skip to main content
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data

Authors:
; ; ; ; ; ; ;
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1592781
Resource Type:
Published Article
Journal Name:
Frontiers in Microbiology
Additional Journal Information:
Journal Name: Frontiers in Microbiology Journal Volume: 10; Journal ID: ISSN 1664-302X
Publisher:
Frontiers Media SA
Country of Publication:
Switzerland
Language:
English

Citation Formats

Lee, Joon-Yong, Haruta, Shin, Kato, Souichiro, Bernstein, Hans C., Lindemann, Stephen R., Lee, Dong-Yup, Fredrickson, Jim K., and Song, Hyun-Seob. Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data. Switzerland: N. p., 2020. Web. doi:10.3389/fmicb.2019.03049.
Lee, Joon-Yong, Haruta, Shin, Kato, Souichiro, Bernstein, Hans C., Lindemann, Stephen R., Lee, Dong-Yup, Fredrickson, Jim K., & Song, Hyun-Seob. Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data. Switzerland. doi:10.3389/fmicb.2019.03049.
Lee, Joon-Yong, Haruta, Shin, Kato, Souichiro, Bernstein, Hans C., Lindemann, Stephen R., Lee, Dong-Yup, Fredrickson, Jim K., and Song, Hyun-Seob. Tue . "Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data". Switzerland. doi:10.3389/fmicb.2019.03049.
@article{osti_1592781,
title = {Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data},
author = {Lee, Joon-Yong and Haruta, Shin and Kato, Souichiro and Bernstein, Hans C. and Lindemann, Stephen R. and Lee, Dong-Yup and Fredrickson, Jim K. and Song, Hyun-Seob},
abstractNote = {},
doi = {10.3389/fmicb.2019.03049},
journal = {Frontiers in Microbiology},
number = ,
volume = 10,
place = {Switzerland},
year = {2020},
month = {1}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.3389/fmicb.2019.03049

Save / Share:

Works referenced in this record:

Spatial determinants of quorum signaling in a Pseudomonas aeruginosa infection model
journal, April 2018

  • Darch, Sophie E.; Simoska, Olja; Fitzpatrick, Mignon
  • Proceedings of the National Academy of Sciences, Vol. 115, Issue 18
  • DOI: 10.1073/pnas.1719317115

Effective cellulose degradation by a mixed-culture system composed of a cellulolytic Clostridium and aerobic non-cellulolytic bacteria
journal, December 2004


Network Relationships of Bacteria in a Stable Mixed Culture
journal, January 2008


Microbial interactions: from networks to models
journal, July 2012

  • Faust, Karoline; Raes, Jeroen
  • Nature Reviews Microbiology, Vol. 10, Issue 8
  • DOI: 10.1038/nrmicro2832

Lotka-Volterra Population Models
journal, November 1978


Design Principles of Microbial Communities: From Understanding to Engineering
journal, October 2018


Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil
journal, February 2017


Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes
journal, August 2015


Identification of metolachlor mineralizing bacteria in aerobic and anaerobic soils using DNA-stable isotope probing
journal, December 2017


Stable isotope probing — linking microbial identity to function
journal, May 2005

  • Dumont, Marc G.; Murrell, J. Colin
  • Nature Reviews Microbiology, Vol. 3, Issue 6
  • DOI: 10.1038/nrmicro1162

Quantifying microbial chatter: scanning electrochemical microscopy as a tool to study interactions in biofilms
journal, December 2018

  • Darch, Sophie E.; Koley, Dipankar
  • Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 474, Issue 2220
  • DOI: 10.1098/rspa.2018.0405

Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities
journal, June 2019


Engineering microbial consortia for controllable outputs
journal, March 2016

  • Lindemann, Stephen R.; Bernstein, Hans C.; Song, Hyun-Seob
  • The ISME Journal, Vol. 10, Issue 9
  • DOI: 10.1038/ismej.2016.26

Mathematical Modeling of Microbial Community Dynamics: A Methodological Review
journal, October 2014

  • Song, Hyun-Seob; Cannon, William; Beliaev, Alexander
  • Processes, Vol. 2, Issue 4
  • DOI: 10.3390/pr2040711

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
journal, April 2010


Food-web analysis through field measurement of per capita interaction strength
journal, January 1992


Model Microbial Consortia as Tools for Understanding Complex Microbial Communities
journal, October 2018


Sequencing and beyond: integrating molecular 'omics' for microbial community profiling
journal, April 2015

  • Franzosa, Eric A.; Hsu, Tiffany; Sirota-Madi, Alexandra
  • Nature Reviews Microbiology, Vol. 13, Issue 6
  • DOI: 10.1038/nrmicro3451

Ecological and Evolutionary Interactions in Syntrophic Methanogenic Consortia
journal, January 2010

  • Kato, Souichiro; Watanabe, Kazuya
  • Microbes and Environments, Vol. 25, Issue 3
  • DOI: 10.1264/jsme2.ME10122

Limitations of Correlation-Based Inference in Complex Virus-Microbe Communities
journal, August 2018


Microbial interspecies interactions: recent findings in syntrophic consortia
journal, May 2015


Determinative Factors of Competitive Advantage between Aerobic Bacteria for Niches at the Air-Liquid Interface
journal, January 2010

  • Yamamoto, Kyosuke; Haruta, Shin; Kato, Souichiro
  • Microbes and Environments, Vol. 25, Issue 4
  • DOI: 10.1264/jsme2.ME10147

How context dependent are species interactions?
journal, April 2014

  • Chamberlain, Scott A.; Bronstein, Judith L.; Rudgers, Jennifer A.
  • Ecology Letters, Vol. 17, Issue 7
  • DOI: 10.1111/ele.12279

Microbial interactions within the plant holobiont
journal, March 2018


The Microbial Engines That Drive Earth's Biogeochemical Cycles
journal, May 2008


Stable Coexistence of Five Bacterial Strains as a Cellulose-Degrading Community
journal, November 2005