The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem
Abstract
The Yellowstone geothermal complex contains over 10,000 diverse geothermal features that host numerous phylogenetically deeply rooted and poorly understood archaea, bacteria, and viruses. Microbial communities in high-temperature environments are generally less diverse than soil, marine, sediment, or lake habitats and therefore offer a tremendous opportunity for studying the structure and function of different model microbial communities using environmental metagenomics. One of the broader goals of this study was to establish linkages among microbial distribution, metabolic potential, and environmental variables. Twenty geochemically distinct geothermal ecosystems representing a broad spectrum of Yellowstone hot-spring environments were used for metagenomic and geochemical analysis and included approximately equal numbers of: (1) phototrophic mats, (2) “filamentous streamer” communities, and (3) archaeal-dominated sediments. The metagenomes were analyzed using a suite of complementary and integrative bioinformatic tools, including phylogenetic and functional analysis of both individual sequence reads and assemblies of predominant phylotypes.This volume identifies major environmental determinants of a large number of thermophilic microbial lineages, many of which have not been fully described in the literature nor previously cultivated to enable functional and genomic analyses. Moreover, protein family abundance comparisons and in-depth analyses of specific genes and metabolic pathways relevant to these hot-spring environments reveal hallmark signatures ofmore »
- Authors:
-
- Montana State Univ., Bozeman, MT (United States). Dept. of Land Resources and Environmental Sciences; Montana State Univ., Bozeman, MT (United States). Thermal Biology Inst.
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Technical Univ. of Denmark, Hørsholm (Denmark). Novo Nordisk Foundation Center for Biosustainability
- Indiana Univ., Bloomington, IN (United States). Center for Genomics and Bioinformatics
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
- OSTI Identifier:
- 1628082
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 4; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Microbiology; thermophiles; geochemistry; microbial interactions; microbial mats; functional genomics
Citation Formats
Inskeep, William, Jay, Zackary J., Tringe, Susannah G., Herrgard, Markus J., and Rusch, Douglas B. The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem. United States: N. p., 2013.
Web. doi:10.3389/fmicb.2013.00067.
Inskeep, William, Jay, Zackary J., Tringe, Susannah G., Herrgard, Markus J., & Rusch, Douglas B. The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem. United States. https://doi.org/10.3389/fmicb.2013.00067
Inskeep, William, Jay, Zackary J., Tringe, Susannah G., Herrgard, Markus J., and Rusch, Douglas B. Tue .
"The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem". United States. https://doi.org/10.3389/fmicb.2013.00067. https://www.osti.gov/servlets/purl/1628082.
@article{osti_1628082,
title = {The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem},
author = {Inskeep, William and Jay, Zackary J. and Tringe, Susannah G. and Herrgard, Markus J. and Rusch, Douglas B.},
abstractNote = {The Yellowstone geothermal complex contains over 10,000 diverse geothermal features that host numerous phylogenetically deeply rooted and poorly understood archaea, bacteria, and viruses. Microbial communities in high-temperature environments are generally less diverse than soil, marine, sediment, or lake habitats and therefore offer a tremendous opportunity for studying the structure and function of different model microbial communities using environmental metagenomics. One of the broader goals of this study was to establish linkages among microbial distribution, metabolic potential, and environmental variables. Twenty geochemically distinct geothermal ecosystems representing a broad spectrum of Yellowstone hot-spring environments were used for metagenomic and geochemical analysis and included approximately equal numbers of: (1) phototrophic mats, (2) “filamentous streamer” communities, and (3) archaeal-dominated sediments. The metagenomes were analyzed using a suite of complementary and integrative bioinformatic tools, including phylogenetic and functional analysis of both individual sequence reads and assemblies of predominant phylotypes.This volume identifies major environmental determinants of a large number of thermophilic microbial lineages, many of which have not been fully described in the literature nor previously cultivated to enable functional and genomic analyses. Moreover, protein family abundance comparisons and in-depth analyses of specific genes and metabolic pathways relevant to these hot-spring environments reveal hallmark signatures of metabolic capabilities that parallel the distribution of phylotypes across specific types of geochemical environments.},
doi = {10.3389/fmicb.2013.00067},
journal = {Frontiers in Microbiology},
number = ,
volume = 4,
place = {United States},
year = {Tue Jan 01 00:00:00 EST 2013},
month = {Tue Jan 01 00:00:00 EST 2013}
}
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Works referenced in this record:
Sulfur geochemistry of hydrothermal waters in Yellowstone National Park: IV Acid–sulfate waters
journal, February 2009
- Kirk Nordstrom, D.; Blaine McCleskey, R.; Ball, James W.
- Applied Geochemistry, Vol. 24, Issue 2
The Continuing Puzzle of the Great Oxidation Event
journal, July 2009
- Sessions, Alex L.; Doughty, David M.; Welander, Paula V.
- Current Biology, Vol. 19, Issue 14
Rapid Oxidation of Arsenite in a Hot Spring Ecosystem, Yellowstone National Park
journal, August 2001
- Langner, Heiko W.; Jackson, Colin R.; McDermott, Timothy R.
- Environmental Science & Technology, Vol. 35, Issue 16
Microbial essentials at hydrothermal vents
journal, April 2000
- Reysenbach, Anna-Louise; Banta, Amy B.; Boone, David R.
- Nature, Vol. 404, Issue 6780
Functional genomic analysis of an uncultured δ-proteobacterium in the sponge Cymbastela concentrica
journal, September 2010
- Liu, Michael Yizhe; Kjelleberg, Staffan; Thomas, Torsten
- The ISME Journal, Vol. 5, Issue 3
Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential
journal, June 2011
- Klatt, Christian G.; Wood, Jason M.; Rusch, Douglas B.
- The ISME Journal, Vol. 5, Issue 8
Community structure and metabolism through reconstruction of microbial genomes from the environment
journal, February 2004
- Tyson, Gene W.; Chapman, Jarrod; Hugenholtz, Philip
- Nature, Vol. 428, Issue 6978
Deepening the early oxygen debate
journal, April 2009
- Konhauser, Kurt
- Nature Geoscience, Vol. 2, Issue 4
Energetics of chemolithoautotrophy in the hydrothermal system of Vulcano Island, southern Italy
journal, July 2003
- Amend, Jan P.; Rogers, Karyn L.; Shock, Everett L.
- Geobiology, Vol. 1, Issue 1
Identifying biologically relevant differences between metagenomic communities
journal, February 2010
- Parks, Donovan H.; Beiko, Robert G.
- Bioinformatics, Vol. 26, Issue 6
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes
journal, January 2007
- Selengut, J. D.; Haft, D. H.; Davidsen, T.
- Nucleic Acids Research, Vol. 35, Issue Database
Stretching and unzipping nucleic acid hairpins using a synthetic nanopore
journal, January 2008
- Zhao, Q.; Comer, J.; Dimitrov, V.
- Nucleic Acids Research, Vol. 36, Issue 5
IMG: the integrated microbial genomes database and comparative analysis system
journal, December 2011
- Markowitz, V. M.; Chen, I. -M. A.; Palaniappan, K.
- Nucleic Acids Research, Vol. 40, Issue D1
Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function
journal, October 2006
- Ward, David M.; Bateson, Mary M.; Ferris, Michael J.
- Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 361, Issue 1475
MEGAN analysis of metagenomic data
journal, February 2007
- Huson, D. H.; Auch, A. F.; Qi, J.
- Genome Research, Vol. 17, Issue 3
Application of tetranucleotide frequencies for the assignment of genomic fragments
journal, September 2004
- Teeling, Hanno; Meyerdierks, Anke; Bauer, Margarete
- Environmental Microbiology, Vol. 6, Issue 9
On the energetics of chemolithotrophy in nonequilibrium systems: case studies of geothermal springs in Yellowstone National Park
journal, October 2005
- Inskeep, W. P.; Ackerman, G. G.; Taylor, W. P.
- Geobiology, Vol. 3, Issue 4
Linking geochemical processes with microbial community analysis: successional dynamics in an arsenic-rich, acid-sulphate-chloride geothermal spring
journal, July 2004
- Macur, R. E.; Langner, H. W.; Kocar, B. D.
- Geobiology, Vol. 2, Issue 3
Energetics of overall metabolic reactions of thermophilic and hyperthermophilic Archaea and Bacteria
journal, April 2001
- Amend, Jan P.; Shock, Everett L.
- FEMS Microbiology Reviews, Vol. 25, Issue 2
Geomicrobiology: How Molecular-Scale Interactions Underpin Biogeochemical Systems
journal, May 2002
- Newman, D. K.
- Science, Vol. 296, Issue 5570
Merging Genomes with Geochemistry in Hydrothermal Ecosystems
journal, May 2002
- Reysenbach, A. -L.
- Science, Vol. 296, Issue 5570
Comparative Metagenomics of Microbial Communities
journal, April 2005
- Tringe, S. G.
- Science, Vol. 308, Issue 5721
Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
journal, January 2006
- DeLong, E. F.
- Science, Vol. 311, Issue 5760
The Microbial Engines That Drive Earth's Biogeochemical Cycles
journal, May 2008
- Falkowski, P. G.; Fenchel, T.; Delong, E. F.
- Science, Vol. 320, Issue 5879
Highly Ordered Vertical Structure of Synechococcus Populations within the One-Millimeter-Thick Photic Zone of a Hot Spring Cyanobacterial Mat
journal, March 2000
- Ramsing, N. B.; Ferris, M. J.; Ward, D. M.
- Applied and Environmental Microbiology, Vol. 66, Issue 3
Molecular Characterization of Novel Red Green Nonsulfur Bacteria from Five Distinct Hot Spring Communities in Yellowstone National Park
journal, January 2002
- Boomer, S. M.; Lodge, D. P.; Dutton, B. E.
- Applied and Environmental Microbiology, Vol. 68, Issue 1
Diel Variations in Carbon Metabolism by Green Nonsulfur-Like Bacteria in Alkaline Siliceous Hot Spring Microbial Mats from Yellowstone National Park
journal, July 2005
- van der Meer, M. T. J.; Schouten, S.; Bateson, M. M.
- Applied and Environmental Microbiology, Vol. 71, Issue 7
Comparative Genomic Evidence for a Close Relationship between the Dimorphic Prosthecate Bacteria Hyphomonas neptunium and Caulobacter crescentus
journal, October 2006
- Badger, Jonathan H.; Hoover, Timothy R.; Brun, Yves V.
- Journal of Bacteriology, Vol. 188, Issue 19
A Natural View of Microbial Biodiversity within Hot Spring Cyanobacterial Mat Communities
journal, December 1998
- Ward, David M.; Ferris, Michael J.; Nold, Stephen C.
- Microbiology and Molecular Biology Reviews, Vol. 62, Issue 4
Geochemistry and Dynamics of the Yellowstone National Park Hydrothermal System
journal, May 1989
- Fournier, R. O.
- Annual Review of Earth and Planetary Sciences, Vol. 17, Issue 1
THE EARLY HISTORY OF ATMOSPHERIC OXYGEN: Homage to Robert M. Garrels
journal, May 2005
- Canfield, D. E.
- Annual Review of Earth and Planetary Sciences, Vol. 33, Issue 1
Community-wide analysis of microbial genome sequence signatures
journal, January 2009
- Dick, Gregory J.; Andersson, Anders F.; Baker, Brett J.
- Genome Biology, Vol. 10, Issue 8
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
journal, March 2007
- Rusch, Douglas B.; Halpern, Aaron L.; Sutton, Granger
- PLoS Biology, Vol. 5, Issue 3
Accelerated Profile HMM Searches
journal, October 2011
- Eddy, Sean R.
- PLoS Computational Biology, Vol. 7, Issue 10
Metagenomes from High-Temperature Chemotrophic Systems Reveal Geochemical Controls on Microbial Community Structure and Function
journal, March 2010
- Inskeep, William P.; Rusch, Douglas B.; Jay, Zackary J.
- PLoS ONE, Vol. 5, Issue 3
TM4: A Free, Open-Source System for Microarray Data Management and Analysis
journal, February 2003
- Saeed, A. I.; Sharov, V.; White, J.
- BioTechniques, Vol. 34, Issue 2
Microbial Iron Cycling in Acidic Geothermal Springs of Yellowstone National Park: Integrating Molecular Surveys, Geochemical Processes, and Isolation of Novel Fe-Active Microorganisms
journal, January 2012
- Kozubal, Mark A.; Macur, Richard E.; Jay, Zackary J.
- Frontiers in Microbiology, Vol. 3
Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
journal, January 2013
- Takacs-Vesbach, Cristina; Inskeep, William P.; Jay, Zackary J.
- Frontiers in Microbiology, Vol. 4
Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
journal, January 2013
- Inskeep, William P.; Jay, Zackary J.; Herrgard, Markus J.
- Frontiers in Microbiology, Vol. 4
Community Structure and Function of High-Temperature Chlorophototrophic Microbial Mats Inhabiting Diverse Geothermal Environments
journal, January 2013
- Klatt, Christian G.; Inskeep, William P.; Herrgard, Markus J.
- Frontiers in Microbiology, Vol. 4
Works referencing / citing this record:
Bacterial Diversity in Replicated Hydrogen Sulfide-Rich Streams
journal, August 2018
- Hotaling, Scott; Quackenbush, Corey R.; Bennett-Ponsford, Julian
- Microbial Ecology, Vol. 77, Issue 3
A review of the mechanisms of mineral-based metabolism in early Earth analog rock-hosted hydrothermal ecosystems
journal, January 2019
- Amenabar, Maximiliano J.; Boyd, Eric S.
- World Journal of Microbiology and Biotechnology, Vol. 35, Issue 2
Metabolic dependencies drive species co-occurrence in diverse microbial communities
journal, May 2015
- Zelezniak, Aleksej; Andrejev, Sergej; Ponomarova, Olga
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 20
Life in Hot Spring Microbial Mats Located in the Trans-Mexican Volcanic Belt: A 16S/18S rRNA Gene and Metagenomic Analysis
journal, April 2018
- Prieto-Barajas, Cristina M.; Alcaraz, Luis D.; Valencia-Cantero, Eduardo
- Geomicrobiology Journal, Vol. 35, Issue 8
Geologic legacy spanning >90 years explains unique Yellowstone hot spring geochemistry and biodiversity
journal, August 2019
- Payne, Devon; Dunham, Eric C.; Mohr, Elizabeth
- Environmental Microbiology, Vol. 21, Issue 11
Climate change and geothermal ecosystems: natural laboratories, sentinel systems, and future refugia
journal, June 2014
- O'Gorman, Eoin J.; Benstead, Jonathan P.; Cross, Wyatt F.
- Global Change Biology, Vol. 20, Issue 11
Divergence with gene flow in a population of thermophilic bacteria: a potential role for spatially varying selection
journal, June 2014
- Wall, Christopher A.; Koniges, Gregory J.; Miller, Scott R.
- Molecular Ecology, Vol. 23, Issue 14
Mechanisms of Mineral Substrate Acquisition in a Thermoacidophile
journal, April 2018
- Amenabar, Maximiliano J.; Boyd, Eric S.
- Applied and Environmental Microbiology, Vol. 84, Issue 12
Global Distribution Patterns and Pangenomic Diversity of the Candidate Phylum “Latescibacteria” (WS3)
journal, March 2017
- Farag, Ibrahim F.; Youssef, Noha H.; Elshahed, Mostafa S.
- Applied and Environmental Microbiology, Vol. 83, Issue 10
Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis
journal, September 2018
- Jarett, Jessica K.; Nayfach, Stephen; Podar, Mircea
- Microbiome, Vol. 6, Issue 1
A comparison of computationally predicted functional metagenomes and microarray analysis for microbial P cycle genes in a unique basalt-soil forest
journal, January 2018
- LeBrun, Erick S.; Kang, Sanghoon
- F1000Research, Vol. 7
Latent environment allocation of microbial community data
journal, June 2018
- Higashi, Koichi; Suzuki, Shinya; Kurosawa, Shin
- PLOS Computational Biology, Vol. 14, Issue 6
The Relationship Between Microbial Community Structures and Environmental Parameters Revealed by Metagenomic Analysis of Hot Spring Water in the Kirishima Area, Japan
journal, December 2018
- Nishiyama, Eri; Higashi, Koichi; Mori, Hiroshi
- Frontiers in Bioengineering and Biotechnology, Vol. 6
Diversity of thermophiles in a Malaysian hot spring determined using 16S rRNA and shotgun metagenome sequencing
journal, March 2015
- Chan, Chia Sing; Chan, Kok-Gan; Tay, Yea-Ling
- Frontiers in Microbiology, Vol. 6
Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring Metagenomes
journal, March 2016
- Colman, Daniel R.; Jay, Zackary J.; Inskeep, William P.
- Frontiers in Microbiology, Vol. 7
Effects of Physiochemical Factors on Prokaryotic Biodiversity in Malaysian Circumneutral Hot Springs
journal, July 2017
- Chan, Chia S.; Chan, Kok-Gan; Ee, Robson
- Frontiers in Microbiology, Vol. 8
Changes in Carbon Oxidation State of Metagenomes Along Geochemical Redox Gradients
journal, February 2019
- Dick, Jeffrey M.; Yu, Miao; Tan, Jingqiang
- Frontiers in Microbiology, Vol. 10
Archaeal Viruses from High-Temperature Environments
journal, February 2018
- Munson-McGee, Jacob; Snyder, Jamie; Young, Mark
- Genes, Vol. 9, Issue 3
The Confluence of Heavy Metal Biooxidation and Heavy Metal Resistance: Implications for Bioleaching by Extreme Thermoacidophiles
journal, July 2015
- Wheaton, Garrett; Counts, James; Mukherjee, Arpan
- Minerals, Vol. 5, Issue 3
Structure and Diversity of the Bacterial Communities in the Acid and Thermophilic Crater-Lake of the Volcano “El Chichón”, Mexico
text, January 2018
- Rincón-Molina, Clara Ivette; Hernández-García, Juan Alfredo; Rincón-Rosales, Reiner
- Taylor & Francis
Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
journal, July 2017
- Yu, Feiqiao Brian; Blainey, Paul C.; Schulz, Frederik
- eLife, Vol. 6
Bacterial and archaeal spatial distribution and its environmental drivers in an extremely haloalkaline soil at the landscape scale
journal, January 2019
- Martínez-Olivas, Martha Adriana; Jiménez-Bueno, Norma G.; Hernández-García, Juan Alfredo
- PeerJ, Vol. 7
Structure and Diversity of the Bacterial Communities in the Acid and Thermophilic Crater-Lake of the Volcano “El Chichón”, Mexico
journal, October 2018
- Rincón-Molina, Clara Ivette; Hernández-García, Juan Alfredo; Rincón-Rosales, Reiner
- Geomicrobiology Journal, Vol. 36, Issue 2
Structure and Diversity of the Bacterial Communities in the Acid and Thermophilic Crater-Lake of the Volcano “El Chichón”, Mexico
text, January 2018
- Rincón-Molina, Clara Ivette; Hernández-García, Juan Alfredo; Rincón-Rosales, Reiner
- Taylor & Francis
The influence of temperature and pH on bacterial community composition of microbial mats in hot springs from Costa Rica
journal, July 2019
- Uribe‐Lorío, Lorena; Brenes-Guillén, Laura; Hernández‐Ascencio, Walter
- MicrobiologyOpen, Vol. 8, Issue 10
Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous ‘streamer’ community
journal, July 2015
- Beam, Jacob P.; Jay, Zackary J.; Schmid, Markus C.
- The ISME Journal, Vol. 10, Issue 1
Geobiological feedbacks and the evolution of thermoacidophiles
journal, October 2017
- Colman, Daniel R.; Poudel, Saroj; Hamilton, Trinity L.
- The ISME Journal, Vol. 12, Issue 1
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
journal, January 2016
- Eloe-Fadrosh, Emiley A.; Paez-Espino, David; Jarett, Jessica
- Nature Communications, Vol. 7, Issue 1
Microbial biogeography of 925 geothermal springs in New Zealand
journal, July 2018
- Power, Jean F.; Carere, Carlo R.; Lee, Charles K.
- Nature Communications, Vol. 9, Issue 1
Mixing of meteoric and geothermal fluids supports hyperdiverse chemosynthetic hydrothermal communities
journal, February 2019
- Colman, Daniel R.; Lindsay, Melody R.; Boyd, Eric S.
- Nature Communications, Vol. 10, Issue 1
The impact of temperature on microbial diversity and AOA activity in the Tengchong Geothermal Field, China
journal, November 2015
- Li, Haizhou; Yang, Qunhui; Li, Jian
- Scientific Reports, Vol. 5, Issue 1
Microbial communities and arsenic biogeochemistry at the outflow of an alkaline sulfide-rich hot spring
journal, April 2016
- Jiang, Zhou; Li, Ping; Van Nostrand, Joy D.
- Scientific Reports, Vol. 6, Issue 1
Merging metagenomics and geochemistry reveals environmental controls on biological diversity and evolution
journal, May 2014
- Alsop, Eric B.; Boyd, Eric S.; Raymond, Jason
- BMC Ecology, Vol. 14, Issue 1
Temperature-controlled thermophilic bacterial communities in hot springs of western Sichuan, China
journal, October 2018
- Tang, Jie; Liang, Yuanmei; Jiang, Dong
- BMC Microbiology, Vol. 18, Issue 1
Microbial Community Structure and Arsenic Biogeochemistry in an Acid Vapor-Formed Spring in Tengchong Geothermal Area, China
journal, January 2016
- Jiang, Zhou; Li, Ping; Jiang, Dawei
- PLOS ONE, Vol. 11, Issue 1
The Relationship Between Microbial Community Structures and Environmental Parameters Revealed by Metagenomic Analysis of Hot Spring Water in the Kirishima Area, Japan
journal, December 2018
- Nishiyama, Eri; Higashi, Koichi; Mori, Hiroshi
- Frontiers in Bioengineering and Biotechnology, Vol. 6
Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
journal, January 2013
- Takacs-Vesbach, Cristina; Inskeep, William P.; Jay, Zackary J.
- Frontiers in Microbiology, Vol. 4
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journal, January 2013
- Inskeep, William P.; Jay, Zackary J.; Herrgard, Markus J.
- Frontiers in Microbiology, Vol. 4
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journal, January 2013
- Klatt, Christian G.; Inskeep, William P.; Herrgard, Markus J.
- Frontiers in Microbiology, Vol. 4
Diversity of thermophiles in a Malaysian hot spring determined using 16S rRNA and shotgun metagenome sequencing
journal, March 2015
- Chan, Chia Sing; Chan, Kok-Gan; Tay, Yea-Ling
- Frontiers in Microbiology, Vol. 6
The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
journal, June 2015
- Olsen, Millie T.; Nowack, Shane; Wood, Jason M.
- Frontiers in Microbiology, Vol. 6
Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function
journal, October 2015
- Inskeep, William P.; Jay, Zackary J.; Macur, Richard E.
- Frontiers in Microbiology, Vol. 6
Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring Metagenomes
journal, March 2016
- Colman, Daniel R.; Jay, Zackary J.; Inskeep, William P.
- Frontiers in Microbiology, Vol. 7
Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities
journal, February 2017
- Jennings, Ryan de Montmollin; Moran, James J.; Jay, Zackary J.
- Frontiers in Microbiology, Vol. 8
Effects of Physiochemical Factors on Prokaryotic Biodiversity in Malaysian Circumneutral Hot Springs
journal, July 2017
- Chan, Chia S.; Chan, Kok-Gan; Ee, Robson
- Frontiers in Microbiology, Vol. 8
Diurnal Changes in Active Carbon and Nitrogen Pathways Along the Temperature Gradient in Porcelana Hot Spring Microbial Mat
journal, October 2018
- Alcamán-Arias, María E.; Pedrós-Alió, Carlos; Tamames, Javier
- Frontiers in Microbiology, Vol. 9
Changes in Carbon Oxidation State of Metagenomes Along Geochemical Redox Gradients
journal, February 2019
- Dick, Jeffrey M.; Yu, Miao; Tan, Jingqiang
- Frontiers in Microbiology, Vol. 10
Archaeal Viruses from High-Temperature Environments
journal, February 2018
- Munson-McGee, Jacob; Snyder, Jamie; Young, Mark
- Genes, Vol. 9, Issue 3
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journal, January 2019
- Martínez-Olivas, Martha Adriana; Jiménez-Bueno, Norma G.; Hernández-García, Juan Alfredo
- PeerJ, Vol. 7