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Title: A cell-free system for production of 2,3-butanediol is robust to growth-toxic compounds

Abstract

The need for sustainable, low-cost production of bioenergy and commodity chemicals is increasing. Unfortunately, the engineering potential of whole-cell catalysts to address this need can be hampered by cellular toxicity. When such bottlenecks limit the commercial feasibility of whole-cell fermentation, cell-free, or in vitro, based approaches may offer an alternative. Here, we assess the impact of three classes of growth toxic compounds on crude extract-based, cell-free chemical conversions. As a model system, we test a metabolic pathway for conversion of glucose to 2,3-butanediol (2,3-BDO) in lysates of Escherichia coli. First, we characterized 2,3-BDO production with different classes of antibiotics and found, as expected, that the system is uninhibited by compounds that prevent cell growth by means of cell wall replication and DNA, RNA, and protein synthesis. Second, we considered the impact of polar solvent addition (e.g., methanol, n-butanol). We observed that volumetric productivities (g/L/h) were slowed with increasing hydrophobicity of added alcohols. Finally, we investigated the effects of using pretreated biomass hydrolysate as a feed stock, observing a 25% reduction in 2,3-BDO production as a result of coumaroyl and feruloyl amides. Overall, we find the cell-free system to be robust to working concentrations of antibiotics and other compounds that aremore » toxic to cell growth, but do not denature or inhibit relevant enzymes.« less

Authors:
;
Publication Date:
Research Org.:
Northwestern Univ., Evanston, IL (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; David and Lucile Packard Foundation; Dreyfus Teacher-Scholar Program
OSTI Identifier:
1575942
Alternate Identifier(s):
OSTI ID: 1660706; OSTI ID: 2298991
Grant/Contract Number:  
SC0018249
Resource Type:
Published Article
Journal Name:
Metabolic Engineering Communications
Additional Journal Information:
Journal Name: Metabolic Engineering Communications Journal Volume: 10 Journal Issue: C; Journal ID: ISSN 2214-0301
Publisher:
Elsevier
Country of Publication:
Netherlands
Language:
English
Subject:
09 BIOMASS FUELS

Citation Formats

Kay, Jennifer E., and Jewett, Michael C. A cell-free system for production of 2,3-butanediol is robust to growth-toxic compounds. Netherlands: N. p., 2019. Web. doi:10.1016/j.mec.2019.e00114.
Kay, Jennifer E., & Jewett, Michael C. A cell-free system for production of 2,3-butanediol is robust to growth-toxic compounds. Netherlands. https://doi.org/10.1016/j.mec.2019.e00114
Kay, Jennifer E., and Jewett, Michael C. Wed . "A cell-free system for production of 2,3-butanediol is robust to growth-toxic compounds". Netherlands. https://doi.org/10.1016/j.mec.2019.e00114.
@article{osti_1575942,
title = {A cell-free system for production of 2,3-butanediol is robust to growth-toxic compounds},
author = {Kay, Jennifer E. and Jewett, Michael C.},
abstractNote = {The need for sustainable, low-cost production of bioenergy and commodity chemicals is increasing. Unfortunately, the engineering potential of whole-cell catalysts to address this need can be hampered by cellular toxicity. When such bottlenecks limit the commercial feasibility of whole-cell fermentation, cell-free, or in vitro, based approaches may offer an alternative. Here, we assess the impact of three classes of growth toxic compounds on crude extract-based, cell-free chemical conversions. As a model system, we test a metabolic pathway for conversion of glucose to 2,3-butanediol (2,3-BDO) in lysates of Escherichia coli. First, we characterized 2,3-BDO production with different classes of antibiotics and found, as expected, that the system is uninhibited by compounds that prevent cell growth by means of cell wall replication and DNA, RNA, and protein synthesis. Second, we considered the impact of polar solvent addition (e.g., methanol, n-butanol). We observed that volumetric productivities (g/L/h) were slowed with increasing hydrophobicity of added alcohols. Finally, we investigated the effects of using pretreated biomass hydrolysate as a feed stock, observing a 25% reduction in 2,3-BDO production as a result of coumaroyl and feruloyl amides. Overall, we find the cell-free system to be robust to working concentrations of antibiotics and other compounds that are toxic to cell growth, but do not denature or inhibit relevant enzymes.},
doi = {10.1016/j.mec.2019.e00114},
journal = {Metabolic Engineering Communications},
number = C,
volume = 10,
place = {Netherlands},
year = {Wed Nov 20 00:00:00 EST 2019},
month = {Wed Nov 20 00:00:00 EST 2019}
}

Works referenced in this record:

How antibiotics kill bacteria: from targets to networks
journal, May 2010

  • Kohanski, Michael A.; Dwyer, Daniel J.; Collins, James J.
  • Nature Reviews Microbiology, Vol. 8, Issue 6
  • DOI: 10.1038/nrmicro2333

A synthetic biochemistry module for production of bio-based chemicals from glucose
journal, April 2016

  • Opgenorth, Paul H.; Korman, Tyler P.; Bowie, James U.
  • Nature Chemical Biology, Vol. 12, Issue 6
  • DOI: 10.1038/nchembio.2062

Isolation and characterization of ethanol-tolerant mutants of Escherichia coli KO11 for fuel ethanol production
journal, February 1998

  • Yomano, L. P.; York, S. W.; Ingram, L. O.
  • Journal of Industrial Microbiology and Biotechnology, Vol. 20, Issue 2
  • DOI: 10.1038/sj.jim.2900496

An integrated cell-free metabolic platform for protein production and synthetic biology
journal, October 2008

  • Jewett, Michael C.; Calhoun, Kara A.; Voloshin, Alexei
  • Molecular Systems Biology, Vol. 4, Issue 1, Article No. 220
  • DOI: 10.1038/msb.2008.57

Industrial biomanufacturing: The future of chemical production
journal, January 2017

  • Clomburg, James M.; Crumbley, Anna M.; Gonzalez, Ramon
  • Science, Vol. 355, Issue 6320
  • DOI: 10.1126/science.aag0804

Organic solvent-tolerant enzymes
journal, February 2010


Cell-free protein synthesis: Applications come of age
journal, September 2012


Octanol‐Water Partition Coefficients of Simple Organic Compounds
journal, July 1989

  • Sangster, James
  • Journal of Physical and Chemical Reference Data, Vol. 18, Issue 3
  • DOI: 10.1063/1.555833

High-throughput preparation methods of crude extract for robust cell-free protein synthesis
journal, March 2015

  • Kwon, Yong-Chan; Jewett, Michael C.
  • Scientific Reports, Vol. 5, Issue 1
  • DOI: 10.1038/srep08663

Cell-free metabolic engineering: Biomanufacturing beyond the cell
journal, October 2014

  • Dudley, Quentin M.; Karim, Ashty S.; Jewett, Michael C.
  • Biotechnology Journal, Vol. 10, Issue 1
  • DOI: 10.1002/biot.201400330

Butanol Tolerance in a Selection of Microorganisms
journal, December 2008


A synthetic biochemistry platform for cell free production of monoterpenes from glucose
journal, May 2017

  • Korman, Tyler P.; Opgenorth, Paul H.; Bowie, James U.
  • Nature Communications, Vol. 8, Issue 1
  • DOI: 10.1038/ncomms15526

A molecular rheostat maintains ATP levels to drive a synthetic biochemistry system
journal, July 2017

  • Opgenorth, Paul H.; Korman, Tyler P.; Iancu, Liviu
  • Nature Chemical Biology, Vol. 13, Issue 9
  • DOI: 10.1038/nchembio.2418

A synthetic biochemistry molecular purge valve module that maintains redox balance
journal, June 2014

  • Opgenorth, Paul H.; Korman, Tyler P.; Bowie, James U.
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms5113

New biotechnology paradigm: cell-free biosystems for biomanufacturing
journal, January 2013

  • Rollin, Joseph A.; Tam, Tsz Kin; Zhang, Y. -H. Percival
  • Green Chemistry, Vol. 15, Issue 7
  • DOI: 10.1039/c3gc40625c

Improvement of isopropanol production by metabolically engineered Escherichia coli using gas stripping
journal, December 2010

  • Inokuma, Kentaro; Liao, James C.; Okamoto, Masahiro
  • Journal of Bioscience and Bioengineering, Vol. 110, Issue 6
  • DOI: 10.1016/j.jbiosc.2010.07.010

Synthetic biology and the development of tools for metabolic engineering
journal, May 2012


Engineering Escherichia coli for methanol conversion
journal, March 2015


Cell-Free Metabolic Engineering: Production of Chemicals by Minimized Reaction Cascades
journal, October 2012


Controlling cell-free metabolism through physiochemical perturbations
journal, January 2018


Cellulosic hydrolysate toxicity and tolerance mechanisms in Escherichia coli
journal, January 2009

  • Mills, Tirzah Y.; Sandoval, Nicholas R.; Gill, Ryan T.
  • Biotechnology for Biofuels, Vol. 2, Issue 1, Article No. 26
  • DOI: 10.1186/1754-6834-2-26

Alcohol tolerance of Escherichia coli acrR and marR regulatory mutants
journal, April 2012


Biorefineries for the production of top building block chemicals and their derivatives
journal, March 2015


Death by a thousand cuts: the challenges and diverse landscape of lignocellulosic hydrolysate inhibitors
journal, March 2014


A cell-free platform for the prenylation of natural products and application to cannabinoid production
journal, February 2019

  • Valliere, Meaghan A.; Korman, Tyler P.; Woodall, Nicholas B.
  • Nature Communications, Vol. 10, Issue 1
  • DOI: 10.1038/s41467-019-08448-y

Metabolic pathway engineering
journal, March 2018


Cell-free protein synthesis energized by slowly-metabolized maltodextrin
journal, January 2009


Engineering synergy in biotechnology
journal, April 2014

  • Nielsen, Jens; Fussenegger, Martin; Keasling, Jay
  • Nature Chemical Biology, Vol. 10, Issue 5
  • DOI: 10.1038/nchembio.1519

Lysate of engineered Escherichia coli supports high-level conversion of glucose to 2,3-butanediol
journal, November 2015


Regeneration of adenosine triphosphate from glycolytic intermediates for cell-free protein synthesis
journal, January 2001

  • Kim, Dong-Myung; Swartz, James R.
  • Biotechnology and Bioengineering, Vol. 74, Issue 4
  • DOI: 10.1002/bit.1121

Engineering Cellular Metabolism
journal, March 2016


Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria
journal, June 2014

  • Haft, R. J. F.; Keating, D. H.; Schwaegler, T.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 25
  • DOI: 10.1073/pnas.1401853111

Chemical genomic guided engineering of gamma-valerolactone tolerant yeast
journal, January 2018