The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria
Abstract
Anaeromyxobacter dehalogenans strain 2CP-C is a versaphilic delta-Proteobacterium distributed throughout many diverse soil and sediment environments. 16S rRNA gene phylogenetic analysis groups A. dehalogenans together with the myxobacteria, which have distinguishing characteristics including strictly aerobic metabolism, sporulation, fruiting body formation, and surface motility. Analysis of the 5.01 Mb strain 2CP-C genome substantiated that this organism is a myxobacterium but shares genotypic traits with the anaerobic majority of the delta-Proteobacteria (i.e., the Desulfuromonadales). Reflective of its respiratory versatility, strain 2CP-C possesses 68 genes coding for putative c-type cytochromes, including one gene with 40 heme binding motifs. Consistent with its relatedness to the myxobacteria, surface motility was observed in strain 2CP-C and multiple types of motility genes are present, including 28 genes for gliding, adventurous (A-) motility and 17 genes for type IV pilus-based motility (i.e., social (S-) motility) that all have homologs in Myxococcus xanthus. Although A. dehalogenans shares many metabolic traits with the anaerobic majority of the delta-Proteobacteria, strain 2CP-C grows under microaerophilic conditions and possesses detoxification systems for reactive oxygen species. Accordingly, two gene clusters coding for NADH dehydrogenase subunits and two cytochrome oxidase gene clusters in strain 2CP-C are similar to those in M. xanthus. Remarkably, strain 2CP-Cmore »
- Authors:
-
- Georgia Institute of Technology, Atlanta, GA (United States)
- University of Iowa, Iowa City, IA (United States)
- University of Georgia, Athens, GA (United States)
- University of Illinois at Urbana-Champaign, IL (United States)
- Publication Date:
- Research Org.:
- Georgia Institute of Technology, Atlanta, GA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)
- OSTI Identifier:
- 1627347
- Grant/Contract Number:
- AC02-05CH11231; DGE 0114400; 0338261
- Resource Type:
- Accepted Manuscript
- Journal Name:
- PLoS ONE
- Additional Journal Information:
- Journal Volume: 3; Journal Issue: 5; Journal ID: ISSN 1932-6203
- Publisher:
- Public Library of Science
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; genomics; bacterial genomics; anaerobic bacteria; pathogen motility; phylogenetics; horizontal gene transfer; evolutionary genetics; genome analysis
Citation Formats
Thomas, Sara H., Wagner, Ryan D., Arakaki, Adrian K., Skolnick, Jeffrey, Kirby, John R., Shimkets, Lawrence J., Sanford, Robert A., and Löffler, Frank E. The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria. United States: N. p., 2008.
Web. doi:10.1371/journal.pone.0002103.
Thomas, Sara H., Wagner, Ryan D., Arakaki, Adrian K., Skolnick, Jeffrey, Kirby, John R., Shimkets, Lawrence J., Sanford, Robert A., & Löffler, Frank E. The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria. United States. https://doi.org/10.1371/journal.pone.0002103
Thomas, Sara H., Wagner, Ryan D., Arakaki, Adrian K., Skolnick, Jeffrey, Kirby, John R., Shimkets, Lawrence J., Sanford, Robert A., and Löffler, Frank E. Wed .
"The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria". United States. https://doi.org/10.1371/journal.pone.0002103. https://www.osti.gov/servlets/purl/1627347.
@article{osti_1627347,
title = {The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria},
author = {Thomas, Sara H. and Wagner, Ryan D. and Arakaki, Adrian K. and Skolnick, Jeffrey and Kirby, John R. and Shimkets, Lawrence J. and Sanford, Robert A. and Löffler, Frank E.},
abstractNote = {Anaeromyxobacter dehalogenans strain 2CP-C is a versaphilic delta-Proteobacterium distributed throughout many diverse soil and sediment environments. 16S rRNA gene phylogenetic analysis groups A. dehalogenans together with the myxobacteria, which have distinguishing characteristics including strictly aerobic metabolism, sporulation, fruiting body formation, and surface motility. Analysis of the 5.01 Mb strain 2CP-C genome substantiated that this organism is a myxobacterium but shares genotypic traits with the anaerobic majority of the delta-Proteobacteria (i.e., the Desulfuromonadales). Reflective of its respiratory versatility, strain 2CP-C possesses 68 genes coding for putative c-type cytochromes, including one gene with 40 heme binding motifs. Consistent with its relatedness to the myxobacteria, surface motility was observed in strain 2CP-C and multiple types of motility genes are present, including 28 genes for gliding, adventurous (A-) motility and 17 genes for type IV pilus-based motility (i.e., social (S-) motility) that all have homologs in Myxococcus xanthus. Although A. dehalogenans shares many metabolic traits with the anaerobic majority of the delta-Proteobacteria, strain 2CP-C grows under microaerophilic conditions and possesses detoxification systems for reactive oxygen species. Accordingly, two gene clusters coding for NADH dehydrogenase subunits and two cytochrome oxidase gene clusters in strain 2CP-C are similar to those in M. xanthus. Remarkably, strain 2CP-C possesses a third NADH dehydrogenase gene cluster and a cytochrome cbb3 oxidase gene cluster, apparently acquired through ancient horizontal gene transfer from a strictly anaerobic green sulfur bacterium. The mosaic nature of the A. dehalogenans strain 2CP-C genome suggests that the metabolically versatile, anaerobic members of the delta-Proteobacteria may have descended from aerobic ancestors with complex lifestyles.},
doi = {10.1371/journal.pone.0002103},
journal = {PLoS ONE},
number = 5,
volume = 3,
place = {United States},
year = {Wed May 07 00:00:00 EDT 2008},
month = {Wed May 07 00:00:00 EDT 2008}
}
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