On Simulating the Formation of Structured, Crystalline Systems via Non-classical Pathways
Abstract
Observations in crystal growth and assembly from recent in situ methods suggest alternative, non-classical crystallization pathways play an important role in the determination of the micro- and meso- structures in crystalline systems. These processes display parallels that cross-cut multiple disciplines investigating crystallization across four orders of magnitude in size scales and widely differing environments, hinting that alternative crystal growth pathways may be a fundamental scheme in natural crystal formation. Using a system of short-range attractive microbeads, we demonstrate that the addition of a small concentration of sub-species incommensurate with the lattice spacing of the dominant species results in a stark change in crystal size and morphology. These changes are attributed to the presence of fleeting, amorphous-like configurations of beads that ultimately change the melting and growth dynamics in preferred directions. From these real-time observations, we hypothesize the amorphous mineral precursors present in biological mineralized tissues undergo similar non-classical crystallization processes resulting in the complex structures found in biomineralization.
- Authors:
-
- BitWrex, LLC, Morton, IL (United States)
- Univ. of California, San Francisco, CA (United States). Dept. of Bioengineering and Therapeutic Sciences; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Molecular Foundry
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES); National Science Foundation (NSF)
- OSTI Identifier:
- 1635187
- Grant/Contract Number:
- AC02-05CH11231; 1507607; 0654193
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Materials
- Additional Journal Information:
- Journal Volume: 7; Journal ID: ISSN 2296-8016
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 36 MATERIALS SCIENCE; non-classical crystallization pathways; biological mineralization; multiscale interactions; bead-bead interactions; amorphous precursors; colloidal crystallization
Citation Formats
Mergo III, John C., and Seto, Jong. On Simulating the Formation of Structured, Crystalline Systems via Non-classical Pathways. United States: N. p., 2020.
Web. doi:10.3389/fmats.2020.00075.
Mergo III, John C., & Seto, Jong. On Simulating the Formation of Structured, Crystalline Systems via Non-classical Pathways. United States. https://doi.org/10.3389/fmats.2020.00075
Mergo III, John C., and Seto, Jong. Wed .
"On Simulating the Formation of Structured, Crystalline Systems via Non-classical Pathways". United States. https://doi.org/10.3389/fmats.2020.00075. https://www.osti.gov/servlets/purl/1635187.
@article{osti_1635187,
title = {On Simulating the Formation of Structured, Crystalline Systems via Non-classical Pathways},
author = {Mergo III, John C. and Seto, Jong},
abstractNote = {Observations in crystal growth and assembly from recent in situ methods suggest alternative, non-classical crystallization pathways play an important role in the determination of the micro- and meso- structures in crystalline systems. These processes display parallels that cross-cut multiple disciplines investigating crystallization across four orders of magnitude in size scales and widely differing environments, hinting that alternative crystal growth pathways may be a fundamental scheme in natural crystal formation. Using a system of short-range attractive microbeads, we demonstrate that the addition of a small concentration of sub-species incommensurate with the lattice spacing of the dominant species results in a stark change in crystal size and morphology. These changes are attributed to the presence of fleeting, amorphous-like configurations of beads that ultimately change the melting and growth dynamics in preferred directions. From these real-time observations, we hypothesize the amorphous mineral precursors present in biological mineralized tissues undergo similar non-classical crystallization processes resulting in the complex structures found in biomineralization.},
doi = {10.3389/fmats.2020.00075},
journal = {Frontiers in Materials},
number = ,
volume = 7,
place = {United States},
year = {Wed Apr 08 00:00:00 EDT 2020},
month = {Wed Apr 08 00:00:00 EDT 2020}
}
Web of Science
Figures / Tables:
Works referenced in this record:
Prediction of absolute crystal-nucleation rate in hard-sphere colloids
journal, February 2001
- Auer, Stefan; Frenkel, Daan
- Nature, Vol. 409, Issue 6823
Direction-Specific Interactions Control Crystal Growth by Oriented Attachment
journal, May 2012
- Li, D.; Nielsen, M. H.; Lee, J. R. I.
- Science, Vol. 336, Issue 6084
Aggregation-Based Crystal Growth and Microstructure Development in Natural Iron Oxyhydroxide Biomineralization Products
journal, August 2000
- Banfield, J. F.
- Science, Vol. 289, Issue 5480
Observing crystal nucleation in four dimensions using atomic electron tomography
journal, June 2019
- Zhou, Jihan; Yang, Yongsoo; Yang, Yao
- Nature, Vol. 570, Issue 7762
Multiscale Toughening Mechanisms in Biological Materials and Bioinspired Designs
journal, July 2019
- Huang, Wei; Restrepo, David; Jung, Jae‐Young
- Advanced Materials, Vol. 31, Issue 43
Entropy-driven crystal formation on highly strained substrates
journal, May 2013
- Savage, John R.; Hopp, Stefan F.; Ganapathy, Rajesh
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 23
Thermodynamics of Calcite Growth: Baseline for Understanding Biomineral Formation
journal, October 1998
- Teng, H. H.
- Science, Vol. 282, Issue 5389
Crystallization Pathways in Biomineralization
journal, August 2011
- Weiner, Steve; Addadi, Lia
- Annual Review of Materials Research, Vol. 41, Issue 1
Control of Polymorph Selection in Amorphous Calcium Carbonate Crystallization by Poly(Aspartic Acid): Two Different Mechanisms
journal, April 2017
- Zou, Zhaoyong; Bertinetti, Luca; Politi, Yael
- Small, Vol. 13, Issue 21
Density of Nanometrically Thin Amorphous Films Varies by Thickness
journal, May 2017
- Etinger-Geller, Yael; Katsman, Alex; Pokroy, Boaz
- Chemistry of Materials, Vol. 29, Issue 11
Crystal nucleation of hard spheres using molecular dynamics, umbrella sampling, and forward flux sampling: A comparison of simulation techniques
journal, December 2010
- Filion, L.; Hermes, M.; Ni, R.
- The Journal of Chemical Physics, Vol. 133, Issue 24
Sea Urchin Spine Calcite Forms via a Transient Amorphous Calcium Carbonate Phase
journal, November 2004
- Politi, Y.
- Science, Vol. 306, Issue 5699
On Mineral Retrosynthesis of a Complex Biogenic Scaffold
journal, March 2017
- Rao, Ashit; Arias, José; Cölfen, Helmut
- Inorganics, Vol. 5, Issue 1
Direct measurement of the free energy by optical microscopy
journal, January 2006
- Dullens, R. P. A.; Aarts, D. G. A. L.; Kegel, W. K.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 3
Building two-dimensional materials one row at a time: Avoiding the nucleation barrier
journal, December 2018
- Chen, Jiajun; Zhu, Enbo; Liu, Juan
- Science, Vol. 362, Issue 6419
Mesocrystals and Nonclassical Crystallization
book, January 2008
- Clfen, Helmut; Antonietti, Markus
- John Wiley & Sons, Ltd
Crystallization by particle attachment in synthetic, biogenic, and geologic environments
journal, July 2015
- De Yoreo, J. J.; Gilbert, P. U. P. A.; Sommerdijk, N. A. J. M.
- Science, Vol. 349, Issue 6247
Shaping Magnetite with Poly- l -arginine and pH: From Small Single Crystals to Large Mesocrystals
journal, August 2019
- Kuhrts, Lucas; Macías-Sánchez, Elena; Tarakina, Nadezda V.
- The Journal of Physical Chemistry Letters, Vol. 10, Issue 18
In situ TEM imaging of CaCO3 nucleation reveals coexistence of direct and indirect pathways
journal, September 2014
- Nielsen, M. H.; Aloni, S.; De Yoreo, J. J.
- Science, Vol. 345, Issue 6201
Experimental Evidence for Two-Step Nucleation in Colloidal Crystallization
journal, May 2009
- Savage, J. R.; Dinsmore, A. D.
- Physical Review Letters, Vol. 102, Issue 19
Artificial coiled coil biomineralisation protein for the synthesis of magnetic nanoparticles
journal, June 2019
- Rawlings, Andrea E.; Somner, Lori A.; Fitzpatrick-Milton, Michaela
- Nature Communications, Vol. 10, Issue 1
Calcium carbonate nucleation driven by ion binding in a biomimetic matrix revealed by in situ electron microscopy
journal, January 2015
- Smeets, Paul J. M.; Cho, Kang Rae; Kempen, Ralph G. E.
- Nature Materials, Vol. 14, Issue 4
The Stomatopod Dactyl Club: A Formidable Damage-Tolerant Biological Hammer
journal, June 2012
- Weaver, J. C.; Milliron, G. W.; Miserez, A.
- Science, Vol. 336, Issue 6086
From Ostwald Ripening to Single Chirality
journal, November 2009
- Noorduin, Wim L.; Vlieg, Elias; Kellogg, Richard M.
- Angewandte Chemie International Edition, Vol. 48, Issue 51
Biomineralization-Inspired Material Design for Bone Regeneration
journal, September 2018
- de Melo Pereira, Daniel; Habibovic, Pamela
- Advanced Healthcare Materials, Vol. 7, Issue 22
Crack driving force in twisted plywood structures
journal, June 2017
- Fischer, F. D.; Kolednik, O.; Predan, J.
- Acta Biomaterialia, Vol. 55
Stable prenucleation mineral clusters are liquid-like ionic polymers
journal, September 2011
- Demichelis, Raffaella; Raiteri, Paolo; Gale, Julian D.
- Nature Communications, Vol. 2, Issue 1
Rationally Designed Complex, Hierarchical Microarchitectures
journal, May 2013
- Noorduin, W. L.; Grinthal, A.; Mahadevan, L.
- Science, Vol. 340, Issue 6134
Methods of Digital Video Microscopy for Colloidal Studies
journal, April 1996
- Crocker, John C.; Grier, David G.
- Journal of Colloid and Interface Science, Vol. 179, Issue 1
Hierarchical Calcite Crystals with Occlusions of a Simple Polyelectrolyte Mimic Complex Biomineral Structures
journal, July 2012
- Schenk, Anna S.; Zlotnikov, Igor; Pokroy, Boaz
- Advanced Functional Materials, Vol. 22, Issue 22
Impact of the colloidal state on the oriented attachment growth mechanism
journal, January 2010
- Dalmaschio, Cleocir José; Ribeiro, Caue; Leite, Edson Roberto
- Nanoscale, Vol. 2, Issue 11
Three-dimensional oriented attachment growth of single-crystal pre-perovskite PbTiO 3 hollowed fibers
journal, January 2018
- Zhao, Ruoyu; Li, Ming; Ren, Zhaohui
- CrystEngComm, Vol. 20, Issue 4
On Interaction between Two Bodies Immersed in a Solution of Macromolecules
journal, July 1954
- Asakura, Sho; Oosawa, Fumio
- The Journal of Chemical Physics, Vol. 22, Issue 7
Role of clusters in nonclassical nucleation and growth of protein crystals
journal, January 2014
- Sleutel, Mike; Van Driessche, Alexander E. S.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 5
Self-catalyzed growth of S layers via an amorphous-to-crystalline transition limited by folding kinetics
journal, September 2010
- Chung, S.; Shin, S. -H.; Bertozzi, C. R.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 38
Ion-association complexes unite classical and non-classical theories for the biomimetic nucleation of calcium phosphate
journal, February 2013
- Habraken, Wouter J. E. M.; Tao, Jinhui; Brylka, Laura J.
- Nature Communications, Vol. 4, Issue 1
Melting of Metastable Crystallites in Charge-Stabilized Colloidal Suspensions
journal, May 1996
- Larsen, Amy E.; Grier, David G.
- Physical Review Letters, Vol. 76, Issue 20
Biomimetic mineralization of collagen via an enzyme-aided PILP process
journal, April 2010
- Jee, Sang Soo; Culver, Lauren; Li, Yuping
- Journal of Crystal Growth, Vol. 312, Issue 8
Mollusc larval shell formation: amorphous calcium carbonate is a precursor phase for aragonite
journal, August 2002
- Weiss, Ingrid Maria; Tuross, Noreen; Addadi, Lia
- Journal of Experimental Zoology, Vol. 293, Issue 5
Formation and transformation of a short range ordered iron carbonate precursor
journal, September 2015
- Dideriksen, Knud; Frandsen, Cathrine; Bovet, Nicolas
- Geochimica et Cosmochimica Acta, Vol. 164
Tough, Bio-Inspired Hybrid Materials
journal, December 2008
- Munch, E.; Launey, M. E.; Alsem, D. H.
- Science, Vol. 322, Issue 5907
Nucleation and growth of magnetite from solution
journal, February 2013
- Baumgartner, Jens; Dey, Archan; Bomans, Paul H. H.
- Nature Materials, Vol. 12, Issue 4
Three-dimensional structure of human lamellar bone: The presence of two different materials and new insights into the hierarchical organization
journal, February 2014
- Reznikov, Natalie; Shahar, Ron; Weiner, Steve
- Bone, Vol. 59
Structural Biological Materials: Critical Mechanics-Materials Connections
journal, February 2013
- Meyers, M. A.; McKittrick, J.; Chen, P. -Y.
- Science, Vol. 339, Issue 6121
Principles of Crystal Nucleation and Growth
journal, January 2003
- De Yoreo, J. J.
- Reviews in Mineralogy and Geochemistry, Vol. 54, Issue 1
The role of prenucleation clusters in surface-induced calcium phosphate crystallization
journal, November 2010
- Dey, Archan; Bomans, Paul H. H.; Müller, Frank A.
- Nature Materials, Vol. 9, Issue 12
Mesocrystalline calcium silicate hydrate: A bioinspired route toward elastic concrete materials
journal, November 2017
- Picker, Andreas; Nicoleau, Luc; Burghard, Zaklina
- Science Advances, Vol. 3, Issue 11
The energetic basis for hydroxyapatite mineralization by amelogenin variants provides insights into the origin of amelogenesis imperfecta
journal, June 2019
- Tao, Jinhui; Shin, Yongsoon; Jayasinha, Rajith
- Proceedings of the National Academy of Sciences, Vol. 116, Issue 28
The localization of occluded matrix proteins in calcareous spicules of sea urchin larvae
journal, October 2004
- Seto, Jong; Zhang, Yang; Hamilton, Patricia
- Journal of Structural Biology, Vol. 148, Issue 1
Secrets of the Sea Urchin Spicule Revealed: Protein Cooperativity Is Responsible for ACC Transformation, Intracrystalline Incorporation, and Guided Mineral Particle Assembly in Biocomposite Material Formation
journal, September 2018
- Pendola, Martin; Jain, Gaurav; Huang, Yu-Chieh
- ACS Omega, Vol. 3, Issue 9
Imaging the Sublimation Dynamics of Colloidal Crystallites
journal, November 2006
- Savage, J. R.; Blair, D. W.; Levine, A. J.
- Science, Vol. 314, Issue 5800
Formation of Aragonitic Layered Structures from Kaolinite and Amorphous Calcium Carbonate Precursors
journal, December 2012
- Seto, Jong; Azaı̈s, Thierry; Cölfen, Helmut
- Langmuir, Vol. 29, Issue 24
Influence of metal coordination and light irradiation on hierarchical self-assembly processes
journal, January 2019
- Kartha, Kalathil K.; Allampally, Naveen Kumar; Politi, Antiope T.
- Chemical Science, Vol. 10, Issue 3
Ostwald’s Rule of Stages and Its Role in CdSe Quantum Dot Crystallization
journal, October 2012
- Washington, Aaron L.; Foley, Megan E.; Cheong, Soshan
- Journal of the American Chemical Society, Vol. 134, Issue 41
Tuning crystallization pathways through sequence engineering of biomimetic polymers
journal, April 2017
- Ma, Xiang; Zhang, Shuai; Jiao, Fang
- Nature Materials, Vol. 16, Issue 7
The two-step mechanism of nucleation of crystals in solution
journal, January 2010
- Vekilov, Peter G.
- Nanoscale, Vol. 2, Issue 11
The predominant role of collagen in the nucleation, growth, structure and orientation of bone apatite
journal, July 2012
- Wang, Yan; Azaïs, Thierry; Robin, Marc
- Nature Materials, Vol. 11, Issue 8
Stable Prenucleation Calcium Carbonate Clusters
journal, December 2008
- Gebauer, Denis; Völkel, Antje; Cölfen, Helmut
- Science, Vol. 322, Issue 5909
Nacre Protein Sequence Compartmentalizes Mineral Polymorphs in Solution
journal, March 2014
- Seto, Jong; Picker, Andreas; Chen, Yong
- Crystal Growth & Design, Vol. 14, Issue 4
Amorphous calcium carbonate particles form coral skeletons
journal, August 2017
- Mass, Tali; Giuffre, Anthony J.; Sun, Chang-Yu
- Proceedings of the National Academy of Sciences, Vol. 114, Issue 37
Nucleation precursors in protein crystallization
journal, February 2014
- Vekilov, Peter G.; Vorontsova, Maria A.
- Acta Crystallographica Section F Structural Biology Communications, Vol. 70, Issue 3
Fluid-solid transitions on walls in binary hard-sphere mixtures
journal, November 1997
- Dinsmore, A. D.; Warren, P. B.; Poon, W. C. K.
- Europhysics Letters (EPL), Vol. 40, Issue 3
Nature’s hierarchical materials
journal, November 2007
- Fratzl, Peter; Weinkamer, Richard
- Progress in Materials Science, Vol. 52, Issue 8
Do protein crystals nucleate within dense liquid clusters?
journal, June 2015
- Maes, Dominique; Vorontsova, Maria A.; Potenza, Marco A. C.
- Acta Crystallographica Section F Structural Biology Communications, Vol. 71, Issue 7
Crystallization in Patterns: A Bio-Inspired Approach
journal, August 2004
- Aizenberg, J.
- Advanced Materials, Vol. 16, Issue 15
Direct observation of mineral–organic composite formation reveals occlusion mechanism
journal, January 2016
- Rae Cho, Kang; Kim, Yi-Yeoun; Yang, Pengcheng
- Nature Communications, Vol. 7, Issue 1
Biological Composites
journal, June 2010
- Dunlop, John W. C.; Fratzl, Peter
- Annual Review of Materials Research, Vol. 40, Issue 1
Crystallization kinetics of colloidal model suspensions: recent achievements and new perspectives
journal, July 2014
- Palberg, Thomas
- Journal of Physics: Condensed Matter, Vol. 26, Issue 33
Flat pearls from biofabrication of organized composites on inorganic substrates
journal, September 1994
- Fritz, Monika; Belcher, Angela M.; Radmacher, Manfred
- Nature, Vol. 371, Issue 6492
Understanding the Formation Mechanism of Magnetic Mesocrystals with (Cryo-)Electron Microscopy
journal, August 2019
- Mirabello, Giulia; Keizer, Arthur; Bomans, Paul H. H.
- Chemistry of Materials, Vol. 31, Issue 18
Structure-property relationships of a biological mesocrystal in the adult sea urchin spine
journal, February 2012
- Seto, J.; Ma, Y.; Davis, S. A.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 10
Mechanism of Calcite Co-Orientation in the Sea Urchin Tooth
journal, December 2009
- Killian, Christopher E.; Metzler, Rebecca A.; Gong, Y. U. T.
- Journal of the American Chemical Society, Vol. 131, Issue 51
Mapping amorphous calcium phosphate transformation into crystalline mineral from the cell to the bone in zebrafish fin rays
journal, March 2010
- Mahamid, J.; Aichmayer, B.; Shimoni, E.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 14
Selective nucleation in porous media
journal, January 2013
- Hedges, Lester O.; Whitelam, Stephen
- Soft Matter, Vol. 9, Issue 41
Multiphase transformation and Ostwald’s rule of stages during crystallization of a metal phosphate
journal, November 2008
- Chung, Sung-Yoon; Kim, Young-Min; Kim, Jin-Gyu
- Nature Physics, Vol. 5, Issue 1
Phase transitions in biogenic amorphous calcium carbonate
journal, April 2012
- Gong, Y. U. T.; Killian, C. E.; Olson, I. C.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 16
Size limits of self-assembled colloidal structures made using specific interactions
journal, October 2014
- Zeravcic, Zorana; Manoharan, Vinothan N.; Brenner, Michael P.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 45
Direct Measurements of Island Growth and Step-Edge Barriers in Colloidal Epitaxy
journal, January 2010
- Ganapathy, R.; Buckley, M. R.; Gerbode, S. J.
- Science, Vol. 327, Issue 5964
Figures / Tables found in this record: