Structure of an allosteric modulator bound to the CB1 cannabinoid receptor
Abstract
The CB1 receptor mediates the central nervous system response to cannabinoids, and is a drug target for pain, anxiety and seizures. CB1 also responds to allosteric modulators, which influence cannabinoid binding and efficacy. To understand the mechanism of these compounds, we solved the crystal structure of CB1 with the negative allosteric modulator (NAM) ORG27569 and the agonist CP55940. The structure reveals that the NAM binds to an extrahelical site within the inner leaflet of the membrane, which overlaps with a conserved site of cholesterol interaction in many G protein-coupled receptors (GPCRs). The ternary structure with ORG27569 and CP55940 captures an intermediate state of the receptor, in which aromatic residues at the base of the agonist-binding pocket adopt an inactive conformation despite the large contraction of the orthosteric pocket. The structure illustrates a potential strategy for drug modulation of CB1 and other class A GPCRs.
- Authors:
-
- Sichuan Univ., Chengdu (China)
- Univ. of Texas Southwestern Medical Center, Dallas, TX (United States)
- Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
- Publication Date:
- Research Org.:
- Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
- Sponsoring Org.:
- Welch Foundation; Edward Mallinckrodt, Jr. Foundation; National Young Thousand Talents Program of China; USDOE Office of Science (SC)
- OSTI Identifier:
- 1631989
- Grant/Contract Number:
- AC02-06CH11357; I-1770
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Nature Chemical Biology
- Additional Journal Information:
- Journal Volume: 15; Journal Issue: 12; Journal ID: ISSN 1552-4450
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; GPCR; Structural biology; G protein-coupled receptors; Pharmacology; X-ray crystallography
Citation Formats
Shao, Zhenhua, Yan, Wei, Chapman, Karen, Ramesh, Karthik, Ferrell, Aaron J., Yin, Jie, Wang, Xuehui, Xu, Qingping, and Rosenbaum, Daniel M. Structure of an allosteric modulator bound to the CB1 cannabinoid receptor. United States: N. p., 2019.
Web. doi:10.1038/s41589-019-0387-2.
Shao, Zhenhua, Yan, Wei, Chapman, Karen, Ramesh, Karthik, Ferrell, Aaron J., Yin, Jie, Wang, Xuehui, Xu, Qingping, & Rosenbaum, Daniel M. Structure of an allosteric modulator bound to the CB1 cannabinoid receptor. United States. https://doi.org/10.1038/s41589-019-0387-2
Shao, Zhenhua, Yan, Wei, Chapman, Karen, Ramesh, Karthik, Ferrell, Aaron J., Yin, Jie, Wang, Xuehui, Xu, Qingping, and Rosenbaum, Daniel M. Mon .
"Structure of an allosteric modulator bound to the CB1 cannabinoid receptor". United States. https://doi.org/10.1038/s41589-019-0387-2. https://www.osti.gov/servlets/purl/1631989.
@article{osti_1631989,
title = {Structure of an allosteric modulator bound to the CB1 cannabinoid receptor},
author = {Shao, Zhenhua and Yan, Wei and Chapman, Karen and Ramesh, Karthik and Ferrell, Aaron J. and Yin, Jie and Wang, Xuehui and Xu, Qingping and Rosenbaum, Daniel M.},
abstractNote = {The CB1 receptor mediates the central nervous system response to cannabinoids, and is a drug target for pain, anxiety and seizures. CB1 also responds to allosteric modulators, which influence cannabinoid binding and efficacy. To understand the mechanism of these compounds, we solved the crystal structure of CB1 with the negative allosteric modulator (NAM) ORG27569 and the agonist CP55940. The structure reveals that the NAM binds to an extrahelical site within the inner leaflet of the membrane, which overlaps with a conserved site of cholesterol interaction in many G protein-coupled receptors (GPCRs). The ternary structure with ORG27569 and CP55940 captures an intermediate state of the receptor, in which aromatic residues at the base of the agonist-binding pocket adopt an inactive conformation despite the large contraction of the orthosteric pocket. The structure illustrates a potential strategy for drug modulation of CB1 and other class A GPCRs.},
doi = {10.1038/s41589-019-0387-2},
journal = {Nature Chemical Biology},
number = 12,
volume = 15,
place = {United States},
year = {Mon Oct 28 00:00:00 EDT 2019},
month = {Mon Oct 28 00:00:00 EDT 2019}
}
Web of Science
Works referenced in this record:
Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser
journal, July 2015
- Kang, Yanyong; Zhou, X. Edward; Gao, Xiang
- Nature, Vol. 523, Issue 7562
High-resolution crystal structure of the human CB1 cannabinoid receptor
journal, November 2016
- Shao, Zhenhua; Yin, Jie; Chapman, Karen
- Nature, Vol. 540, Issue 7634
Conformationally restrained analogs of pravadoline: nanomolar potent, enantioselective, (aminoalkyl)indole agonists of the cannabinoid receptor
journal, January 1992
- D'Ambra, Thomas E.; Estep, Kimberly G.; Bell, Malcolm R.
- Journal of Medicinal Chemistry, Vol. 35, Issue 1
Structural basis for the cooperative allosteric activation of the free fatty acid receptor GPR40
journal, June 2017
- Lu, Jun; Byrne, Noel; Wang, John
- Nature Structural & Molecular Biology, Vol. 24, Issue 7
Crystal Structure of an Archaeal Glycogen Synthase: INSIGHTS INTO OLIGOMERIZATION AND SUBSTRATE BINDING OF EUKARYOTIC GLYCOGEN SYNTHASES
journal, November 2005
- Horcajada, Cristina; Guinovart, Joan J.; Fita, Ignacio
- Journal of Biological Chemistry, Vol. 281, Issue 5
A Key Agonist-induced Conformational Change in the Cannabinoid Receptor CB1 Is Blocked by the Allosteric Ligand Org 27569
journal, July 2012
- Fay, Jonathan F.; Farrens, David L.
- Journal of Biological Chemistry, Vol. 287, Issue 40
PSNCBAM-1, a novel allosteric antagonist at cannabinoid CB1 receptors with hypophagic effects in rats: PSNCBAM-1, a CB1 allosteric antagonist
journal, November 2007
- Horswill, J. G.; Bali, U.; Shaaban, S.
- British Journal of Pharmacology, Vol. 152, Issue 5
Hepatic CB1 receptor is required for development of diet-induced steatosis, dyslipidemia, and insulin and leptin resistance in mice
journal, September 2008
- Osei-Hyiaman, Douglas; Liu, Jie; Zhou, Liang
- Journal of Clinical Investigation, Vol. 118, Issue 9
Structure of a Signaling Cannabinoid Receptor 1-G Protein Complex
journal, January 2019
- Krishna Kumar, Kaavya; Shalev-Benami, Moran; Robertson, Michael J.
- Cell, Vol. 176, Issue 3
GPCR Engineering Yields High-Resolution Structural Insights into 2-Adrenergic Receptor Function
journal, October 2007
- Rosenbaum, D. M.; Cherezov, V.; Hanson, M. A.
- Science, Vol. 318, Issue 5854
Structural insights into the subtype-selective antagonist binding to the M2 muscarinic receptor
journal, November 2018
- Suno, Ryoji; Lee, Sangbae; Maeda, Shoji
- Nature Chemical Biology, Vol. 14, Issue 12
Cannabidiol displays unexpectedly high potency as an antagonist of CB1 and CB2 receptor agonists in vitro: Cannabinoid antagonism by cannabidiol
journal, March 2007
- Thomas, A.; Baillie, G. L.; Phillips, A. M.
- British Journal of Pharmacology, Vol. 150, Issue 5
CB 1 Receptor Allosteric Modulators Display Both Agonist and Signaling Pathway Specificity
journal, November 2012
- Baillie, Gemma L.; Horswill, James G.; Anavi-Goffer, Sharon
- Molecular Pharmacology, Vol. 83, Issue 2
Cannabidiol for neurodegenerative disorders: important new clinical applications for this phytocannabinoid?: Cannabidiol and neurodegenerative disorders
journal, January 2013
- Fernández-Ruiz, Javier; Sagredo, Onintza; Pazos, M. Ruth
- British Journal of Clinical Pharmacology, Vol. 75, Issue 2
Selective and Potent Analgetics Derived from Cannabinoids
journal, August 1981
- Johnson, M. R.; Melvin, L. S.; Althuis, T. H.
- The Journal of Clinical Pharmacology, Vol. 21, Issue S1
Mechanism of intracellular allosteric β2AR antagonist revealed by X-ray crystal structure
journal, August 2017
- Liu, Xiangyu; Ahn, Seungkirl; Kahsai, Alem W.
- Nature, Vol. 548, Issue 7668
Crystal structures of agonist-bound human cannabinoid receptor CB1
journal, July 2017
- Hua, Tian; Vemuri, Kiran; Nikas, Spyros P.
- Nature, Vol. 547, Issue 7664
PRODRG : a tool for high-throughput crystallography of protein–ligand complexes
journal, July 2004
- Schüttelkopf, Alexander W.; van Aalten, Daan M. F.
- Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 8
Structural dynamics and energetics underlying allosteric inactivation of the cannabinoid receptor CB 1
journal, June 2015
- Fay, Jonathan F.; Farrens, David L.
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 27
Activation and allosteric modulation of a muscarinic acetylcholine receptor
journal, November 2013
- Kruse, Andrew C.; Ring, Aaron M.; Manglik, Aashish
- Nature, Vol. 504, Issue 7478
Trial of Cannabidiol for Drug-Resistant Seizures in the Dravet Syndrome
journal, May 2017
- Devinsky, Orrin; Cross, J. Helen; Laux, Linda
- New England Journal of Medicine, Vol. 376, Issue 21
Endogenous vs Exogenous Allosteric Modulators in GPCRs: A dispute for shuttling CB1 among different membrane microenvironments
journal, October 2015
- Stornaiuolo, Mariano; Bruno, Agostino; Botta, Lorenzo
- Scientific Reports, Vol. 5, Issue 1
Integrity of extracellular loop 1 of the human cannabinoid receptor 1 is critical for high-affinity binding of the ligand CP 55,940 but not SR 141716A
journal, May 2003
- Murphy, James W.; Kendall, Debra A.
- Biochemical Pharmacology, Vol. 65, Issue 10
Crystal Structure of the Human Cannabinoid Receptor CB1
journal, October 2016
- Hua, Tian; Vemuri, Kiran; Pu, Mengchen
- Cell, Vol. 167, Issue 3
MolProbity : all-atom structure validation for macromolecular crystallography
journal, December 2009
- Chen, Vincent B.; Arendall, W. Bryan; Headd, Jeffrey J.
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 1
Allosteric Modulation of the Cannabinoid CB 1 Receptor
journal, August 2005
- Price, Martin R.; Baillie, Gemma L.; Thomas, Adèle
- Molecular Pharmacology, Vol. 68, Issue 5
Features and development of Coot
journal, March 2010
- Emsley, P.; Lohkamp, B.; Scott, W. G.
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4
The Endocannabinoid System and the Brain
journal, January 2013
- Mechoulam, Raphael; Parker, Linda A.
- Annual Review of Psychology, Vol. 64, Issue 1
Allosteric Modulation of a Cannabinoid G Protein-coupled Receptor: BINDING SITE ELUCIDATION AND RELATIONSHIP TO G PROTEIN SIGNALING
journal, December 2013
- Shore, Derek M.; Baillie, Gemma L.; Hurst, Dow H.
- Journal of Biological Chemistry, Vol. 289, Issue 9
Dual Role of the Second Extracellular Loop of the Cannabinoid Receptor 1: Ligand Binding and Receptor Localization
journal, July 2009
- Ahn, Kwang H.; Bertalovitz, Alexander C.; Mierke, Dale F.
- Molecular Pharmacology, Vol. 76, Issue 4
Distinct Roles of β-Arrestin 1 and β-Arrestin 2 in ORG27569-induced Biased Signaling and Internalization of the Cannabinoid Receptor 1 (CB1)
journal, February 2013
- Ahn, Kwang H.; Mahmoud, Mariam M.; Shim, Joong-Youn
- Journal of Biological Chemistry, Vol. 288, Issue 14
Orthosteric and allosteric action of the C5a receptor antagonists
journal, June 2018
- Liu, Heng; Kim, Hee Ryung; Deepak, R. N. V. Krishna
- Nature Structural & Molecular Biology, Vol. 25, Issue 6
Lipid Rafts Control Signaling of Type-1 Cannabinoid Receptors in Neuronal Cells: IMPLICATIONS FOR ANANDAMIDE-INDUCED APOPTOSIS
journal, January 2005
- Bari, Monica; Battista, Natalia; Fezza, Filomena
- Journal of Biological Chemistry, Vol. 280, Issue 13
PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010
- Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221
CB 1 Allosteric Modulator Org27569 Is an Antagonist/Inverse Agonist of ERK1/2 Signaling
journal, December 2016
- Gamage, Thomas F.; Anderson, Johnathon C.; Abood, Mary E.
- Cannabis and Cannabinoid Research, Vol. 1, Issue 1
Pregnenolone Can Protect the Brain from Cannabis Intoxication
journal, January 2014
- Vallée, Monique; Vitiello, Sergio; Bellocchio, Luigi
- Science, Vol. 343, Issue 6166
Should peripheral CB1 cannabinoid receptors be selectively targeted for therapeutic gain?
journal, January 2009
- Kunos, George; Osei-Hyiaman, Douglas; Bátkai, Sándor
- Trends in Pharmacological Sciences, Vol. 30, Issue 1
Structural insights into G-protein-coupled receptor allostery
journal, July 2018
- Thal, David M.; Glukhova, Alisa; Sexton, Patrick M.
- Nature, Vol. 559, Issue 7712
Identification of Essential Cannabinoid-binding Domains: STRUCTURAL INSIGHTS INTO EARLY DYNAMIC EVENTS IN RECEPTOR ACTIVATION
journal, July 2011
- Shim, Joong-Youn; Bertalovitz, Alexander C.; Kendall, Debra A.
- Journal of Biological Chemistry, Vol. 286, Issue 38
Novel Electrophilic and Photoaffinity Covalent Probes for Mapping the Cannabinoid 1 Receptor Allosteric Site(s)
journal, November 2015
- Kulkarni, Pushkar M.; Kulkarni, Abhijit R.; Korde, Anisha
- Journal of Medicinal Chemistry, Vol. 59, Issue 1
Cannabinoid receptor localization in brain.
journal, March 1990
- Herkenham, M.; Lynn, A. B.; Little, M. D.
- Proceedings of the National Academy of Sciences, Vol. 87, Issue 5
Cannabinoids for Medical Use: A Systematic Review and Meta-analysis
journal, June 2015
- Whiting, Penny F.; Wolff, Robert F.; Deshpande, Sohan
- JAMA, Vol. 313, Issue 24
Crystal Structure of a Lipid G Protein-Coupled Receptor
journal, February 2012
- Hanson, M. A.; Roth, C. B.; Jo, E.
- Science, Vol. 335, Issue 6070
New approaches and challenges to targeting the endocannabinoid system
journal, August 2018
- Di Marzo, Vincenzo
- Nature Reviews Drug Discovery, Vol. 17, Issue 9
Modulation of CB1 cannabinoid receptor by allosteric ligands: Pharmacology and therapeutic opportunities
journal, September 2017
- Khurana, Leepakshi; Mackie, Ken; Piomelli, Daniele
- Neuropharmacology, Vol. 124
Manipulation of Subunit Stoichiometry in Heteromeric Membrane Proteins
journal, May 2016
- Morales-Perez, Claudio L.; Noviello, Colleen M.; Hibbs, Ryan E.
- Structure, Vol. 24, Issue 5
Structure of CC chemokine receptor 2 with orthosteric and allosteric antagonists
journal, December 2016
- Zheng, Yi; Qin, Ling; Zacarías, Natalia V. Ortiz
- Nature, Vol. 540, Issue 7633
[20] Processing of X-ray diffraction data collected in oscillation mode
book, January 1997
- Otwinowski, Zbyszek; Minor, Wladek
- Macromolecular Crystallography Part A, 307-326
Phaser crystallographic software
journal, July 2007
- McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
- Journal of Applied Crystallography, Vol. 40, Issue 4
Activation of the cannabinoid CB1 receptor may involve a W6.48/F3.36 rotamer toggle switch
journal, December 2002
- Singh, R.; Hurst, D. P.; Barnett-Norris, J.
- Journal of Peptide Research, Vol. 60, Issue 6
A ternary complex model explains the agonist-specific binding properties of the adenylate cyclase-coupled beta-adrenergic receptor.
journal, August 1980
- De Lean, A.; Stadel, J. M.; Lefkowitz, R. J.
- Journal of Biological Chemistry, Vol. 255, Issue 15
Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen
journal, August 2020
- Zacarias, Sónia; Temporão, Adriana; Carpentier, Philippe
- JBIC Journal of Biological Inorganic Chemistry, Vol. 25, Issue 6
PARP1 exhibits enhanced association and catalytic efficiency with γH2A.X-nucleosome
journal, December 2019
- Sharma, Deepti; De Falco, Louis; Padavattan, Sivaraman
- Nature Communications, Vol. 10, Issue 1
Cavin1 intrinsically disordered domains are essential for fuzzy electrostatic interactions and caveola formation
journal, February 2021
- Tillu, Vikas A.; Rae, James; Gao, Ya
- Nature Communications, Vol. 12, Issue 1
Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance
journal, January 2021
- Svetlov, Maxim S.; Syroegin, Egor A.; Aleksandrova, Elena V.
- Nature Chemical Biology, Vol. 17, Issue 4
PHENIX: a comprehensive Python-based system for macromolecular structure solution.
text, January 2010
- Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
- Apollo - University of Cambridge Repository
Works referencing / citing this record:
Common activation mechanism of class A GPCRs
journal, December 2019
- Zhou, Qingtong; Yang, Dehua; Wu, Meng
- eLife, Vol. 8
Microglial Phenotypes and Their Relationship to the Cannabinoid System: Therapeutic Implications for Parkinson’s Disease
journal, January 2020
- Kelly, Rachel; Joers, Valerie; Tansey, Malú G.
- Molecules, Vol. 25, Issue 3
Common activation mechanism of class A GPCRs.
journalarticle, January 2019
- Zhou, Qingtong; Yang, Dehua; Wu, Meng
- eLife Sciences Publications, Ltd