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Title: Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry

Abstract

The production of novel composite materials, assembled using biomimetic polymers known as peptoids (N-substituted glycines) to nucleate CaCO3, can open new pathways for advanced material design. However, a better understanding of the heterogeneous CaCO3 nucleation process is a necessary first step. We determined the thermodynamic and kinetic parameters for calcite nucleation on self-assembled monolayers (SAMs) of nanosheet-forming peptoid polymers and simpler, alkanethiol analogues. We used nucleation rate studies to determine the net interfacial free energy (γnet) for the peptoid-calcite interface and for SAMs terminated with carboxyl headgroups, amine headgroups, or a mix of the two. We compared the results with γnet determined from dynamic force spectroscopy (DFS) and from density functional theory (DFT), using COSMO-RS simulations. Calcite nucleation has a lower thermodynamic barrier on the peptoid surface than on carboxyl and amine SAMs. From the relationship between nucleation rate (J0) and saturation state, we found that under low-saturation conditions, i.e. <3.3 (pH 9.0), nucleation on the peptoid substrate was faster than that on all of the model surfaces, indicating a thermodynamic drive toward heterogeneous nucleation. When they are taken together, our results indicate that nanosheet-forming peptoid monolayers can serve as an organic template for CaCO3 polymorph growth.

Authors:
 [1]; ORCiD logo [1];  [2]; ORCiD logo [2]; ORCiD logo [1];  [1];  [3];  [1]; ORCiD logo [2]; ORCiD logo [3]
  1. Nano-Science Center, Department of Chemistry, University of Copenhagen, Copenhagen, Denmark
  2. Biological Nanostructures Facility, The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, California, United States
  3. Department of Geography & Earth Sciences, Aberystwyth University, Aberystwyth, United Kingdom
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES); European Research Council (ERC)
OSTI Identifier:
1698055
Alternate Identifier(s):
OSTI ID: 1760251
Grant/Contract Number:  
AC02-05CH11231; 3517; 663830
Resource Type:
Published Article
Journal Name:
Crystal Growth and Design
Additional Journal Information:
Journal Name: Crystal Growth and Design Journal Volume: 20 Journal Issue: 6; Journal ID: ISSN 1528-7483
Publisher:
American Chemical Society
Country of Publication:
France
Language:
English
Subject:
36 MATERIALS SCIENCE

Citation Formats

Nielsen, Anne R., Jelavić, Stanislav, Murray, Daniel, Rad, Behzad, Andersson, Martin P., Ceccato, Marcel, Mitchell, Andrew C., Stipp, Susan L. S., Zuckermann, Ronald N., and Sand, Karina K. Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry. France: N. p., 2020. Web. doi:10.1021/acs.cgd.0c00029.
Nielsen, Anne R., Jelavić, Stanislav, Murray, Daniel, Rad, Behzad, Andersson, Martin P., Ceccato, Marcel, Mitchell, Andrew C., Stipp, Susan L. S., Zuckermann, Ronald N., & Sand, Karina K. Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry. France. https://doi.org/10.1021/acs.cgd.0c00029
Nielsen, Anne R., Jelavić, Stanislav, Murray, Daniel, Rad, Behzad, Andersson, Martin P., Ceccato, Marcel, Mitchell, Andrew C., Stipp, Susan L. S., Zuckermann, Ronald N., and Sand, Karina K. Fri . "Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry". France. https://doi.org/10.1021/acs.cgd.0c00029.
@article{osti_1698055,
title = {Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry},
author = {Nielsen, Anne R. and Jelavić, Stanislav and Murray, Daniel and Rad, Behzad and Andersson, Martin P. and Ceccato, Marcel and Mitchell, Andrew C. and Stipp, Susan L. S. and Zuckermann, Ronald N. and Sand, Karina K.},
abstractNote = {The production of novel composite materials, assembled using biomimetic polymers known as peptoids (N-substituted glycines) to nucleate CaCO3, can open new pathways for advanced material design. However, a better understanding of the heterogeneous CaCO3 nucleation process is a necessary first step. We determined the thermodynamic and kinetic parameters for calcite nucleation on self-assembled monolayers (SAMs) of nanosheet-forming peptoid polymers and simpler, alkanethiol analogues. We used nucleation rate studies to determine the net interfacial free energy (γnet) for the peptoid-calcite interface and for SAMs terminated with carboxyl headgroups, amine headgroups, or a mix of the two. We compared the results with γnet determined from dynamic force spectroscopy (DFS) and from density functional theory (DFT), using COSMO-RS simulations. Calcite nucleation has a lower thermodynamic barrier on the peptoid surface than on carboxyl and amine SAMs. From the relationship between nucleation rate (J0) and saturation state, we found that under low-saturation conditions, i.e. <3.3 (pH 9.0), nucleation on the peptoid substrate was faster than that on all of the model surfaces, indicating a thermodynamic drive toward heterogeneous nucleation. When they are taken together, our results indicate that nanosheet-forming peptoid monolayers can serve as an organic template for CaCO3 polymorph growth.},
doi = {10.1021/acs.cgd.0c00029},
journal = {Crystal Growth and Design},
number = 6,
volume = 20,
place = {France},
year = {Fri Apr 24 00:00:00 EDT 2020},
month = {Fri Apr 24 00:00:00 EDT 2020}
}

Journal Article:
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https://doi.org/10.1021/acs.cgd.0c00029

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Works referenced in this record:

Polysaccharide Effects on Calcite Growth: The Influence of Composition and Branching
journal, September 2012

  • Nielsen, J. W.; Sand, K. K.; Pedersen, C. S.
  • Crystal Growth & Design, Vol. 12, Issue 10
  • DOI: 10.1021/cg300772h

Reconciling disparate views of template-directed nucleation through measurement of calcite nucleation kinetics and binding energies
journal, January 2014

  • Hamm, L. M.; Giuffre, A. J.; Han, N.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 4
  • DOI: 10.1073/pnas.1312369111

Precipitation of calcium carbonate
journal, December 1982


First-Principles Prediction of Liquid/Liquid Interfacial Tension
journal, June 2014

  • Andersson, M. P.; Bennetzen, M. V.; Klamt, A.
  • Journal of Chemical Theory and Computation, Vol. 10, Issue 8
  • DOI: 10.1021/ct500266z

Biomimetic layer-by-layer assembly of artificial nacre
journal, January 2012

  • Finnemore, Alexander; Cunha, Pedro; Shean, Tamaryn
  • Nature Communications, Vol. 3, Issue 1
  • DOI: 10.1038/ncomms1970

Assembly and molecular order of two-dimensional peptoid nanosheets through the oil–water interface
journal, September 2014

  • Robertson, Ellen J.; Olivier, Gloria K.; Qian, Menglu
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 37
  • DOI: 10.1073/pnas.1414843111

Calcium carbonate nucleation driven by ion binding in a biomimetic matrix revealed by in situ electron microscopy
journal, January 2015

  • Smeets, Paul J. M.; Cho, Kang Rae; Kempen, Ralph G. E.
  • Nature Materials, Vol. 14, Issue 4
  • DOI: 10.1038/nmat4193

A Mesocrystal-Like Morphology Formed by Classical Polymer-Mediated Crystal Growth
journal, September 2017

  • Smeets, Paul J. M.; Cho, Kang Rae; Sommerdijk, Nico A. J. M.
  • Advanced Functional Materials, Vol. 27, Issue 40
  • DOI: 10.1002/adfm.201701658

Polysaccharide chemistry regulates kinetics of calcite nucleation through competition of interfacial energies
journal, May 2013

  • Giuffre, Anthony J.; Hamm, Laura M.; Han, Nizhou
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 23
  • DOI: 10.1073/pnas.1222162110

COSMO: a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient
journal, January 1993


Uniform, Large-Area, Highly Ordered Peptoid Monolayer and Bilayer Films for Sensing Applications
journal, September 2019


Electronic structure calculations on workstation computers: The program system turbomole
journal, October 1989


Peptoid nanosheets as soluble, two-dimensional templates for calcium carbonate mineralization
journal, January 2015

  • Jun, Joo Myung V.; Altoe, M. Virginia P.; Aloni, Shaul
  • Chemical Communications, Vol. 51, Issue 50
  • DOI: 10.1039/C5CC03323C

COSMO-RS: An Alternative to Simulation for Calculating Thermodynamic Properties of Liquid Mixtures
journal, June 2010


Bioinspired Design and Assembly of Platelet Reinforced Polymer Films
journal, February 2008


Prediction of aliphatic and aromatic oil-water interfacial tension at temperatures >100 °C using COSMO-RS
journal, November 2018


Anomalous versus Slowed-Down Brownian Diffusion in the Ligand-Binding Equilibrium
journal, November 2013


Predicting the p K a and Stability of Organic Acids and Bases at an Oil–Water Interface
journal, May 2014

  • Andersson, M. P.; Olsson, M. H. M.; Stipp, S. L. S.
  • Langmuir, Vol. 30, Issue 22
  • DOI: 10.1021/la5008318

A CaCO 3 /nanocellulose-based bioinspired nacre-like material
journal, January 2017

  • Farhadi-Khouzani, Masoud; Schütz, Christina; Durak, Grażyna M.
  • Journal of Materials Chemistry A, Vol. 5, Issue 31
  • DOI: 10.1039/C6TA09524K

Peptoid nanosheets exhibit a new secondary-structure motif
journal, October 2015

  • Mannige, Ranjan V.; Haxton, Thomas K.; Proulx, Caroline
  • Nature, Vol. 526, Issue 7573
  • DOI: 10.1038/nature15363

Antibody-Mimetic Peptoid Nanosheets for Molecular Recognition
journal, September 2013

  • Olivier, Gloria K.; Cho, Andrew; Sanii, Babak
  • ACS Nano, Vol. 7, Issue 10
  • DOI: 10.1021/nn403899y

Structural evolution, formation pathways and energetic controls during template-directed nucleation of CaCO3
journal, January 2012

  • Nielsen, Michael H.; Lee, Jonathan R. I.; Hu, Qiaona
  • Faraday Discussions, Vol. 159
  • DOI: 10.1039/c2fd20050c

Comparison of calibration methods for atomic-force microscopy cantilevers
journal, December 2002


Free-floating ultrathin two-dimensional crystals from sequence-specific peptoid polymers
journal, April 2010

  • Nam, Ki Tae; Shelby, Sarah A.; Choi, Philip H.
  • Nature Materials, Vol. 9, Issue 5
  • DOI: 10.1038/nmat2742

Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy
journal, January 2005

  • Weigend, Florian; Ahlrichs, Reinhart
  • Physical Chemistry Chemical Physics, Vol. 7, Issue 18, p. 3297-3305
  • DOI: 10.1039/b508541a

Electrolyte crystal-aqueous solution interfacial tensions from crystallization data
journal, March 1982


Surface characterization and platelet adhesion studies for the mixed self-assembled monolayers with amine and carboxylic acid terminated functionalities
journal, September 2007

  • Chuang, Wen-Hsi; Lin, Jui-Che
  • Journal of Biomedical Materials Research Part A, Vol. 82A, Issue 4
  • DOI: 10.1002/jbm.a.31193

Estimation of electrolyte-crystal-aqueous-solution interfacial tension
journal, September 1983


Peptoid Polymers: A Highly Designable Bioinspired Material
journal, May 2013


In situ Investigations of Carbonate Nucleation on Mineral and Organic Surfaces
journal, January 2013

  • De Yoreo, J. J.; Waychunas, G. A.; Jun, Y. -S.
  • Reviews in Mineralogy and Geochemistry, Vol. 77, Issue 1
  • DOI: 10.2138/rmg.2013.77.7

Tuning calcite morphology and growth acceleration by a rational design of highly stable protein-mimetics
journal, September 2014

  • Chen, Chun-Long; Qi, Jiahui; Tao, Jinhui
  • Scientific Reports, Vol. 4, Issue 1
  • DOI: 10.1038/srep06266

Interpreting the widespread nonlinear force spectra of intermolecular bonds
journal, August 2012

  • Friddle, R. W.; Noy, A.; De Yoreo, J. J.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 34
  • DOI: 10.1073/pnas.1202946109

Control and placement of molecules via self-assembly
journal, August 2001


Density-functional approximation for the correlation energy of the inhomogeneous electron gas
journal, June 1986


Efficient method for the preparation of peptoids [oligo(N-substituted glycines)] by submonomer solid-phase synthesis
journal, December 1992

  • Zuckermann, Ronald N.; Kerr, Janice M.; Kent, Stephen B. H.
  • Journal of the American Chemical Society, Vol. 114, Issue 26
  • DOI: 10.1021/ja00052a076

Shaken, Not Stirred: Collapsing a Peptoid Monolayer To Produce Free-Floating, Stable Nanosheets
journal, December 2011

  • Sanii, Babak; Kudirka, Romas; Cho, Andrew
  • Journal of the American Chemical Society, Vol. 133, Issue 51
  • DOI: 10.1021/ja206199d

Folding of a single-chain, information-rich polypeptoid sequence into a highly ordered nanosheet
journal, January 2011

  • Kudirka, Romas; Tran, Helen; Sanii, Babak
  • Biopolymers, Vol. 96, Issue 5
  • DOI: 10.1002/bip.21590

The thermodynamics of calcite nucleation at organic interfaces: Classical vs. non-classical pathways
journal, January 2012

  • Hu, Q.; Nielsen, M. H.; Freeman, C. L.
  • Faraday Discussions, Vol. 159
  • DOI: 10.1039/c2fd20124k

Oriented Growth of Calcite Controlled by Self-Assembled Monolayers of Functionalized Alkanethiols Supported on Gold and Silver
journal, May 1999

  • Aizenberg, Joanna; Black, Andrew J.; Whitesides, George M.
  • Journal of the American Chemical Society, Vol. 121, Issue 18
  • DOI: 10.1021/ja984254k

Thermodynamics of Epitaxial Calcite Nucleation on Self-Assembled Monolayers
journal, March 2005

  • Travaille, A. Markus; Steijven, Erica G. A.; Meekes, H.
  • The Journal of Physical Chemistry B, Vol. 109, Issue 12
  • DOI: 10.1021/jp0446128

A method for the determination of precipitation induction periods
journal, November 1978


Flat pearls from biofabrication of organized composites on inorganic substrates
journal, September 1994

  • Fritz, Monika; Belcher, Angela M.; Radmacher, Manfred
  • Nature, Vol. 371, Issue 6492
  • DOI: 10.1038/371049a0

Bioinspired design and assembly of platelet reinforced polymer films with enhanced absorption properties
journal, January 2014

  • Wei, Yun-Zhao; Wang, Guang-Sheng; Wu, Yun
  • J. Mater. Chem. A, Vol. 2, Issue 15
  • DOI: 10.1039/C4TA00010B

Formation and Structure of Self-Assembled Monolayers
journal, January 1996

  • Ulman, Abraham
  • Chemical Reviews, Vol. 96, Issue 4, p. 1533-1554
  • DOI: 10.1021/cr9502357

Simulation of Organic Monolayers as Templates for the Nucleation of Calcite Crystals
journal, August 2004

  • Duffy, Dorothy M.; Harding, John H.
  • Langmuir, Vol. 20, Issue 18
  • DOI: 10.1021/la049552b

The zero point of charge of calcite
journal, August 1967


Bioinspired structural materials
journal, October 2014

  • Wegst, Ulrike G. K.; Bai, Hao; Saiz, Eduardo
  • Nature Materials, Vol. 14, Issue 1
  • DOI: 10.1038/nmat4089

Hierarchical structure and mechanical properties of nacre: a review
journal, January 2012


Design strategies in mineralized biological materials
journal, January 1997

  • Weiner, Stephen; Addadi, Lia
  • Journal of Materials Chemistry, Vol. 7, Issue 5
  • DOI: 10.1039/a604512j

Face-Selective Nucleation of Calcite on Self-Assembled Monolayers of Alkanethiols: Effect of the Parity of the Alkyl Chain
journal, August 2003