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Title: Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139T)

Abstract

Bacteroides coprosuis Whitehead et al. 2005 belongs to the genus Bacteroides, which is a member of the family Bacteroidaceae. Members of the genus Bacteroides in general are known as beneficial protectors of animal guts against pathogenic microorganisms, and as contributors to the degradation of complex molecules such as polysaccharides. B. coprosuis itself was isolated from a manure storage pit of a swine facility, but has not yet been found in an animal host. The species is of interest solely because of its isolated phylogenetic location. The genome of B. coprosuis is already the 5(th) sequenced type strain genome from the genus Bacteroides. The 2,991,798 bp long genome with its 2,461 protein-coding and 78 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Authors:
 [1];  [2];  [3];  [3];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [2];  [5];  [2];  [6] more »;  [6];  [1];  [3];  [7];  [3];  [2];  [4];  [4];  [8];  [6];  [9];  [4];  [3];  [4] « less
+ Show Author Affiliations
  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  2. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  3. German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig (Germany)
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States; Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  6. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  7. Helmholtz Centre for Infection Research, Braunschweig (Germany)
  8. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
  9. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of Queensland, Brisbane, QLD (Australia)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); German Research Foundation (DFG)
OSTI Identifier:
1630564
Grant/Contract Number:  
AC02-05CH11231; AC52-07NA27344; AC02-06NA25396; AC05-00OR22725; INST 599/1-2
Resource Type:
Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 4; Journal Issue: 2; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; strictly anaerobic; non-motile; Gram-negative; mesophilic; chemoorganotrophic; Bacteroidaceae; GEBA

Citation Formats

Land, Miriam, Held, Brittany, Gronow, Sabine, Abt, Birte, Lucas, Susan, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Hauser, Loren, Brambilla, Evelyne-Marie, Rohde, Manfred, Göker, Markus, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, and Lapidus, Alla. Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139T). United States: N. p., 2011. Web. doi:10.4056/sigs.1784330.
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Land, Miriam, Held, Brittany, Gronow, Sabine, Abt, Birte, Lucas, Susan, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Hauser, Loren, Brambilla, Evelyne-Marie, Rohde, Manfred, Göker, Markus, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, & Lapidus, Alla. Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139T). United States. https://doi.org/10.4056/sigs.1784330
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Land, Miriam, Held, Brittany, Gronow, Sabine, Abt, Birte, Lucas, Susan, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Hauser, Loren, Brambilla, Evelyne-Marie, Rohde, Manfred, Göker, Markus, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, and Lapidus, Alla. Fri . "Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139T)". United States. https://doi.org/10.4056/sigs.1784330. https://www.osti.gov/servlets/purl/1630564.
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@article{osti_1630564,
title = {Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139T)},
author = {Land, Miriam and Held, Brittany and Gronow, Sabine and Abt, Birte and Lucas, Susan and Del Rio, Tijana Glavina and Nolan, Matt and Tice, Hope and Cheng, Jan-Fang and Pitluck, Sam and Liolios, Konstantinos and Pagani, Ioanna and Ivanova, Natalia and Mavromatis, Konstantinos and Mikhailova, Natalia and Pati, Amrita and Tapia, Roxane and Han, Cliff and Goodwin, Lynne and Chen, Amy and Palaniappan, Krishna and Hauser, Loren and Brambilla, Evelyne-Marie and Rohde, Manfred and Göker, Markus and Detter, John C. and Woyke, Tanja and Bristow, James and Eisen, Jonathan A. and Markowitz, Victor and Hugenholtz, Philip and Kyrpides, Nikos C. and Klenk, Hans-Peter and Lapidus, Alla},
abstractNote = {Bacteroides coprosuis Whitehead et al. 2005 belongs to the genus Bacteroides, which is a member of the family Bacteroidaceae. Members of the genus Bacteroides in general are known as beneficial protectors of animal guts against pathogenic microorganisms, and as contributors to the degradation of complex molecules such as polysaccharides. B. coprosuis itself was isolated from a manure storage pit of a swine facility, but has not yet been found in an animal host. The species is of interest solely because of its isolated phylogenetic location. The genome of B. coprosuis is already the 5(th) sequenced type strain genome from the genus Bacteroides. The 2,991,798 bp long genome with its 2,461 protein-coding and 78 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.},
doi = {10.4056/sigs.1784330},
journal = {Standards in Genomic Sciences},
number = 2,
volume = 4,
place = {United States},
year = {Fri Apr 29 00:00:00 EDT 2011},
month = {Fri Apr 29 00:00:00 EDT 2011}
}
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Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.4056/sigs.1784330
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Cited by: 4 works
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Figures / Tables:

Figure 1 Figure 1: Phylogenetic tree highlighting the position of B. coprosuis relative to the other type strains within the genus Bacteroides. The tree was inferred from 1,412 aligned characters of the 16S rRNA gene sequence under the maximum likelihood criterion and rooted in accordance with the current taxonomy. The branches aremore » scaled in terms of the expected number of substitutions per site. Numbers to the right of bifurcations are support values from 1,000 bootstrap replicates if larger than 60%. Lineages with type strain genome sequencing projects registered in GOLD and unpublished are marked with one asterisk, those listed as published (as well as the target genome) with two asterisks, and CP002122/3 for Prevotella melaninogenica.« less
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    Works referencing / citing this record:

    Genome-Based Taxonomic Classification of Bacteroidetes
    journal, December 2016

    • Hahnke, Richard L.; Meier-Kolthoff, Jan P.; García-López, Marina
    • Frontiers in Microbiology, Vol. 7
    • DOI: 10.3389/fmicb.2016.02003

    Changes of Microbial Diversity During Swine Manure Treatment Process
    journal, March 2018

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