Structural Insights into Neutrophilic Migration Revealed by the Crystal Structure of the Chemokine Receptor CXCR2 in Complex with the First PDZ Domain of NHERF1
Abstract
Neutrophil plays an essential role in host defense against infection, but uncontrolled neutrophilic infiltration can cause inflammation and severe epithelial damage. We recently showed that CXCR2 formed a signaling complex with NHERF1 and PLC-2, and that the formation of this complex was required for intracellular calcium mobilization and neutrophilic transepithelial migration. To uncover the structural basis of the complex formation, we report here the crystal structure of the NHERF1 PDZ1 domain in complex with the C-terminal sequence of CXCR2 at 1.16 Å resolution. The structure reveals that the CXCR2 peptide binds to PDZ1 in an extended conformation with the last four residues making specific side chain interactions. Remarkably, comparison of the structure to previously studied PDZ1 domains has allowed the identification of PDZ1 ligand-specific interactions and the mechanisms that govern PDZ1 target selection diversities. In addition, we show that CXCR2 can bind both NHERF1 PDZ1 and PDZ2 in pulldown experiments, consistent with the observation that the peptide binding pockets of these two PDZ domains are highly structurally conserved. The results of this study therefore provide structural basis for the CXCR2-mediated neutrophilic migration and could have important clinical applications in the prevention and treatment of numerous neutrophil-dependent inflammatory disorders.
- Authors:
-
- Wayne State University, Detroit, MI (United States)
- Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
- Prince of Songkla University, Hat-Yai, Songkhla (Thailand)
- Publication Date:
- Research Org.:
- Argonne National Laboratory (ANL), Argonne, IL (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); Leukemia Research Foundation; Aplastic Anemia & MDS International Foundation; Elsa U. Pardee Foundation; American Heart Association
- OSTI Identifier:
- 1627642
- Grant/Contract Number:
- AC02-06CH11357
- Resource Type:
- Accepted Manuscript
- Journal Name:
- PLoS ONE
- Additional Journal Information:
- Journal Volume: 8; Journal Issue: 10; Journal ID: ISSN 1932-6203
- Publisher:
- Public Library of Science
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; crystal structure; hydrogen bonding; neutrophils; calcium signaling; drug interactions; glutathione chromatography; protein interactions; chemokines
Citation Formats
Lu, Guorong, Wu, Yanning, Jiang, Yuanyuan, Wang, Shuo, Hou, Yuning, Guan, Xiaoqing, Brunzelle, Joseph, Sirinupong, Nualpun, Sheng, Shijie, Li, Chunying, and Yang, Zhe. Structural Insights into Neutrophilic Migration Revealed by the Crystal Structure of the Chemokine Receptor CXCR2 in Complex with the First PDZ Domain of NHERF1. United States: N. p., 2013.
Web. doi:10.1371/journal.pone.0076219.
Lu, Guorong, Wu, Yanning, Jiang, Yuanyuan, Wang, Shuo, Hou, Yuning, Guan, Xiaoqing, Brunzelle, Joseph, Sirinupong, Nualpun, Sheng, Shijie, Li, Chunying, & Yang, Zhe. Structural Insights into Neutrophilic Migration Revealed by the Crystal Structure of the Chemokine Receptor CXCR2 in Complex with the First PDZ Domain of NHERF1. United States. https://doi.org/10.1371/journal.pone.0076219
Lu, Guorong, Wu, Yanning, Jiang, Yuanyuan, Wang, Shuo, Hou, Yuning, Guan, Xiaoqing, Brunzelle, Joseph, Sirinupong, Nualpun, Sheng, Shijie, Li, Chunying, and Yang, Zhe. Wed .
"Structural Insights into Neutrophilic Migration Revealed by the Crystal Structure of the Chemokine Receptor CXCR2 in Complex with the First PDZ Domain of NHERF1". United States. https://doi.org/10.1371/journal.pone.0076219. https://www.osti.gov/servlets/purl/1627642.
@article{osti_1627642,
title = {Structural Insights into Neutrophilic Migration Revealed by the Crystal Structure of the Chemokine Receptor CXCR2 in Complex with the First PDZ Domain of NHERF1},
author = {Lu, Guorong and Wu, Yanning and Jiang, Yuanyuan and Wang, Shuo and Hou, Yuning and Guan, Xiaoqing and Brunzelle, Joseph and Sirinupong, Nualpun and Sheng, Shijie and Li, Chunying and Yang, Zhe},
abstractNote = {Neutrophil plays an essential role in host defense against infection, but uncontrolled neutrophilic infiltration can cause inflammation and severe epithelial damage. We recently showed that CXCR2 formed a signaling complex with NHERF1 and PLC-2, and that the formation of this complex was required for intracellular calcium mobilization and neutrophilic transepithelial migration. To uncover the structural basis of the complex formation, we report here the crystal structure of the NHERF1 PDZ1 domain in complex with the C-terminal sequence of CXCR2 at 1.16 Å resolution. The structure reveals that the CXCR2 peptide binds to PDZ1 in an extended conformation with the last four residues making specific side chain interactions. Remarkably, comparison of the structure to previously studied PDZ1 domains has allowed the identification of PDZ1 ligand-specific interactions and the mechanisms that govern PDZ1 target selection diversities. In addition, we show that CXCR2 can bind both NHERF1 PDZ1 and PDZ2 in pulldown experiments, consistent with the observation that the peptide binding pockets of these two PDZ domains are highly structurally conserved. The results of this study therefore provide structural basis for the CXCR2-mediated neutrophilic migration and could have important clinical applications in the prevention and treatment of numerous neutrophil-dependent inflammatory disorders.},
doi = {10.1371/journal.pone.0076219},
journal = {PLoS ONE},
number = 10,
volume = 8,
place = {United States},
year = {Wed Oct 02 00:00:00 EDT 2013},
month = {Wed Oct 02 00:00:00 EDT 2013}
}
Works referenced in this record:
Directional migration of leukocytes: their pathological roles in inflammation and strategies for development of anti-inflammatory therapies
journal, June 2001
- Geng, Jian Guo
- Cell Research, Vol. 11, Issue 2
Regulation of G Protein-Coupled Receptor Function by Na + /H + Exchange Regulatory Factors
journal, August 2011
- Ardura, Juan A.; Friedman, Peter A.
- Pharmacological Reviews, Vol. 63, Issue 4
Structure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions
journal, April 2007
- Elkins, Jonathan M.; Papagrigoriou, Evangelos; Berridge, Georgina
- Protein Science, Vol. 16, Issue 4
Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1
journal, July 2013
- Bhattacharya, Shibani; Ju, Jeong Ho; Orlova, Natalia
- Journal of Molecular Biology, Vol. 425, Issue 14
Clustal W and Clustal X version 2.0
journal, September 2007
- Larkin, M. A.; Blackshields, G.; Brown, N. P.
- Bioinformatics, Vol. 23, Issue 21, p. 2947-2948
Contextual Specificity in Peptide-Mediated Protein Interactions
journal, July 2008
- Stein, Amelie; Aloy, Patrick
- PLoS ONE, Vol. 3, Issue 7
Coot model-building tools for molecular graphics
journal, November 2004
- Emsley, Paul; Cowtan, Kevin
- Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132
PDZBase: a protein-protein interaction database for PDZ-domains
journal, October 2004
- Beuming, T.; Skrabanek, L.; Niv, M. Y.
- Bioinformatics, Vol. 21, Issue 6
CXCR2 antagonists for the treatment of pulmonary disease
journal, January 2009
- Chapman, R. W.; Phillips, J. E.; Hipkin, R. W.
- Pharmacology & Therapeutics, Vol. 121, Issue 1
Expanding the role of NHERF, a PDZ-domain containing protein adapter, to growth regulation
journal, October 2001
- Voltz, James W.; Weinman, Edward J.; Shenolikar, Shirish
- Oncogene, Vol. 20, Issue 44
The Selective CXCR2 Antagonist SB272844 Blocks Interleukin-8 and Growth-related Oncogene-α-mediated Inhibition of Spontaneous Neutrophil Apoptosis
journal, May 2002
- Glynn, P. C.; Henney, E.; Hall, I. P.
- Pulmonary Pharmacology & Therapeutics, Vol. 15, Issue 2
A Specificity Map for the PDZ Domain Family
journal, September 2008
- Tonikian, Raffi; Zhang, Yingnan; Sazinsky, Stephen L.
- PLoS Biology, Vol. 6, Issue 9
Refinement of severely incomplete structures with maximum likelihood in BUSTER–TNT
journal, November 2004
- Blanc, E.; Roversi, P.; Vonrhein, C.
- Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12
Structural Basis for NHERF1 PDZ Domain Binding
journal, March 2012
- Mamonova, Tatyana; Kurnikova, Maria; Friedman, Peter A.
- Biochemistry, Vol. 51, Issue 14
Cholesterol modulates cell signaling and protein networking by specifically interacting with PDZ domain-containing scaffold proteins
journal, January 2012
- Sheng, Ren; Chen, Yong; Yung Gee, Heon
- Nature Communications, Vol. 3, Issue 1
A kinase-regulated mechanism controls CFTR channel gating by disrupting bivalent PDZ domain interactions
journal, July 2003
- Raghuram, V.; Hormuth, H.; Foskett, J. K.
- Proceedings of the National Academy of Sciences, Vol. 100, Issue 16
The CXC Chemokine Receptor 2, CXCR2, Is the Putative Receptor for ELR + CXC Chemokine-Induced Angiogenic Activity
journal, November 2000
- Addison, Christina L.; Daniel, Thomas O.; Burdick, Marie D.
- The Journal of Immunology, Vol. 165, Issue 9
Regulation of cystic fibrosis transmembrane conductance regulator single-channel gating by bivalent PDZ-domain-mediated interaction
journal, January 2001
- Raghuram, V.; Mak, D. -O. D.; Foskett, J. K.
- Proceedings of the National Academy of Sciences, Vol. 98, Issue 3
PTEN tumor suppressor associates with NHERF proteins to attenuate PDGF receptor signaling
journal, February 2006
- Takahashi, Yoko; Morales, Fabiana C.; Kreimann, Erica L.
- The EMBO Journal, Vol. 25, Issue 4
NHERF1 Regulates Parathyroid Hormone Receptor Desensitization: Interference with β-Arrestin Binding
journal, February 2009
- Wang, Bin; Yang, Yanmei; Abou-Samra, Abdul B.
- Molecular Pharmacology, Vol. 75, Issue 5
PROCHECK: a program to check the stereochemical quality of protein structures
journal, April 1993
- Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.
- Journal of Applied Crystallography, Vol. 26, Issue 2
Inhibition of CXCR2 profoundly suppresses inflammation-driven and spontaneous tumorigenesis
journal, September 2012
- Jamieson, Thomas; Clarke, Mairi; Steele, Colin W.
- Journal of Clinical Investigation, Vol. 122, Issue 9
PDZ Domains and the Organization of Supramolecular Complexes
journal, March 2001
- Sheng, Morgan; Sala, Carlo
- Annual Review of Neuroscience, Vol. 24, Issue 1
Convergent and Divergent Ligand Specificity among PDZ Domains of the LAP and Zonula Occludens (ZO) Families
journal, May 2006
- Zhang, Yingnan; Yeh, Sherry; Appleton, Brent A.
- Journal of Biological Chemistry, Vol. 281, Issue 31
Iterative-build OMIT maps: map improvement by iterative model building and refinement without model bias
journal, April 2008
- Terwilliger, Thomas C.; Grosse-Kunstleve, Ralf W.; Afonine, Pavel V.
- Acta Crystallographica Section D Biological Crystallography, Vol. 64, Issue 5
Genome-Wide Analysis of PDZ Domain Binding Reveals Inherent Functional Overlap within the PDZ Interaction Network
journal, January 2011
- te Velthuis, Aartjan J. W.; Sakalis, Philippe A.; Fowler, Donald A.
- PLoS ONE, Vol. 6, Issue 1
NHERF1 Regulates Parathyroid Hormone Receptor Membrane Retention without Affecting Recycling
journal, December 2007
- Wang, Bin; Bisello, Alessandro; Yang, Yanmei
- Journal of Biological Chemistry, Vol. 282, Issue 50
PTEN, NHERF1 and PHLPP form a tumor suppressor network that is disabled in glioblastoma
journal, August 2011
- Molina, J. R.; Agarwal, N. K.; Morales, F. C.
- Oncogene, Vol. 31, Issue 10
Structural and functional analysis of the PDZ domains of human HtrA1 and HtrA3
journal, November 2007
- Runyon, Steven T.; Zhang, Yingnan; Appleton, Brent A.
- Protein Science, Vol. 16, Issue 11
[20] Processing of X-ray diffraction data collected in oscillation mode
book, January 1997
- Otwinowski, Zbyszek; Minor, Wladek
- Macromolecular Crystallography Part A, 307-326
The Role of Flexibility and Conformational Selection in the Binding Promiscuity of PDZ Domains
journal, November 2012
- Münz, Márton; Hein, Jotun; Biggin, Philip C.
- PLoS Computational Biology, Vol. 8, Issue 11
Phaser crystallographic software
journal, July 2007
- McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
- Journal of Applied Crystallography, Vol. 40, Issue 4
The role of CXC chemokines and their receptors in cancer
journal, August 2008
- Vandercappellen, Jo; Van Damme, Jo; Struyf, Sofie
- Cancer Letters, Vol. 267, Issue 2
Structural Basis of the Na+/H+ Exchanger Regulatory Factor PDZ1 Interaction with the Carboxyl-terminal Region of the Cystic Fibrosis Transmembrane Conductance Regulator
journal, January 2001
- Karthikeyan, Subramanian; Leung, Teli; Ladias, John A. A.
- Journal of Biological Chemistry, Vol. 276, Issue 23
The Relative Binding Affinities of PDZ Partners for CFTR: A Biochemical Basis for Efficient Endocytic Recycling
journal, August 2008
- Cushing, Patrick R.; Fellows, Abigail; Villone, Daniel
- Biochemistry, Vol. 47, Issue 38
Mechanism and role of PDZ domains in signaling complex assembly
journal, September 2001
- Harris, Baruch Z.; Lim, Wendell A.
- Journal of Cell Science, Vol. 114, Issue 18
The Selective CXCR2 Antagonist SB272844 Blocks Interleukin-8 and Growth-related Oncogene-α-mediated Inhibition of Spontaneous Neutrophil Apoptosis
journal, May 2002
- Glynn, P. C.; Henney, E.; Hall, I. P.
- Pulmonary Pharmacology & Therapeutics, Vol. 15, Issue 2
The role of CXC chemokines and their receptors in cancer
journal, August 2008
- Vandercappellen, Jo; Van Damme, Jo; Struyf, Sofie
- Cancer Letters, Vol. 267, Issue 2
CXCR2 antagonists for the treatment of pulmonary disease
journal, January 2009
- Chapman, R. W.; Phillips, J. E.; Hipkin, R. W.
- Pharmacology & Therapeutics, Vol. 121, Issue 1
Peptide binding consensus of the NHE-RF-PDZ1 domain matches the C-terminal sequence of cystic fibrosis transmembrane conductance regulator (CFTR)
journal, May 1998
- Wang, Shusheng; Raab, Ronald W.; Schatz, Peter J.
- FEBS Letters, Vol. 427, Issue 1
The Chemokine Receptor CXCR2 Controls Positioning of Oligodendrocyte Precursors in Developing Spinal Cord by Arresting Their Migration
journal, August 2002
- Tsai, Hui-Hsin; Frost, Emma; To, Vivien
- Cell, Vol. 110, Issue 3
Structural Basis for NHERF1 PDZ Domain Binding
journal, March 2012
- Mamonova, Tatyana; Kurnikova, Maria; Friedman, Peter A.
- Biochemistry, Vol. 51, Issue 14
Cholesterol modulates cell signaling and protein networking by specifically interacting with PDZ domain-containing scaffold proteins
journal, January 2012
- Sheng, Ren; Chen, Yong; Yung Gee, Heon
- Nature Communications, Vol. 3, Issue 1
Directional migration of leukocytes: their pathological roles in inflammation and strategies for development of anti-inflammatory therapies
journal, June 2001
- Geng, Jian Guo
- Cell Research, Vol. 11, Issue 2
A kinase-regulated mechanism controls CFTR channel gating by disrupting bivalent PDZ domain interactions
journal, July 2003
- Raghuram, V.; Hormuth, H.; Foskett, J. K.
- Proceedings of the National Academy of Sciences, Vol. 100, Issue 16
PDZ domains: More than just a glue
journal, January 2001
- Bezprozvanny, Ilya; Maximov, Anton
- Proceedings of the National Academy of Sciences, Vol. 98, Issue 3
A Chemokine Receptor CXCR2 Macromolecular Complex Regulates Neutrophil Functions in Inflammatory Diseases
journal, February 2012
- Wu, Yanning; Wang, Shuo; Farooq, Shukkur M.
- Journal of Biological Chemistry, Vol. 287, Issue 8
Structural Determinants of the Na + /H + Exchanger Regulatory Factor Interaction with the β 2 Adrenergic and Platelet-derived Growth Factor Receptors
journal, March 2002
- Karthikeyan, Subramanian; Leung, Teli; Ladias, John A. A.
- Journal of Biological Chemistry, Vol. 277, Issue 21
Phosphorylation of PDZ1 Domain Attenuates NHERF-1 Binding to Cellular Targets
journal, November 2007
- Voltz, James W.; Brush, Matthew; Sikes, Suzanne
- Journal of Biological Chemistry, Vol. 282, Issue 46
NHERF1 acts as a molecular switch to program metastatic behavior and organotropism via its PDZ domains
journal, June 2012
- Cardone, Rosa Angela; Greco, Maria Raffaella; Capulli, Mattia
- Molecular Biology of the Cell, Vol. 23, Issue 11
PDZBase: a protein-protein interaction database for PDZ-domains
journal, October 2004
- Beuming, T.; Skrabanek, L.; Niv, M. Y.
- Bioinformatics, Vol. 21, Issue 6
Structure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions
journal, April 2007
- Elkins, Jonathan M.; Papagrigoriou, Evangelos; Berridge, Georgina
- Protein Science, Vol. 16, Issue 4
Structural and functional analysis of the PDZ domains of human HtrA1 and HtrA3
journal, November 2007
- Runyon, Steven T.; Zhang, Yingnan; Appleton, Brent A.
- Protein Science, Vol. 16, Issue 11
NHERF1 Regulates Parathyroid Hormone Receptor Desensitization: Interference with β-Arrestin Binding
journal, February 2009
- Wang, Bin; Yang, Yanmei; Abou-Samra, Abdul B.
- Molecular Pharmacology, Vol. 75, Issue 5
NHERF1/EBP50 Head-to-Tail Intramolecular Interaction Masks Association with PDZ Domain Ligands
journal, January 2007
- Morales, F. C.; Takahashi, Y.; Momin, S.
- Molecular and Cellular Biology, Vol. 27, Issue 7
PDZ Domains and the Organization of Supramolecular Complexes
journal, March 2001
- Sheng, Morgan; Sala, Carlo
- Annual Review of Neuroscience, Vol. 24, Issue 1
Signal complex regulation of renal transport proteins: NHERF and regulation of NHE3 by PKA
journal, September 2000
- Weinman, Edward J.; Minkoff, Charles; Shenolikar, Shirish
- American Journal of Physiology-Renal Physiology, Vol. 279, Issue 3
PDZ domains and their binding partners: structure, specificity, and modification
journal, May 2010
- Lee, Ho-Jin; Zheng, Jie J.
- Cell Communication and Signaling, Vol. 8, Issue 1
Mechanism and role of PDZ domains in signaling complex assembly
journal, September 2001
- Harris, Baruch Z.; Lim, Wendell A.
- Journal of Cell Science, Vol. 114, Issue 18
A Specificity Map for the PDZ Domain Family
journal, September 2008
- Tonikian, Raffi; Zhang, Yingnan; Sazinsky, Stephen L.
- PLoS Biology, Vol. 6, Issue 9
The Role of Flexibility and Conformational Selection in the Binding Promiscuity of PDZ Domains
journal, November 2012
- Münz, Márton; Hein, Jotun; Biggin, Philip C.
- PLoS Computational Biology, Vol. 8, Issue 11
Genome-Wide Analysis of PDZ Domain Binding Reveals Inherent Functional Overlap within the PDZ Interaction Network
journal, January 2011
- te Velthuis, Aartjan J. W.; Sakalis, Philippe A.; Fowler, Donald A.
- PLoS ONE, Vol. 6, Issue 1
Iterative-build OMIT maps: map improvement by iterative model building and refinement without model bias.
text, January 2008
- Terwilliger, Thomas C.; Grosse-Kunstleve, Ralf W.; Afonine, Pavel V.
- Apollo - University of Cambridge Repository
The CXC Chemokine Receptor 2, CXCR2, Is the Putative Receptor for ELR + CXC Chemokine-Induced Angiogenic Activity
journal, November 2000
- Addison, Christina L.; Daniel, Thomas O.; Burdick, Marie D.
- The Journal of Immunology, Vol. 165, Issue 9
Works referencing / citing this record:
Canonical and Noncanonical Sites Determine NPT2A Binding Selectivity to NHERF1 PDZ1
journal, June 2015
- Mamonova, Tatyana; Zhang, Qiangmin; Khajeh, Jahan Ali
- PLOS ONE, Vol. 10, Issue 6