Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)
Abstract
Advances in genomic technologies have expanded our ability to accurately and exhaustively detect natural genomic variants that can be applied in crop improvement and to increase our knowledge of plant evolution and adaptation. Switchgrass (Panicum virgatum L.), an allotetraploid (2n = 4× = 36) perennial C4 grass (Poaceae family) native to North America and a feedstock crop for cellulosic biofuel production, has a large potential for genetic improvement due to its high genotypic and phenotypic variation. In this study, we analyzed single nucleotide polymorphism (SNP) variation in 372 switchgrass genotypes belonging to 36 accessions for 12 genes putatively involved in biomass production to investigate signatures of selection that could have led to ecotype differentiation and to population adaptation to geographic zones.
- Authors:
-
[1];
- Univ. of Georgia, Athens, GA (United States). Dept. of Crop and Soil Sciences; Univ. of Carthage,Tunis (Tunisia). Laboratory of Bioaggressors and Integrated Protection in Agriculture
- Univ. of Georgia, Athens, GA (United States). Dept. of Crop and Soil Sciences
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Univ. of California, Davis, CA (United States). Plant Sciences Dept.
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1559793
- Alternate Identifier(s):
- OSTI ID: 1544018
- Grant/Contract Number:
- AC02-05CH11231; PS02-06ER64304
- Resource Type:
- Accepted Manuscript
- Journal Name:
- BMC Evolutionary Biology (Online)
- Additional Journal Information:
- Journal Name: BMC Evolutionary Biology (Online); Journal Volume: 18; Journal Issue: 1; Journal ID: ISSN 1471-2148
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Evolutionary Biology; Genetics & Heredity
Citation Formats
Bahri, Bochra A., Daverdin, Guillaume, Xu, Xiangyang, Cheng, Jan-Fang, Barry, Kerrie W., Brummer, E. Charles, and Devos, Katrien M. Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.). United States: N. p., 2018.
Web. doi:10.1186/s12862-018-1193-2.
Bahri, Bochra A., Daverdin, Guillaume, Xu, Xiangyang, Cheng, Jan-Fang, Barry, Kerrie W., Brummer, E. Charles, & Devos, Katrien M. Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.). United States. https://doi.org/10.1186/s12862-018-1193-2
Bahri, Bochra A., Daverdin, Guillaume, Xu, Xiangyang, Cheng, Jan-Fang, Barry, Kerrie W., Brummer, E. Charles, and Devos, Katrien M. Thu .
"Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)". United States. https://doi.org/10.1186/s12862-018-1193-2. https://www.osti.gov/servlets/purl/1559793.
@article{osti_1559793,
title = {Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)},
author = {Bahri, Bochra A. and Daverdin, Guillaume and Xu, Xiangyang and Cheng, Jan-Fang and Barry, Kerrie W. and Brummer, E. Charles and Devos, Katrien M.},
abstractNote = {Advances in genomic technologies have expanded our ability to accurately and exhaustively detect natural genomic variants that can be applied in crop improvement and to increase our knowledge of plant evolution and adaptation. Switchgrass (Panicum virgatum L.), an allotetraploid (2n = 4× = 36) perennial C4 grass (Poaceae family) native to North America and a feedstock crop for cellulosic biofuel production, has a large potential for genetic improvement due to its high genotypic and phenotypic variation. In this study, we analyzed single nucleotide polymorphism (SNP) variation in 372 switchgrass genotypes belonging to 36 accessions for 12 genes putatively involved in biomass production to investigate signatures of selection that could have led to ecotype differentiation and to population adaptation to geographic zones.},
doi = {10.1186/s12862-018-1193-2},
journal = {BMC Evolutionary Biology (Online)},
number = 1,
volume = 18,
place = {United States},
year = {Thu Jun 14 00:00:00 EDT 2018},
month = {Thu Jun 14 00:00:00 EDT 2018}
}
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Works referencing / citing this record:
Evaluation of Switchgrass Genotypes for Cold-Tolerant Seed Germination from Native Populations in the Northeast USA
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