Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells
Abstract
Botulinum neurotoxin serotype E (BoNT/E) is one of the major causes of human botulism, which is a life-threatening disease caused by flaccid paralysis of muscles. After receptor-mediated toxin internalization into motor neurons, the translocation domain (HN) of BoNT/E transforms into a protein channel upon vesicle acidification in endosomes and delivers its protease domain (LC) across membrane to enter the neuronal cytosol. It is believed that the rapid onset of BoNT/E intoxication compared to other BoNT serotypes is related to its swift internalization and translocation. We recently identified two neutralizing single-domain camelid antibodies (VHHs) against BoNT/E1 termed JLE-E5 and JLE-E9. Here, we report the crystal structures of these two VHHs bound to the LCHN domain of BoNT/E1. The structures reveal that these VHHs recognize two distinct epitopes that are partially overlapping with the putative transmembrane regions on HN, and therefore could physically block membrane association of BoNT/E1. This is confirmed by our in vitro studies, which show that these VHHs inhibit the structural change of BoNT/E1 at acidic pH and interfere with BoNT/E1 association with lipid vesicles. Therefore, these two VHHs neutralize BoNT/E1 by preventing the transmembrane delivery of LC. Furthermore, structure-based sequence analyses show that the 3-dimensional epitopes of thesemore »
- Authors:
-
- Univ. of California, Irvine, CA (United States)
- Cornell Univ., Ithaca, NY (United States); Argonne National Lab. (ANL), Argonne, IL (United States)
- Tufts Univ., North Grafton, MA (United States)
- Publication Date:
- Research Org.:
- Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
- Sponsoring Org.:
- USDOE; National Institutes of Health (NIH); National Institute of Allergy and Infections Diseases (NIAID)
- OSTI Identifier:
- 1673777
- Grant/Contract Number:
- R01AI139087; R21AI139690; R21AI123920; R01AI125704; P30 GM124165; S10OD021527; AC02-06CH11357
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Toxins
- Additional Journal Information:
- Journal Volume: 12; Journal Issue: 10; Journal ID: ISSN 2072-6651
- Publisher:
- MDPI
- Country of Publication:
- United States
- Language:
- ENGLISH
- Subject:
- 60 APPLIED LIFE SCIENCES; botulinum neurotoxin; botulism; single-domain antibody; VHH; neutralizing epitope; antitoxin; membrane translocation
Citation Formats
Lam, Kwok-Ho, Perry, Kay, Shoemaker, Charles B., and Jin, Rongsheng. Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells. United States: N. p., 2020.
Web. doi:10.3390/toxins12100616.
Lam, Kwok-Ho, Perry, Kay, Shoemaker, Charles B., & Jin, Rongsheng. Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells. United States. https://doi.org/10.3390/toxins12100616
Lam, Kwok-Ho, Perry, Kay, Shoemaker, Charles B., and Jin, Rongsheng. Sun .
"Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells". United States. https://doi.org/10.3390/toxins12100616. https://www.osti.gov/servlets/purl/1673777.
@article{osti_1673777,
title = {Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells},
author = {Lam, Kwok-Ho and Perry, Kay and Shoemaker, Charles B. and Jin, Rongsheng},
abstractNote = {Botulinum neurotoxin serotype E (BoNT/E) is one of the major causes of human botulism, which is a life-threatening disease caused by flaccid paralysis of muscles. After receptor-mediated toxin internalization into motor neurons, the translocation domain (HN) of BoNT/E transforms into a protein channel upon vesicle acidification in endosomes and delivers its protease domain (LC) across membrane to enter the neuronal cytosol. It is believed that the rapid onset of BoNT/E intoxication compared to other BoNT serotypes is related to its swift internalization and translocation. We recently identified two neutralizing single-domain camelid antibodies (VHHs) against BoNT/E1 termed JLE-E5 and JLE-E9. Here, we report the crystal structures of these two VHHs bound to the LCHN domain of BoNT/E1. The structures reveal that these VHHs recognize two distinct epitopes that are partially overlapping with the putative transmembrane regions on HN, and therefore could physically block membrane association of BoNT/E1. This is confirmed by our in vitro studies, which show that these VHHs inhibit the structural change of BoNT/E1 at acidic pH and interfere with BoNT/E1 association with lipid vesicles. Therefore, these two VHHs neutralize BoNT/E1 by preventing the transmembrane delivery of LC. Furthermore, structure-based sequence analyses show that the 3-dimensional epitopes of these two VHHs are largely conserved across many BoNT/E subtypes, suggesting a broad-spectrum protection against the BoNT/E family. In summary, this work improves our understanding of the membrane translocation mechanism of BoNT/E and paves the way for developing VHHs as diagnostics or therapeutics for the treatment of BoNT/E intoxication.},
doi = {10.3390/toxins12100616},
journal = {Toxins},
number = 10,
volume = 12,
place = {United States},
year = {Sun Sep 27 00:00:00 EDT 2020},
month = {Sun Sep 27 00:00:00 EDT 2020}
}
Works referenced in this record:
Camelid Single-Domain Antibodies: Historical Perspective and Future Outlook
journal, November 2017
- Arbabi-Ghahroudi, Mehdi
- Frontiers in Immunology, Vol. 8
Overview of the CCP 4 suite and current developments
journal, March 2011
- Winn, Martyn D.; Ballard, Charles C.; Cowtan, Kevin D.
- Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4
Formation of ion channels in lipid bilayers by a peptide with the predicted transmembrane sequence of botulinum neurotoxin A
journal, August 1995
- Oblatt-Montal, Myrta; Yamazaki, Masahito; Nelson, Richard
- Protein Science, Vol. 4, Issue 8
Identification and characterization of a novel botulinum neurotoxin
journal, August 2017
- Zhang, Sicai; Masuyer, Geoffrey; Zhang, Jie
- Nature Communications, Vol. 8, Issue 1
Diverse binding modes, same goal: The receptor recognition mechanism of botulinum neurotoxin
journal, March 2015
- Lam, Kwok-Ho; Yao, Guorui; Jin, Rongsheng
- Progress in Biophysics and Molecular Biology, Vol. 117, Issue 2-3
A Single-Domain Llama Antibody Potently Inhibits the Enzymatic Activity of Botulinum Neurotoxin by Binding to the Non-Catalytic α-Exosite Binding Region
journal, April 2010
- Dong, Jianbo; Thompson, Aaron A.; Fan, Yongfeng
- Journal of Molecular Biology, Vol. 397, Issue 4
Domain Organization in Clostridium botulinum Neurotoxin Type E Is Unique: Its Implication in Faster Translocation
journal, February 2009
- Kumaran, Desigan; Eswaramoorthy, Subramaniam; Furey, William
- Journal of Molecular Biology, Vol. 386, Issue 1
Botulinum Neurotoxin Heavy Chain Belt as an Intramolecular Chaperone for the Light Chain
journal, January 2007
- Brunger, Axel T.; Breidenbach, Mark A.; Jin, Rongsheng
- PLoS Pathogens, Vol. 3, Issue 9
Botulinum Neurotoxins B and E Translocate at Different Rates and Exhibit Divergent Responses to GT1b and Low pH
journal, July 2012
- Sun, Shihu; Tepp, William H.; Johnson, Eric A.
- Biochemistry, Vol. 51, Issue 28
Neutralisation of specific surface carboxylates speeds up translocation of botulinum neurotoxin type B enzymatic domain
journal, October 2013
- Pirazzini, Marco; Henke, Tina; Rossetto, Ornella
- FEBS Letters, Vol. 587, Issue 23
Camelid nanobodies: killing two birds with one stone
journal, June 2015
- Desmyter, Aline; Spinelli, Silvia; Roussel, Alain
- Current Opinion in Structural Biology, Vol. 32
Novel Chimeras of Botulinum Neurotoxins A and E Unveil Contributions from the Binding, Translocation, and Protease Domains to Their Functional Characteristics
journal, April 2008
- Wang, Jiafu; Meng, Jianghui; Lawrence, Gary W.
- Journal of Biological Chemistry, Vol. 283, Issue 25
First Case of Type E Wound Botulism Diagnosed Using Real-Time PCR
journal, September 2007
- Artin, I.; Bjorkman, P.; Cronqvist, J.
- Journal of Clinical Microbiology, Vol. 45, Issue 11
Molecular evolution of antibody cross-reactivity for two subtypes of type A botulinum neurotoxin
journal, December 2006
- Garcia-Rodriguez, Consuelo; Levy, Raphael; Arndt, Joseph W.
- Nature Biotechnology, Vol. 25, Issue 1
Targeting botulinum neurotoxin persistence by the ubiquitin-proteasome system
journal, September 2010
- Tsai, Y. C.; Maditz, R.; Kuo, C. -l.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 38
Single molecule detection of intermediates during botulinum neurotoxin translocation across membranes
journal, June 2007
- Fischer, A.; Montal, M.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 25
Historical Perspectives and Guidelines for Botulinum Neurotoxin Subtype Nomenclature
journal, January 2017
- Peck, Michael; Smith, Theresa; Anniballi, Fabrizio
- Toxins, Vol. 9, Issue 1
The Therapeutic Potential of Nanobodies
journal, November 2019
- Jovčevska, Ivana; Muyldermans, Serge
- BioDrugs, Vol. 34, Issue 1
Botulinum neurotoxins: genetic, structural and mechanistic insights
journal, June 2014
- Rossetto, Ornella; Pirazzini, Marco; Montecucco, Cesare
- Nature Reviews Microbiology, Vol. 12, Issue 8
Tables of Toxicity of Botulinum and Tetanus Neurotoxins
journal, November 2019
- Rossetto, Ornella; Montecucco, Cesare
- Toxins, Vol. 11, Issue 12
Variations in the Botulinum Neurotoxin Binding Domain and the Potential for Novel Therapeutics
journal, October 2018
- Davies, Jonathan; Liu, Sai; Acharya, K.
- Toxins, Vol. 10, Issue 10
Inference of Macromolecular Assemblies from Crystalline State
journal, September 2007
- Krissinel, Evgeny; Henrick, Kim
- Journal of Molecular Biology, Vol. 372, Issue 3
XDS
journal, January 2010
- Kabsch, Wolfgang
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2
Molecular Architecture of Botulinum Neurotoxin E Revealed by Single Particle Electron Microscopy
journal, November 2007
- Fischer, Audrey; Garcia-Rodriguez, Consuelo; Geren, Isin
- Journal of Biological Chemistry, Vol. 283, Issue 7
Crystal Structures of Botulinum Neurotoxin DC in Complex with Its Protein Receptors Synaptotagmin I and II
journal, September 2013
- Berntsson, Ronnie Per-Arne; Peng, Lisheng; Svensson, Linda Marie
- Structure, Vol. 21, Issue 9
Structural Insights into Rational Design of Single-Domain Antibody-Based Antitoxins against Botulinum Neurotoxins
journal, February 2020
- Lam, Kwok-ho; Tremblay, Jacqueline M.; Vazquez-Cintron, Edwin
- Cell Reports, Vol. 30, Issue 8
A Three Monoclonal Antibody Combination Potently Neutralizes Multiple Botulinum Neurotoxin Serotype E Subtypes
journal, March 2018
- Garcia-Rodriguez, Consuelo; Razai, Ali; Geren, Isin
- Toxins, Vol. 10, Issue 3
Nanobodies and Nanobody-Based Human Heavy Chain Antibodies As Antitumor Therapeutics
journal, November 2017
- Bannas, Peter; Hambach, Julia; Koch-Nolte, Friedrich
- Frontiers in Immunology, Vol. 8
A camelid single-domain antibody neutralizes botulinum neurotoxin A by blocking host receptor binding
journal, August 2017
- Yao, Guorui; Lam, Kwok-ho; Weisemann, Jasmin
- Scientific Reports, Vol. 7, Issue 1
Crystal structure of botulinum neurotoxin type A and implications for toxicity
journal, October 1998
- Lacy, D. Borden; Tepp, William; Cohen, Alona C.
- Nature Structural Biology, Vol. 5, Issue 10
Structural predictions of the channel-forming region of botulinum neurotoxin heavy chain
journal, April 1995
- Lebeda, Frank J.; Olson, Mark A.
- Toxicon, Vol. 33, Issue 4
Structure and function of a unique pore-forming protein from a pathogenic acanthamoeba
journal, November 2012
- Michalek, Matthias; Sönnichsen, Frank D.; Wechselberger, Rainer
- Nature Chemical Biology, Vol. 9, Issue 1
Molecular Characterization of a Novel Botulinum Neurotoxin Type H Gene
journal, October 2013
- Dover, Nir; Barash, Jason R.; Hill, Karen K.
- The Journal of Infectious Diseases, Vol. 209, Issue 2
Comparison of the pH-induced conformational change of different clostridial neurotoxins
journal, June 2004
- Puhar, A.; Johnson, E. A.; Rossetto, O.
- Biochemical and Biophysical Research Communications, Vol. 319, Issue 1
MolProbity : all-atom structure validation for macromolecular crystallography
journal, December 2009
- Chen, Vincent B.; Arendall, W. Bryan; Headd, Jeffrey J.
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 1
Features and development of Coot
journal, March 2010
- Emsley, P.; Lohkamp, B.; Scott, W. G.
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4
Structure of dual receptor binding to botulinum neurotoxin B
journal, June 2013
- Berntsson, Ronnie P-A.; Peng, Lisheng; Dong, Min
- Nature Communications, Vol. 4, Issue 1
Translocation of botulinum neurotoxin light chain protease through the heavy chain channel
journal, December 2002
- Koriazova, Lilia K.; Montal, Mauricio
- Nature Structural Biology, Vol. 10, Issue 1
On Botulinum Neurotoxin Variability
journal, January 2015
- Montecucco, Cesare; Rasotto, Maria Berica
- mBio, Vol. 6, Issue 1
Botulinum and Tetanus Neurotoxins
journal, June 2019
- Dong, Min; Masuyer, Geoffrey; Stenmark, Pål
- Annual Review of Biochemistry, Vol. 88, Issue 1
The Novel Clostridial Neurotoxin Produced by Strain IBCA10-7060 Is Immunologically Equivalent to BoNT/HA
journal, December 2019
- Fan, Yongfeng; Barash, Jason R.; Conrad, Fraser
- Toxins, Vol. 12, Issue 1
Single domain antibodies: promising experimental and therapeutic tools in infection and immunity
journal, June 2009
- Wesolowski, Janusz; Alzogaray, Vanina; Reyelt, Jan
- Medical Microbiology and Immunology, Vol. 198, Issue 3
PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010
- Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221
An Atypical Outbreak of Food-Borne Botulism Due to Clostridium botulinum Types B and E from Ham
journal, November 2014
- Mazuet, Christelle; Sautereau, Jean; Legeay, Christine
- Journal of Clinical Microbiology, Vol. 53, Issue 2
Crystal Structure of Botulinum Neurotoxin Type A in Complex with the Cell Surface Co-Receptor GT1b—Insight into the Toxin–Neuron Interaction
journal, August 2008
- Stenmark, Pål; Dupuy, Jérôme; Imamura, Akihiro
- PLoS Pathogens, Vol. 4, Issue 8
On the translocation of botulinum and tetanus neurotoxins across the membrane of acidic intracellular compartments
journal, March 2016
- Pirazzini, Marco; Tehran, Domenico Azarnia; Leka, Oneda
- Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1858, Issue 3
Botulinum Toxin as a Biological Weapon: Medical and Public Health Management
journal, February 2001
- Arnon, Stephen S.; Schechter, Robert; Inglesby, Thomas V.
- JAMA, Vol. 285, Issue 8
Bioinformatic discovery of a toxin family in Chryseobacterium piperi with sequence similarity to botulinum neurotoxins
journal, February 2019
- Mansfield, Michael James; Wentz, Travis Gwynn; Zhang, Sicai
- Scientific Reports, Vol. 9, Issue 1
Studies of the Mechanistic Details of the pH-dependent Association of Botulinum Neurotoxin with Membranes
journal, June 2011
- Mushrush, Darren J.; Koteiche, Hanane A.; Sammons, Morgan A.
- Journal of Biological Chemistry, Vol. 286, Issue 30
Botulinum Neurotoxin Devoid of Receptor Binding Domain Translocates Active Protease
journal, December 2008
- Fischer, Audrey; Mushrush, Darren J.; Lacy, D. Borden
- PLoS Pathogens, Vol. 4, Issue 12
Two Cases of Type E Infant Botulism Caused by Neurotoxigenic Clostridium butyricum in Italy
journal, August 1986
- Aureli, P.; Fenicia, L.; Pasolini, B.
- Journal of Infectious Diseases, Vol. 154, Issue 2
N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A
journal, June 2016
- Yao, Guorui; Zhang, Sicai; Mahrhold, Stefan
- Nature Structural & Molecular Biology, Vol. 23, Issue 7
A viral-fusion-peptide-like molecular switch drives membrane insertion of botulinum neurotoxin A1
journal, December 2018
- Lam, Kwok-ho; Guo, Zhuojun; Krez, Nadja
- Nature Communications, Vol. 9, Issue 1
Structural Analysis of Botulinum Neurotoxin Type E Catalytic Domain and Its Mutant Glu212→Gln Reveals the Pivotal Role of the Glu212 Carboxylate in the Catalytic Pathway † , ‡
journal, June 2004
- Agarwal, Rakhi; Eswaramoorthy, Subramaniam; Kumaran, Desigan
- Biochemistry, Vol. 43, Issue 21
Free R value: a novel statistical quantity for assessing the accuracy of crystal structures
journal, January 1992
- Brünger, Axel T.
- Nature, Vol. 355, Issue 6359
Camelid VHH Antibodies that Neutralize Botulinum Neurotoxin Serotype E Intoxication or Protease Function
journal, September 2020
- Tremblay, Jacqueline M.; Vazquez-Cintron, Edwin; Lam, Kwok-Ho
- Toxins, Vol. 12, Issue 10
Experimentally determined hydrophobicity scale for proteins at membrane interfaces
journal, October 1996
- Wimley, William C.; White, Stephen H.
- Nature Structural & Molecular Biology, Vol. 3, Issue 10
The Expanding Therapeutic Utility of Botulinum Neurotoxins
journal, May 2018
- Fonfria, Elena; Maignel, Jacquie; Lezmi, Stephane
- Toxins, Vol. 10, Issue 5
Mode of VAMP substrate recognition and inhibition of Clostridium botulinum neurotoxin F
journal, June 2009
- Agarwal, Rakhi; Schmidt, James J.; Stafford, Robert G.
- Nature Structural & Molecular Biology, Vol. 16, Issue 7
Beltless Translocation Domain of Botulinum Neurotoxin A Embodies a Minimum Ion-conductive Channel
journal, December 2011
- Fischer, Audrey; Sambashivan, Shilpa; Brunger, Axel T.
- Journal of Biological Chemistry, Vol. 287, Issue 3
Neutralizing human monoclonal antibodies binding multiple serotypes of botulinum neurotoxin
journal, December 2010
- Garcia-Rodriguez, C.; Geren, I. N.; Lou, J.
- Protein Engineering Design and Selection, Vol. 24, Issue 3
Botulinum neurotoxin B recognizes its protein receptor with high affinity and specificity
journal, December 2006
- Jin, Rongsheng; Rummel, Andreas; Binz, Thomas
- Nature, Vol. 444, Issue 7122
Phaser crystallographic software
journal, July 2007
- McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
- Journal of Applied Crystallography, Vol. 40, Issue 4
Substrate recognition strategy for botulinum neurotoxin serotype A
journal, December 2004
- Breidenbach, Mark A.; Brunger, Axel T.
- Nature, Vol. 432, Issue 7019