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Title: The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

Journal Article · · Nucleic Acids Research
DOI: https://doi.org/10.1093/nar/gkz943 · OSTI ID:1633068
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  1. Univ. of Chicago, IL (United States); Argonne National Lab. (ANL), Argonne, IL (United States)
  2. Univ. of Virginia, Charlottesville, VA (United States); Argonne National Lab. (ANL), Argonne, IL (United States)
  3. Cairo Univ., Cairo (Egypt)
  4. Argonne National Lab. (ANL), Argonne, IL (United States)
  5. Fellowship for Interpretation of Genomes, Burr Ridge, IL (United States)
  6. Univ. of Virginia, Charlottesville, VA (United States)
  7. Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States)
  8. Fellowship for Interpretation of Genomes, Burr Ridge, IL (United States)
  9. Chicago State Univ., IL (United States)
  10. Univ. of Illinois at Urbana-Champaign, IL (United States)
  11. Univ. of Chicago, IL (United States)
  12. University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
+ Show Author Affiliations

The PathoSystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious Diseases (https://www.patricbrc.org). PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated and publicly available genomes with curated metadata. PATRIC offers web-based visualization and comparative analysis tools, a private workspace in which users can analyze their own data in the context of the public collections, services that streamline complex bioinformatic workflows and command-line tools for bulk data analysis. Over the past several years, as genomic and other omics-related experiments have become more cost-effective and widespread, we have observed considerable growth in the usage of and demand for easy-to-use, publicly available bioinformatic tools and services. Here we report the recent updates to the PATRIC resource, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze data.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
National Institutes of Health (NIH) - National Institute of Allergy and Infectious Diseases (NIAID); U. S. Department of Health and Human Services; USDOE
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1633068
Journal Information:
Nucleic Acids Research, Journal Name: Nucleic Acids Research Journal Issue: D1 Vol. 48; ISSN 0305-1048
Publisher:
Oxford University PressCopyright Statement
Country of Publication:
United States
Language:
English

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The 27th annual Nucleic Acids Research database issue and molecular biology database collection journal December 2019

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