 0 and 90°C, and an evaluation of the aqueous model for the system CaCO3-CO2-H2O
journal, June 1982
- Plummer, L. Niel; Busenberg, Eurybiades
- Geochimica et Cosmochimica Acta, Vol. 46, Issue 6
Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy
journal, January 2005
- Weigend, Florian; Ahlrichs, Reinhart
- Physical Chemistry Chemical Physics, Vol. 7, Issue 18, p. 3297-3305
Electrolyte crystal-aqueous solution interfacial tensions from crystallization data
journal, March 1982
- Söhnel, Otakar
- Journal of Crystal Growth, Vol. 57, Issue 1
Surface characterization and platelet adhesion studies for the mixed self-assembled monolayers with amine and carboxylic acid terminated functionalities
journal, September 2007
- Chuang, Wen-Hsi; Lin, Jui-Che
- Journal of Biomedical Materials Research Part A, Vol. 82A, Issue 4
Estimation of electrolyte-crystal-aqueous-solution interfacial tension
journal, September 1983
- Söhnel, Otakar
- Journal of Crystal Growth, Vol. 63, Issue 1
Peptoid Polymers: A Highly Designable Bioinspired Material
journal, May 2013
- Sun, Jing; Zuckermann, Ronald N.
- ACS Nano, Vol. 7, Issue 6
In situ Investigations of Carbonate Nucleation on Mineral and Organic Surfaces
journal, January 2013
- De Yoreo, J. J.; Waychunas, G. A.; Jun, Y. -S.
- Reviews in Mineralogy and Geochemistry, Vol. 77, Issue 1
Tuning calcite morphology and growth acceleration by a rational design of highly stable protein-mimetics
journal, September 2014
- Chen, Chun-Long; Qi, Jiahui; Tao, Jinhui
- Scientific Reports, Vol. 4, Issue 1
Interpreting the widespread nonlinear force spectra of intermolecular bonds
journal, August 2012
- Friddle, R. W.; Noy, A.; De Yoreo, J. J.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 34
Control and placement of molecules via self-assembly
journal, August 2001
- Lewis, P. A.; Donhauser, Z. J.; Mantooth, B. A.
- Nanotechnology, Vol. 12, Issue 3
Density-functional approximation for the correlation energy of the inhomogeneous electron gas
journal, June 1986
- Perdew, John P.
- Physical Review B, Vol. 33, Issue 12
Efficient method for the preparation of peptoids [oligo(N-substituted glycines)] by submonomer solid-phase synthesis
journal, December 1992
- Zuckermann, Ronald N.; Kerr, Janice M.; Kent, Stephen B. H.
- Journal of the American Chemical Society, Vol. 114, Issue 26
Shaken, Not Stirred: Collapsing a Peptoid Monolayer To Produce Free-Floating, Stable Nanosheets
journal, December 2011
- Sanii, Babak; Kudirka, Romas; Cho, Andrew
- Journal of the American Chemical Society, Vol. 133, Issue 51
Folding of a single-chain, information-rich polypeptoid sequence into a highly ordered nanosheet
journal, January 2011
- Kudirka, Romas; Tran, Helen; Sanii, Babak
- Biopolymers, Vol. 96, Issue 5
The thermodynamics of calcite nucleation at organic interfaces: Classical vs. non-classical pathways
journal, January 2012
- Hu, Q.; Nielsen, M. H.; Freeman, C. L.
- Faraday Discussions, Vol. 159
Oriented Growth of Calcite Controlled by Self-Assembled Monolayers of Functionalized Alkanethiols Supported on Gold and Silver
journal, May 1999
- Aizenberg, Joanna; Black, Andrew J.; Whitesides, George M.
- Journal of the American Chemical Society, Vol. 121, Issue 18
Thermodynamics of Epitaxial Calcite Nucleation on Self-Assembled Monolayers
journal, March 2005
- Travaille, A. Markus; Steijven, Erica G. A.; Meekes, H.
- The Journal of Physical Chemistry B, Vol. 109, Issue 12
A method for the determination of precipitation induction periods
journal, November 1978
- Söhnel, O.; Mullin, J. W.
- Journal of Crystal Growth, Vol. 44, Issue 4
Flat pearls from biofabrication of organized composites on inorganic substrates
journal, September 1994
- Fritz, Monika; Belcher, Angela M.; Radmacher, Manfred
- Nature, Vol. 371, Issue 6492
Bioinspired design and assembly of platelet reinforced polymer films with enhanced absorption properties
journal, January 2014
- Wei, Yun-Zhao; Wang, Guang-Sheng; Wu, Yun
- J. Mater. Chem. A, Vol. 2, Issue 15
Formation and Structure of Self-Assembled Monolayers
journal, January 1996
- Ulman, Abraham
- Chemical Reviews, Vol. 96, Issue 4, p. 1533-1554
Simulation of Organic Monolayers as Templates for the Nucleation of Calcite Crystals
journal, August 2004
- Duffy, Dorothy M.; Harding, John H.
- Langmuir, Vol. 20, Issue 18
The zero point of charge of calcite
journal, August 1967
- Somasundaran, P.; Agar, G. E.
- Journal of Colloid and Interface Science, Vol. 24, Issue 4
Bioinspired structural materials
journal, October 2014
- Wegst, Ulrike G. K.; Bai, Hao; Saiz, Eduardo
- Nature Materials, Vol. 14, Issue 1
Hierarchical structure and mechanical properties of nacre: a review
journal, January 2012
- Sun, Jiyu; Bhushan, Bharat
- RSC Advances, Vol. 2, Issue 20
Design strategies in mineralized biological materials
journal, January 1997
- Weiner, Stephen; Addadi, Lia
- Journal of Materials Chemistry, Vol. 7, Issue 5
Face-Selective Nucleation of Calcite on Self-Assembled Monolayers of Alkanethiols: Effect of the Parity of the Alkyl Chain
journal, August 2003
- Han, Yong-Jin; Aizenberg, Joanna
- Angewandte Chemie, Vol. 115, Issue 31