Web Apollo: a web-based genomic annotation editing platform

Lee, Eduardo; Helt, Gregg A.; Reese, Justin T.; Munoz-Torres, Monica C.; Childers, Chris P.; Buels, Robert M.; Stein, Lincoln; Holmes, Ian H.; Elsik, Christine G.; Lewis, Suzanna E.

doi:10.1186/gb-2013-14-8-r93

Title: Web Apollo: a web-based genomic annotation editing platform

Journal Article · Tue Jan 01 04:00:00 UTC 2013 · GenomeBiology.com

DOI: https://doi.org/10.1186/gb-2013-14-8-r93 · OSTI ID:1626744

Lee, Eduardo ^[1]; Helt, Gregg A. ^[2]; Reese, Justin T. ^[3]; Munoz-Torres, Monica C. ^[2]; Childers, Chris P. ^[4]; Buels, Robert M. ^[5]; Stein, Lincoln ^[6]; Holmes, Ian H. ^[7]; Elsik, Christine G. ^[8]; Lewis, Suzanna E. ^[2]

Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Genomics Division; DOE/OSTI
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Genomics Division
Univ. of Missouri, Columbia, MO (United States). Division of Animal Sciences
Univ. of Missouri, Columbia, MO (United States). Division of Animal Sciences
Univ. of California, Berkeley, CA (United States). Dept. of Bioengineering
Ontario Inst. of Cancer Research, Toronto, ON (Canada ); Univ. of Toronto, ON (Canada). Dept. of Molecular Genetics
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Genomics Division; Univ. of California, Berkeley, CA (United States). Dept. of Bioengineering
Univ. of Missouri, Columbia, MO (United States). Division of Animal Sciences; Univ. of Missouri, Columbia, MO (United States). Division of Plant Sciences

Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researchers require tools to describe the functional features of their newly sequenced genomes. With Web Apollo researchers can use any of the common browsers (for example, Chrome or Firefox) to jointly analyze and precisely describe the features of a genome in real time, whether they are in the same room or working from opposite sides of the world.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1626744

Journal Information:: GenomeBiology.com, Journal Name: GenomeBiology.com Journal Issue: 8 Vol. 14; ISSN 1465-6906

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Complete Genome Sequence of Klebsiella pneumoniae Myophage Magnus Acevedo Ugarriza, Laura E.; Michalik-Provasek, Jordyn; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01049-19	journal	September 2019
Complete Genome Sequence of Escherichia coli Siphophage Sciku Hernandez, Isla; Castillo, Micah; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 38 https://doi.org/10.1128/mra.01052-19	journal	September 2019
Complete Genome Sequence of Escherichia coli Phage Pisces Diaz, Haydee; Graham, Kristin; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01054-19	journal	September 2019
Complete Genome Sequence of Escherichia coli Podophage Penshu1 Pechacek, Douglas; Hwangbo, Myung; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 38 https://doi.org/10.1128/mra.01055-19	journal	September 2019
Complete Genome Sequence of Proteus mirabilis Siphophage Saba Nguyen, James; Harb, Laith; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 41 https://doi.org/10.1128/mra.01094-19	journal	October 2019
Complete Genome Sequence of Vibrio natriegens Phage Phriendly Clark, James; Awah, Adey; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 40 https://doi.org/10.1128/mra.01096-19	journal	October 2019
Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Siphophage Seabear Patil, Ketki; Zeng, Chi; O’Leary, Chandler Microbiology Resource Announcements, Vol. 8, Issue 43 https://doi.org/10.1128/mra.01160-19	journal	October 2019
Complete Genome Sequence of Klebsiella pneumoniae Siphophage Sanco Richardson, Ryan W.; Lessor, Lauren; O’Leary, Chandler Microbiology Resource Announcements, Vol. 8, Issue 44 https://doi.org/10.1128/mra.01252-19	journal	October 2019
Complete Genome Sequence of Klebsiella pneumoniae Podophage Pylas Powell, Jeffery E.; Lessor, Lauren; O’Leary, Chandler Microbiology Resource Announcements, Vol. 8, Issue 46 https://doi.org/10.1128/mra.01287-19	journal	November 2019
Complete Genome Sequence of Proteus mirabilis Phage Mydo Jones, Benjamin T.; Lessor, Lauren; O’Leary, Chandler Microbiology Resource Announcements, Vol. 8, Issue 47 https://doi.org/10.1128/mra.01312-19	journal	November 2019
Complete Genome Sequence of Serratia Phage Muldoon Campbell, Soren; Atkison, Cameron; Moreland, Russell Microbiology Resource Announcements, Vol. 9, Issue 1 https://doi.org/10.1128/mra.01418-19	journal	January 2020
Complete Genome Sequence of Serratia marcescens Podophage Pila Melbern, Loraine; Broussard, Kathryn; Moreland, Russell Microbiology Resource Announcements, Vol. 9, Issue 1 https://doi.org/10.1128/mra.01420-19	journal	January 2020
Complete Genome Sequence of Stenotrophomonas maltophilia Myophage Moby Vicary, Alison; Newkirk, Heather; Moreland, Russell Microbiology Resource Announcements, Vol. 9, Issue 1 https://doi.org/10.1128/mra.01422-19	journal	January 2020
Complete Genome Sequence of Myophage Ec_Makalu_002, Which Infects Uropathogenic Escherichia coli Dhungana, Gunaraj; Malla, Rajani; Rajaure, Manoj Microbiology Resource Announcements, Vol. 9, Issue 5 https://doi.org/10.1128/mra.01530-19	journal	January 2020
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Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics Syme, Robert A.; Tan, Kar-Chun; Hane, James K. PLOS ONE, Vol. 11, Issue 2 https://doi.org/10.1371/journal.pone.0147221	journal	February 2016
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The C-Type Lectin Domain Gene Family in Aedes aegypti and Their Role in Arbovirus Infection Adelman, Zach; Myles, Kevin Viruses, Vol. 10, Issue 7 https://doi.org/10.3390/v10070367	journal	July 2018
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Oak genome reveals facets of long lifespan Plomion, Christophe; Aury, Jean-Marc; Amselem, Joëlle Nature Plants, Vol. 4, Issue 7 https://doi.org/10.1038/s41477-018-0172-3	journal	June 2018
Inter-chromosomal coupling between vision and pigmentation genes during genomic divergence Hench, Kosmas; Vargas, Marta; Höppner, Marc P. Nature Ecology & Evolution, Vol. 3, Issue 4 https://doi.org/10.1038/s41559-019-0814-5	journal	March 2019
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Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges Gouin, Anaïs; Bretaudeau, Anthony; Nam, Kiwoong Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-10461-4	journal	September 2017
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Complete Genome Sequence of Myophage Ec_Makalu_002, Which Infects Uropathogenic Escherichia coli Dhungana, Gunaraj; Malla, Rajani; Rajaure, Manoj Microbiology Resource Announcements, Vol. 9, Issue 5 https://doi.org/10.1128/MRA.01530-19	journal	January 2020
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Complete Genome Sequence of Klebsiella pneumoniae Podophage Patroon Tran, Rainie; Kongari, Rohit; Lessor, Lauren Microbiology Resource Announcements, Vol. 8, Issue 21 https://doi.org/10.1128/mra.00461-19	journal	May 2019
Complete Genome Sequence of Escherichia coli Myophage Minorna Rogers, Katherine; Min, Lorna; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 23 https://doi.org/10.1128/mra.00533-19	journal	June 2019
Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Siphophage Skate Rohren, Matthew; Xie, Yicheng; O’Leary, Chandler Microbiology Resource Announcements, Vol. 8, Issue 27 https://doi.org/10.1128/mra.00541-19	journal	July 2019
Complete Genome Sequence of Serratia marcescens Podophage Parlo Bockoven, Ryan; Gutierrez, Jamie; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 27 https://doi.org/10.1128/mra.00569-19	journal	July 2019
Complete Genome Sequence of Staphylococcus aureus Siphophage Lorac Marc, Antoine; Cater, Katie; Kongari, Rohit Microbiology Resource Announcements, Vol. 8, Issue 27 https://doi.org/10.1128/mra.00586-19	journal	July 2019
Complete Genome Sequence of Agrobacterium tumefaciens Myophage Milano Nittolo, Toni; Ravindran, Aravind; Gonzalez, Carlos F. Microbiology Resource Announcements, Vol. 8, Issue 25 https://doi.org/10.1128/mra.00587-19	journal	June 2019
Complete Genome Sequence of Enterotoxigenic Escherichia coli Myophage LL12 Piya, Denish; Lessor, Lauren; Liu, Mei Microbiology Resource Announcements, Vol. 8, Issue 30 https://doi.org/10.1128/mra.00675-19	journal	July 2019
Complete Genome Sequence of Salmonella enterica Serovar Heidelberg Siphophage Sepoy Marrufo, Armando M.; Zeng, Chi; O’Leary, Chandler Microbiology Resource Announcements, Vol. 8, Issue 30 https://doi.org/10.1128/mra.00680-19	journal	July 2019
Complete Genome Sequence of Enterotoxigenic Escherichia coli Podophage LL11 Theodore, Matthew; Lessor, Lauren; O’Leary, Chandler Microbiology Resource Announcements, Vol. 8, Issue 32 https://doi.org/10.1128/mra.00693-19	journal	August 2019
Complete Genome Sequence of Serratia marcescens Myophage Moabite Price, Lyndsey; Rohren, Matthew; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 29 https://doi.org/10.1128/mra.00741-19	journal	July 2019
Complete Genome Sequence of the Novel Klebsiella pneumoniae Phage Marfa Harb, Laith; Boeckman, Justin; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 29 https://doi.org/10.1128/mra.00748-19	journal	July 2019
Complete Genome Sequence of Staphylococcus aureus Siphophage Sebago Klotz, Kathryn; Korn, Abby; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 29 https://doi.org/10.1128/mra.00765-19	journal	July 2019
Complete Genome Sequence of Escherichia coli Siphophage Shashou Higbee, Tyler; Yang, Shih-Hung; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 40 https://doi.org/10.1128/mra.01016-19	journal	October 2019
Complete Genome Sequence of Salmonella enterica Myophage Matapan Juliette, Jasmine; Xie, Yicheng; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 38 https://doi.org/10.1128/mra.01017-19	journal	September 2019
Complete Genome Sequence of Xanthomonas Phage Pagan Russo, Marielle; Le, Tram; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01031-19	journal	September 2019
Complete Genome Sequence of Stenotrophomonas maltophilia Podophage Ponderosa Marquez, Alejandra; Newkirk, Heather; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01032-19	journal	September 2019
Complete Genome Sequence of Salmonella enterica Siphophage Shelanagig Broussard, Kathryn; Xie, Yicheng; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01033-19	journal	September 2019
Complete Genome Sequence of Klebsiella pneumoniae Siphophage Skenny Gramer, Jacob; Kenny, Sarah; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01036-19	journal	September 2019
Complete Genome Sequence of Shelby, a Siphophage Infecting Carbapenemase-Producing Klebsiella pneumoniae Saldana, Robert; Newkirk, Heather; Liu, Mei Microbiology Resource Announcements, Vol. 8, Issue 38 https://doi.org/10.1128/mra.01037-19	journal	September 2019
Complete Genome Sequence of Escherichia coli Myophage Mansfield D’Souza, Genevieve M.; Klotz, Kathryn; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 38 https://doi.org/10.1128/mra.01038-19	journal	September 2019
Complete Genome Sequence of Serratia marcescens Myophage MyoSmar Cooper, Savannah; Nguyen, Quang; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 38 https://doi.org/10.1128/mra.01046-19	journal	September 2019
Complete Genome Sequence of Klebsiella pneumoniae Phage Sweeny Martinez, Nicholas; Williams, Eric; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01047-19	journal	September 2019
Complete Genome Sequence of Sin4, a Siphophage Infecting Carbapenemase-Producing Klebsiella pneumoniae Castillo, Micah; Tran, Rainie; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01048-19	journal	September 2019
Complete Genome Sequence of Klebsiella pneumoniae Myophage Magnus Acevedo Ugarriza, Laura E.; Michalik-Provasek, Jordyn; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01049-19	journal	September 2019
Complete Genome Sequence of Staphylococcus aureus Myophage Maine Moreland, Russell; Korn, Abby; Newkirk, Heather Microbiology Resource Announcements, Vol. 8, Issue 40 https://doi.org/10.1128/mra.01050-19	journal	October 2019
Complete Genome Sequence of Escherichia coli Siphophage Snoke Corban, James E.; Gramer, Jacob; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 40 https://doi.org/10.1128/mra.01051-19	journal	October 2019
Complete Genome Sequence of Escherichia coli Siphophage Sciku Hernandez, Isla; Castillo, Micah; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 38 https://doi.org/10.1128/mra.01052-19	journal	September 2019
Complete Genome Sequence of Escherichia coli Siphophage Schulenberg Rivera, Madeline; Newkirk, Heather; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01053-19	journal	September 2019
Complete Genome Sequence of Escherichia coli Podophage Penshu1 Pechacek, Douglas; Hwangbo, Myung; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 38 https://doi.org/10.1128/mra.01055-19	journal	September 2019
Complete Genome Sequence of Escherichia coli Podophage Peacock Ruhlman, Erin; Bockoven, Ryan; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 39 https://doi.org/10.1128/mra.01056-19	journal	September 2019
Complete Genome Sequence of Escherichia coli Phage Paul Holt, Ashley; Saldana, Robert; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 41 https://doi.org/10.1128/mra.01093-19	journal	October 2019
Complete Genome Sequence of Proteus mirabilis Siphophage Saba Nguyen, James; Harb, Laith; Moreland, Russell Microbiology Resource Announcements, Vol. 8, Issue 41 https://doi.org/10.1128/mra.01094-19	journal	October 2019
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DensityMap: a genome viewer for illustrating the densities of features Guizard, Sébastien; Piégu, Benoît; Bigot, Yves BMC Bioinformatics, Vol. 17, Issue 1 https://doi.org/10.1186/s12859-016-1055-0	journal	May 2016
Genome content analysis yields new insights into the relationship between the human malaria parasite Plasmodium falciparum and its anopheline vectors Oppenheim, Sara J.; Rosenfeld, Jeffrey A.; DeSalle, Rob BMC Genomics, Vol. 18, Issue 1 https://doi.org/10.1186/s12864-017-3590-0	journal	February 2017
A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants Pilkington, Sarah M.; Crowhurst, Ross; Hilario, Elena BMC Genomics, Vol. 19, Issue 1 https://doi.org/10.1186/s12864-018-4656-3	journal	April 2018
Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen Frantzeskakis, Lamprinos; Kracher, Barbara; Kusch, Stefan BMC Genomics, Vol. 19, Issue 1 https://doi.org/10.1186/s12864-018-4750-6	journal	May 2018
Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew Wu, Ying; Ma, Xianfeng; Pan, Zhiyong BMC Genomics, Vol. 19, Issue 1 https://doi.org/10.1186/s12864-018-5069-z	journal	September 2018
Genome and proteome of the chlorophyll f-producing cyanobacterium Halomicronema hongdechloris: adaptative proteomic shifts under different light conditions Chen, Min; Hernandez-Prieto, Miguel A.; Loughlin, Patrick C. BMC Genomics, Vol. 20, Issue 1 https://doi.org/10.1186/s12864-019-5587-3	journal	March 2019
Secretory RING finger proteins function as effectors in a grapevine galling insect Zhao, Chaoyang; Rispe, Claude; Nabity, Paul D. BMC Genomics, Vol. 20, Issue 1 https://doi.org/10.1186/s12864-019-6313-x	journal	December 2019
Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms Tretina, Kyle; Pelle, Roger; Orvis, Joshua BMC Genomics, Vol. 21, Issue 1 https://doi.org/10.1186/s12864-020-6683-0	journal	April 2020
Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum Dennis, Alice B.; Ballesteros, Gabriel I.; Robin, Stéphanie BMC Genomics, Vol. 21, Issue 1 https://doi.org/10.1186/s12864-020-6764-0	journal	May 2020
The round goby genome provides insights into mechanisms that may facilitate biological invasions Adrian-Kalchhauser, Irene; Blomberg, Anders; Larsson, Tomas BMC Biology, Vol. 18, Issue 1 https://doi.org/10.1186/s12915-019-0731-8	journal	January 2020
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The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence Eves-van den Akker, Sebastian; Laetsch, Dominik R.; Thorpe, Peter Genome Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s13059-016-0985-1	journal	June 2016
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species Papanicolaou, Alexie; Schetelig, Marc F.; Arensburger, Peter Genome Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s13059-016-1049-2	journal	September 2016
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Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes Attardo, Geoffrey M.; Abd-Alla, Adly M. M.; Acosta-Serrano, Alvaro Genome Biology, Vol. 20, Issue 1 https://doi.org/10.1186/s13059-019-1768-2	journal	September 2019
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Ten steps to get started in Genome Assembly and Annotation Dominguez Del Angel, Victoria; Hjerde, Erik; Sterck, Lieven F1000Research, Vol. 7 https://doi.org/10.12688/f1000research.13598.1	journal	January 2018
Progression of the canonical reference malaria parasite genome from 2002–2019 Böhme, Ulrike; Otto, Thomas D.; Sanders, Mandy Wellcome Open Research, Vol. 4 https://doi.org/10.12688/wellcomeopenres.15194.2	journal	January 2019
A quick guide for student-driven community genome annotation Hosmani, Prashant S.; Shippy, Teresa; Miller, Sherry PLOS Computational Biology, Vol. 15, Issue 4 https://doi.org/10.1371/journal.pcbi.1006682	journal	April 2019
Apollo: Democratizing genome annotation Dunn, Nathan A.; Unni, Deepak R.; Diesh, Colin PLOS Computational Biology, Vol. 15, Issue 2 https://doi.org/10.1371/journal.pcbi.1006790	journal	February 2019
JBrowse Connect: A server API to connect JBrowse instances and users Yao, Eric; Buels, Robert; Stein, Lincoln PLOS Computational Biology, Vol. 16, Issue 8 https://doi.org/10.1371/journal.pcbi.1007261	journal	August 2020
An improved genome assembly of the fluke Schistosoma japonicum Luo, Fang; Yin, Mingbo; Mo, Xiaojin PLOS Neglected Tropical Diseases, Vol. 13, Issue 8 https://doi.org/10.1371/journal.pntd.0007612	journal	August 2019
Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics Syme, Robert A.; Tan, Kar-Chun; Hane, James K. PLOS ONE, Vol. 11, Issue 2 https://doi.org/10.1371/journal.pone.0147221	journal	February 2016
Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation Chen, Lianfu; Gong, Yuhua; Cai, Yingli PLOS ONE, Vol. 11, Issue 8 https://doi.org/10.1371/journal.pone.0160336	journal	August 2016
Copy number variants in kiwifruit ETHYLENE RESPONSE FACTOR/APETALA2 (ERF/AP2)-like genes show divergence in fruit ripening associated cold and ethylene responses in C-REPEAT/DRE BINDING FACTOR-like genes Gunaseelan, Kularajathevan; McAtee, Peter A.; Nardozza, Simona PLOS ONE, Vol. 14, Issue 5 https://doi.org/10.1371/journal.pone.0216120	journal	May 2019
Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae ( Neodiprion lecontei ) Linnen, Catherine R.; O’Quin, Claire T.; Shackleford, Taylor Genetics, Vol. 209, Issue 1 https://doi.org/10.1534/genetics.118.300793	journal	March 2018
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence Eves-Van Den Akker, Sebastian; Laetsch, Dominik R.; Thorpe, Peter Apollo - University of Cambridge Repository https://doi.org/10.17863/cam.25291	text	January 2016
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Panfilio, Kristen A.; Vargas Jentzsch, Iris M.; Benoit, Joshua B. Apollo - University of Cambridge Repository https://doi.org/10.17863/cam.39052	text	January 2019
Biocuration: Distilling data into knowledge. Biocuration, International Society For Public Library of Science (PLoS) https://doi.org/10.17863/cam.80210	journalarticle	January 2018
Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism Saur, Isabel M. L.; Bauer, Saskia; Kracher, Barbara RWTH Aachen University https://doi.org/10.18154/rwth-2019-02172	text	January 2019
Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum Dennis, Alice B.; Ballesteros, Gabriel I.; Robin, Stéphanie Universität Potsdam https://doi.org/10.25932/publishup-47612	text	January 2020
Global Identification of the Full-Length Transcripts and Alternative Splicing Related to Phenolic Acid Biosynthetic Genes in Salvia miltiorrhiza Xu, Zhichao; Luo, Hongmei; Ji, Aijia Frontiers in Plant Science, Vol. 7 https://doi.org/10.3389/fpls.2016.00100	journal	February 2016
A quick guide for student-driven community genome annotation Hosmani, Prashant S.; Shippy, Teresa; Miller, Sherry arXiv https://doi.org/10.48550/arxiv.1805.03602	text	January 2018
WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata. Putman, Timothy; Lelong, Sebastien; Burgstaller-Muehlbacher, Sebastian figshare https://doi.org/10.6084/m9.figshare.5150065	audiovisual	January 2017
The genome of the Hi5 germ cell line from Trichoplusia ni, an agricultural pest and novel model for small RNA biology Fu, Yu; Yang, Yujing; Zhang, Han eLife, Vol. 7 https://doi.org/10.7554/elife.31628	journal	January 2018
Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism Saur, Isabel ML; Bauer, Saskia; Kracher, Barbara eLife, Vol. 8 https://doi.org/10.7554/elife.44471	journal	February 2019
De novo genome assembly of Geosmithia morbida , the causal agent of thousand cankers disease Schuelke, Taruna A.; Westbrook, Anthony; Broders, Kirk PeerJ, Vol. 4 https://doi.org/10.7717/peerj.1952	journal	January 2016

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