Megaphylogeny resolves global patterns of mushroom evolution
Abstract
Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding.
- Authors:
-
more »
- Hungarian Academy of Sciences, Szeged (Hungary)
- Eötvös Loránd Univ., Budapest (Hungary)
- Clark Univ., Worcester, MA (United States)
- Univ. of Toronto, ON (Canada)
- Univ. of Szeged (Hungary)
- Szent István Univ., Budapest (Hungary)
- Hungarian Mycological Society, Budapest (Hungary)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Dr. Rafael Ma. Moscoso National Botanical Garden, Santo Domingo (Dominican Republic)
- Moravian Museum, Brno (Czech Republic)
- Western Australian Herbarium, Kensington, WA (Australia)
- Manaaki Whenua—Landcare Research, Auckland New Zealand)
- Sorbonne Univ. (France)
- State Herbarium of South Australia, Adelaide, SA (Australia)
- Manaaki Whenua—Landcare Research, Lincoln (New Zealand)
- Univ. of Salzburg (Austria)
- San Francisco State Univ., CA (United States)
- Naturalis Biodiversity Center, Leiden (Netherlands)
- Univ. of Tennessee, Knoxville, TN (United States)
- Polish Academy of Sciences, Kraków (Poland)
- Slovak National Museum, Bratislava (Slovakia)
- Finnish Environment Inst., Helsinki (Finland)
- Univ. of Buenos Aires (Argentina)
- Jodrell Lab., Kew (United Kingdom)
- Naturalis Biodiversity Center, Leiden (Netherlands); Univ. of Oslo (Norway)
- Univ. of Utrecht (Netherlands)
- US Forest Service, Madison, WI (United States)
- Univ. of Central Oklahoma, Edmond, OK (United States)
- Univ. of Helsinki (Finland);Univ. of Tartu (Estonia)
- Russian Academy of Sciences, Ekaterinburg (Russia)
- Swedish Museum of Natural History, Stockholm (Sweden)
- Univ. of Helsinki (Finland)
- Univ. of Szeged (Hungary); MTA-SZTE ‘Lendulet’ Fungal Pathogenicity Mechanisms Research Group, Szeged (Hungary)
- Mendel Univ., Brno (Czech Republic)
- Herbarium Rooseveltensis Amanitarum, Roosevelt, NJ (United States); New York Botanical Garden, New York, NY (United States)
- Univ. of California, Berkeley, CA (United States)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Berkeley, CA (United States)
- Institut National de la Recherche Agronomique (INRA), Champenoux (France)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES). Scientific User Facilities Division; Hungarian Academy of Sciences
- OSTI Identifier:
- 1546658
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Nature Ecology and Evolution
- Additional Journal Information:
- Journal Volume: 3; Journal Issue: 4; Journal ID: ISSN 2397-334X
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Varga, Torda, Krizsán, Krisztina, Földi, Csenge, Dima, Bálint, Sánchez-García, Marisol, Sánchez-Ramírez, Santiago, Szöllősi, Gergely J., Szarkándi, János G., Papp, Viktor, Albert, László, Andreopoulos, William, Angelini, Claudio, Antonín, Vladimír, Barry, Kerrie W., Bougher, Neale L., Buchanan, Peter, Buyck, Bart, Bense, Viktória, Catcheside, Pam, Chovatia, Mansi, Cooper, Jerry, Dämon, Wolfgang, Desjardin, Dennis, Finy, Péter, Geml, József, Haridas, Sajeet, Hughes, Karen, Justo, Alfredo, Karasiński, Dariusz, Kautmanova, Ivona, Kiss, Brigitta, Kocsubé, Sándor, Kotiranta, Heikki, LaButti, Kurt M., Lechner, Bernardo E., Liimatainen, Kare, Lipzen, Anna, Lukács, Zoltán, Mihaltcheva, Sirma, Morgado, Louis N., Niskanen, Tuula, Noordeloos, Machiel E., Ohm, Robin A., Ortiz-Santana, Beatriz, Ovrebo, Clark, Rácz, Nikolett, Riley, Robert, Savchenko, Anton, Shiryaev, Anton, Soop, Karl, Spirin, Viacheslav, Szebenyi, Csilla, Tomšovský, Michal, Tulloss, Rodham E., Uehling, Jessie, Grigoriev, Igor V., Vágvölgyi, Csaba, Papp, Tamás, Martin, Francis M., Miettinen, Otto, Hibbett, David S., and Nagy, László G. Megaphylogeny resolves global patterns of mushroom evolution. United States: N. p., 2019.
Web. doi:10.1038/s41559-019-0834-1.
Varga, Torda, Krizsán, Krisztina, Földi, Csenge, Dima, Bálint, Sánchez-García, Marisol, Sánchez-Ramírez, Santiago, Szöllősi, Gergely J., Szarkándi, János G., Papp, Viktor, Albert, László, Andreopoulos, William, Angelini, Claudio, Antonín, Vladimír, Barry, Kerrie W., Bougher, Neale L., Buchanan, Peter, Buyck, Bart, Bense, Viktória, Catcheside, Pam, Chovatia, Mansi, Cooper, Jerry, Dämon, Wolfgang, Desjardin, Dennis, Finy, Péter, Geml, József, Haridas, Sajeet, Hughes, Karen, Justo, Alfredo, Karasiński, Dariusz, Kautmanova, Ivona, Kiss, Brigitta, Kocsubé, Sándor, Kotiranta, Heikki, LaButti, Kurt M., Lechner, Bernardo E., Liimatainen, Kare, Lipzen, Anna, Lukács, Zoltán, Mihaltcheva, Sirma, Morgado, Louis N., Niskanen, Tuula, Noordeloos, Machiel E., Ohm, Robin A., Ortiz-Santana, Beatriz, Ovrebo, Clark, Rácz, Nikolett, Riley, Robert, Savchenko, Anton, Shiryaev, Anton, Soop, Karl, Spirin, Viacheslav, Szebenyi, Csilla, Tomšovský, Michal, Tulloss, Rodham E., Uehling, Jessie, Grigoriev, Igor V., Vágvölgyi, Csaba, Papp, Tamás, Martin, Francis M., Miettinen, Otto, Hibbett, David S., & Nagy, László G. Megaphylogeny resolves global patterns of mushroom evolution. United States. https://doi.org/10.1038/s41559-019-0834-1
Varga, Torda, Krizsán, Krisztina, Földi, Csenge, Dima, Bálint, Sánchez-García, Marisol, Sánchez-Ramírez, Santiago, Szöllősi, Gergely J., Szarkándi, János G., Papp, Viktor, Albert, László, Andreopoulos, William, Angelini, Claudio, Antonín, Vladimír, Barry, Kerrie W., Bougher, Neale L., Buchanan, Peter, Buyck, Bart, Bense, Viktória, Catcheside, Pam, Chovatia, Mansi, Cooper, Jerry, Dämon, Wolfgang, Desjardin, Dennis, Finy, Péter, Geml, József, Haridas, Sajeet, Hughes, Karen, Justo, Alfredo, Karasiński, Dariusz, Kautmanova, Ivona, Kiss, Brigitta, Kocsubé, Sándor, Kotiranta, Heikki, LaButti, Kurt M., Lechner, Bernardo E., Liimatainen, Kare, Lipzen, Anna, Lukács, Zoltán, Mihaltcheva, Sirma, Morgado, Louis N., Niskanen, Tuula, Noordeloos, Machiel E., Ohm, Robin A., Ortiz-Santana, Beatriz, Ovrebo, Clark, Rácz, Nikolett, Riley, Robert, Savchenko, Anton, Shiryaev, Anton, Soop, Karl, Spirin, Viacheslav, Szebenyi, Csilla, Tomšovský, Michal, Tulloss, Rodham E., Uehling, Jessie, Grigoriev, Igor V., Vágvölgyi, Csaba, Papp, Tamás, Martin, Francis M., Miettinen, Otto, Hibbett, David S., and Nagy, László G. Mon .
"Megaphylogeny resolves global patterns of mushroom evolution". United States. https://doi.org/10.1038/s41559-019-0834-1. https://www.osti.gov/servlets/purl/1546658.
@article{osti_1546658,
title = {Megaphylogeny resolves global patterns of mushroom evolution},
author = {Varga, Torda and Krizsán, Krisztina and Földi, Csenge and Dima, Bálint and Sánchez-García, Marisol and Sánchez-Ramírez, Santiago and Szöllősi, Gergely J. and Szarkándi, János G. and Papp, Viktor and Albert, László and Andreopoulos, William and Angelini, Claudio and Antonín, Vladimír and Barry, Kerrie W. and Bougher, Neale L. and Buchanan, Peter and Buyck, Bart and Bense, Viktória and Catcheside, Pam and Chovatia, Mansi and Cooper, Jerry and Dämon, Wolfgang and Desjardin, Dennis and Finy, Péter and Geml, József and Haridas, Sajeet and Hughes, Karen and Justo, Alfredo and Karasiński, Dariusz and Kautmanova, Ivona and Kiss, Brigitta and Kocsubé, Sándor and Kotiranta, Heikki and LaButti, Kurt M. and Lechner, Bernardo E. and Liimatainen, Kare and Lipzen, Anna and Lukács, Zoltán and Mihaltcheva, Sirma and Morgado, Louis N. and Niskanen, Tuula and Noordeloos, Machiel E. and Ohm, Robin A. and Ortiz-Santana, Beatriz and Ovrebo, Clark and Rácz, Nikolett and Riley, Robert and Savchenko, Anton and Shiryaev, Anton and Soop, Karl and Spirin, Viacheslav and Szebenyi, Csilla and Tomšovský, Michal and Tulloss, Rodham E. and Uehling, Jessie and Grigoriev, Igor V. and Vágvölgyi, Csaba and Papp, Tamás and Martin, Francis M. and Miettinen, Otto and Hibbett, David S. and Nagy, László G.},
abstractNote = {Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding.},
doi = {10.1038/s41559-019-0834-1},
journal = {Nature Ecology and Evolution},
number = 4,
volume = 3,
place = {United States},
year = {Mon Mar 18 00:00:00 EDT 2019},
month = {Mon Mar 18 00:00:00 EDT 2019}
}
Web of Science
Works referenced in this record:
High speciation rate at temperate latitudes explains unusual diversity gradients in a clade of ectomycorrhizal fungi: CAESAR'S MUSHROOMS: LATITUDE AND DIVERSIFICATION
journal, August 2015
- Sánchez-Ramírez, Santiago; Etienne, Rampal S.; Moncalvo, Jean-Marc
- Evolution, Vol. 69, Issue 8
Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
journal, January 2002
- Sanderson, Michael J.
- Molecular Biology and Evolution, Vol. 19, Issue 1
Comparative mitochondrial genome analysis reveals intron dynamics and gene rearrangements in two Trametes species
journal, January 2021
- Chen, Cheng; Li, Qiang; Fu, Rongtao
- Scientific Reports, Vol. 11, Issue 1
Is the switch to an ectomycorrhizal state an evolutionary key innovation in mushroom-forming fungi? A case study in the Tricholomatineae (Agaricales): DIVERSIFICATION OF ECTOMYCORRHIZAL FUNGI
journal, November 2016
- Sánchez-García, Marisol; Matheny, Patrick Brandon
- Evolution, Vol. 71, Issue 1
Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures
journal, August 2016
- Moore, Brian R.; Höhna, Sebastian; May, Michael R.
- Proceedings of the National Academy of Sciences, Vol. 113, Issue 34
Fossil mushrooms from Miocene and Cretaceous ambers and the evolution of Homobasidiomycetes
journal, July 1997
- Hibbett, David S.; Grimaldi, David; Donoghue, Michael J.
- American Journal of Botany, Vol. 84, Issue 7
Major clades of Agaricales: a multilocus phylogenetic overview
journal, November 2006
- Matheny, P. Brandon; Curtis, Judd M.; Hofstetter, Valérie
- Mycologia, Vol. 98, Issue 6
Cretaceous and Eocene Poroid Hymenophores from Vancouver Island, British Columbia
journal, January 2004
- Smith, Selena Y.; Currah, Randolph S.; Stockey, Ruth A.
- Mycologia, Vol. 96, Issue 1
Adaptive radiation versus ‘radiation’ and ‘explosive diversification’: why conceptual distinctions are fundamental to understanding evolution
journal, December 2014
- Givnish, Thomas J.
- New Phytologist, Vol. 207, Issue 2
Assessing Concordance of Fossil Calibration Points in Molecular Clock Studies: An Example Using Turtles
journal, February 2005
- Near, Thomas J.; Meylan, Peter A.; Shaffer, H. Bradley
- The American Naturalist, Vol. 165, Issue 2
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
journal, December 2010
- Gnerre, S.; MacCallum, I.; Przybylski, D.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 4
BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees
journal, May 2014
- Rabosky, Daniel L.; Grundler, Michael; Anderson, Carlos
- Methods in Ecology and Evolution, Vol. 5, Issue 7
Extinction can be estimated from moderately sized molecular phylogenies: BRIEF COMMUNICATION
journal, February 2015
- Beaulieu, Jeremy M.; O'Meara, Brian C.
- Evolution, Vol. 69, Issue 4
Effects of Gasteroid Fruiting body Morphology on Diversification Rates in Three Independent Clades of Fungi Estimated Using Binary State Speciation and Extinction Analysis: Effects of Fungal Morphology on Diversification Rates
journal, January 2011
- Wilson, Andrew W.; Binder, Manfred; Hibbett, David S.
- Evolution, Vol. 65, Issue 5
Evolutionary dynamics of host specialization in wood-decay fungi
journal, August 2018
- Krah, Franz-Sebastian; Bässler, Claus; Heibl, Christoph
- BMC Evolutionary Biology, Vol. 18, Issue 1
Trends in Morphological Evolution in Homobasidiomycetes Inferred Using Maximum Likelihood: A Comparison of Binary and Multistate Approaches
journal, December 2004
- Hibbett, David S.
- Systematic Biology, Vol. 53, Issue 6
Diversitree : comparative phylogenetic analyses of diversification in R
journal, August 2012
- FitzJohn, Richard G.
- Methods in Ecology and Evolution, Vol. 3, Issue 6
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
journal, August 2007
- Talavera, Gerard; Castresana, Jose
- Systematic Biology, Vol. 56, Issue 4
After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century
journal, September 2007
- Hibbett, David S.
- Mycological Research, Vol. 111, Issue 9
Fungi and the Rise of Mammals
journal, August 2012
- Casadevall, Arturo
- PLoS Pathogens, Vol. 8, Issue 8
Absolute Diversification Rates in Angiosperm Clades
journal, January 2001
- Magallón, Susana; Sanderson, Michael J.
- Evolution, Vol. 55, Issue 9
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
journal, January 2014
- Stamatakis, Alexandros
- Bioinformatics, Vol. 30, Issue 9
The interplay of past diversification and evolutionary isolation with present imperilment across the amphibian tree of life
journal, March 2018
- Jetz, Walter; Pyron, R. Alexander
- Nature Ecology & Evolution, Vol. 2, Issue 5
Global diversity and geography of soil fungi
journal, November 2014
- Tedersoo, Leho; Bahram, Mohammad; Põlme, Sergei
- Science, Vol. 346, Issue 6213
Phanerozoic atmospheric oxygen: New results using the GEOCARBSULF model
journal, September 2009
- Berner, R. A.
- American Journal of Science, Vol. 309, Issue 7
Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification
journal, May 2011
- Goldberg, Emma E.; Lancaster, Lesley T.; Ree, Richard H.
- Systematic Biology, Vol. 60, Issue 4
Diversity and evolution of ectomycorrhizal host associations in the Sclerodermatineae (Boletales, Basidiomycota)
journal, April 2012
- Wilson, Andrew W.; Binder, Manfred; Hibbett, David S.
- New Phytologist, Vol. 194, Issue 4
Phased diploid genome assembly with single-molecule real-time sequencing
journal, October 2016
- Chin, Chen-Shan; Peluso, Paul; Sedlazeck, Fritz J.
- Nature Methods, Vol. 13, Issue 12
The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events
preprint, January 2013
- Höhna, Sebastian
- arXiv
Evolution of ectomycorrhizas as a driver of diversification and biogeographic patterns in the model mycorrhizal mushroom genus Laccaria
journal, November 2016
- Wilson, Andrew W.; Hosaka, Kentaro; Mueller, Gregory M.
- New Phytologist, Vol. 213, Issue 4
Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates
journal, July 2009
- Alfaro, M. E.; Santini, F.; Brock, C.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 32
Adaptive Radiation: Contrasting Theory with Data
journal, February 2009
- Gavrilets, S.; Losos, J. B.
- Science, Vol. 323, Issue 5915
Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
journal, June 2008
- Loytynoja, A.; Goldman, N.
- Science, Vol. 320, Issue 5883
Dimensions of biodiversity in the Earth mycobiome
journal, June 2016
- Peay, Kabir G.; Kennedy, Peter G.; Talbot, Jennifer M.
- Nature Reviews Microbiology, Vol. 14, Issue 7
From The Cover: An algorithm for progressive multiple alignment of sequences with insertions
journal, July 2005
- Loytynoja, A.; Goldman, N.
- Proceedings of the National Academy of Sciences, Vol. 102, Issue 30
Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection
journal, December 2010
- Xie, Wangang; Lewis, Paul O.; Fan, Yu
- Systematic Biology, Vol. 60, Issue 2
Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation
journal, June 2013
- Rabosky, Daniel L.; Santini, Francesco; Eastman, Jonathan
- Nature Communications, Vol. 4, Issue 1
PAML 4: Phylogenetic Analysis by Maximum Likelihood
journal, April 2007
- Yang, Z.
- Molecular Biology and Evolution, Vol. 24, Issue 8
Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads
journal, January 2010
- Martin, Jeffrey; Bruno, Vincent M.; Fang, Zhide
- BMC Genomics, Vol. 11, Issue 1
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities
journal, December 2015
- Nagy, László G.; Riley, Robert; Tritt, Andrew
- Molecular Biology and Evolution, Vol. 33, Issue 4
Patterns in vascular land plant diversification
journal, June 1983
- Niklas, Karl J.; Tiffney, Brace H.; Knoll, Andrew H.
- Nature, Vol. 303, Issue 5918
MycoCosm portal: gearing up for 1000 fungal genomes
journal, December 2013
- Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet
- Nucleic Acids Research, Vol. 42, Issue D1
Bayes Factors
journal, June 1995
- Kass, Robert E.; Raftery, Adrian E.
- Journal of the American Statistical Association, Vol. 90, Issue 430
Phylogenetic relationships of cyphelloid homobasidiomycetes
journal, November 2004
- Bodensteiner, Philomena; Binder, Manfred; Moncalvo, Jean-Marc
- Molecular Phylogenetics and Evolution, Vol. 33, Issue 2
Quantitative Traits and Diversification
journal, September 2010
- FitzJohn, Richard G.
- Systematic Biology, Vol. 59, Issue 6
Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary
journal, March 2018
- Alfaro, Michael E.; Faircloth, Brant C.; Harrington, Richard C.
- Nature Ecology & Evolution, Vol. 2, Issue 4
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
journal, June 2009
- Lartillot, Nicolas; Lepage, Thomas; Blanquart, Samuel
- Bioinformatics, Vol. 25, Issue 17
Stochastic Mapping of Morphological Characters
journal, April 2003
- Huelsenbeck, John P.; Nielsen, Rasmus; Bollback, Jonathan P.
- Systematic Biology, Vol. 52, Issue 2
An Update of Wallace’s Zoogeographic Regions of the World
journal, December 2012
- Holt, Ben G.; Lessard, Jean-Philippe; Borregaard, Michael K.
- Science, Vol. 339, Issue 6115
Into and out of the tropics: global diversification patterns in a hyperdiverse clade of ectomycorrhizal fungi
journal, January 2016
- Looney, Brian P.; Ryberg, Martin; Hampe, Felix
- Molecular Ecology, Vol. 25, Issue 2
phytools: an R package for phylogenetic comparative biology (and other things): phytools: R package
journal, December 2011
- Revell, Liam J.
- Methods in Ecology and Evolution, Vol. 3, Issue 2
Coriander Genomics Database: a genomic, transcriptomic, and metabolic database for coriander
journal, April 2020
- Song, Xiaoming; Nie, Fulei; Chen, Wei
- Horticulture Research, Vol. 7, Issue 1
Iteratively Refined Guide Trees Help Improving Alignment and Phylogenetic Inference in the Mushroom Family Bolbitiaceae
journal, February 2013
- Tóth, Annamária; Hausknecht, Anton; Krisai-Greilhuber, Irmgard
- PLoS ONE, Vol. 8, Issue 2
Bird's nest fungi (Nidulariales: Nidulariaceae) in Baltic and Dominican amber
journal, March 2014
- Poinar, George
- Fungal Biology, Vol. 118, Issue 3
The global diversity of birds in space and time
journal, October 2012
- Jetz, W.; Thomas, G. H.; Joy, J. B.
- Nature, Vol. 491, Issue 7424
GEIGER: investigating evolutionary radiations
journal, November 2007
- Harmon, L. J.; Weir, J. T.; Brock, C. D.
- Bioinformatics, Vol. 24, Issue 1
The Evolution of Defense Mechanisms Correlate with the Explosive Diversification of Autodigesting Coprinellus Mushrooms (Agaricales, Fungi)
journal, January 2012
- Nagy, László G.; Házi, Judit; Szappanos, Balázs
- Systematic Biology, Vol. 61, Issue 4
Estimating a Binary Character's Effect on Speciation and Extinction
journal, October 2007
- Maddison, Wayne P.; Midford, Peter E.; Otto, Sarah P.
- Systematic Biology, Vol. 56, Issue 5
Data from: Megaphylogeny resolves global patterns of mushroom evolution
dataset, January 2019
- Varga, Torda; Krizsán, Krisztina; Földi, Csenge
- Dryad
Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees
text, January 2014
- Rabosky, Daniel L.
- arXiv
Fungal Proliferation at the Cretaceous-Tertiary Boundary
journal, March 2004
- Vajda, V.
- Science, Vol. 303, Issue 5663
Inferring the historical patterns of biological evolution
journal, October 1999
- Pagel, Mark
- Nature, Vol. 401, Issue 6756
AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
journal, August 2007
- Nylander, J. A. A.; Wilgenbusch, J. C.; Warren, D. L.
- Bioinformatics, Vol. 24, Issue 4
The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events
journal, September 2015
- Höhna, Sebastian
- Journal of Theoretical Biology, Vol. 380
A Fossil Earthstar (Geasteraceae; Gasteromycetes) from the Late Cenozoic of Puebla, Mexico
journal, October 1993
- Magallon-Puebla, Susana; Cevallos-Ferriz, Sergio R. S.
- American Journal of Botany, Vol. 80, Issue 10
Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography
journal, April 2007
- Mittelbach, Gary G.; Schemske, Douglas W.; Cornell, Howard V.
- Ecology Letters, Vol. 10, Issue 4
Variation in forest soil fungal diversity along a latitudinal gradient
journal, November 2013
- Shi, Ling-Ling; Mortimer, Peter E.; Ferry Slik, J. W.
- Fungal Diversity, Vol. 64, Issue 1
Biotic and environmental dynamics through the Late Jurassic–Early Cretaceous transition: evidence for protracted faunal and ecological turnover
text, January 2018
- Tennant, Jonathan; Mannion, Philip; Upchurch, Paul
- PaleorXiv
The angiosperm radiation revisited, an ecological explanation for Darwin’s ‘abominable mystery’
journal, September 2009
- Berendse, Frank; Scheffer, Marten
- Ecology Letters, Vol. 12, Issue 9
A Bayesian approach for detecting the impact of mass-extinction events on molecular phylogenies when rates of lineage diversification may vary
journal, May 2016
- May, Michael R.; Höhna, Sebastian; Moore, Brian R.
- Methods in Ecology and Evolution, Vol. 7, Issue 8
Challenges in the estimation of extinction from molecular phylogenies: A response to Beaulieu and O'Meara: BRIEF COMMUNICATION
journal, December 2015
- Rabosky, Daniel L.
- Evolution, Vol. 70, Issue 1
Major clades of Agaricales: a multilocus phylogenetic overview
journal, November 2006
- Matheny, P. B.; Curtis, J. M.; Hofstetter, V.
- Mycologia, Vol. 98, Issue 6
Extinction Rates Should not be Estimated from Molecular Phylogenies: Estimating Extinction from Molecular Phylogenies
journal, December 2009
- Rabosky, Daniel L.
- Evolution, Vol. 64, Issue 6
Absolute Diversification Rates in Angiosperm Clades
journal, September 2001
- Magallon, Susana; Sanderson, Michael J.
- Evolution, Vol. 55, Issue 9
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
journal, June 2012
- Floudas, Dimitrios; Binder, Manfred; Riley, Robert
- Science, Vol. 336, Issue 6089
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
journal, February 2015
- Kohler, Annegret; Kuo, Alan; Nagy, Laszlo G.
- Nature Genetics, Vol. 47, Issue 4
Cretaceous and Eocene poroid hymenophores from Vancouver Island, British Columbia
journal, January 2004
- Smith, Selena Y.; Currah, Randolph S.; Stockey, Ruth A.
- Mycologia, Vol. 96, Issue 1
Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies
journal, October 2009
- FitzJohn, Richard G.; Maddison, Wayne P.; Otto, Sarah P.
- Systematic Biology, Vol. 58, Issue 6
A fossil earthstar (Geasteraceae; Gasteromycetes) from the Late Cenozoic of Puebla, Mexico
journal, October 1993
- Magallon-Puebla, Susana; Cevallos-Ferriz, Sergio R. S.
- American Journal of Botany, Vol. 80, Issue 10
phangorn: phylogenetic analysis in R
journal, December 2010
- Schliep, Klaus Peter
- Bioinformatics, Vol. 27, Issue 4
Evolution of complex fruiting–body morphologies in homobasidiomycetes
journal, October 2002
- Hibbett, David S.; Binder, Manfred
- Proceedings of the Royal Society of London. Series B: Biological Sciences, Vol. 269, Issue 1504
Contemporaneous radiations of fungi and plants linked to symbiosis
journal, December 2018
- Lutzoni, François; Nowak, Michael D.; Alfaro, Michael E.
- Nature Communications, Vol. 9, Issue 1
Temporal lags and overlap in the diversification of weevils and flowering plants
journal, April 2009
- McKenna, Duane D.; Sequeira, Andrea S.; Marvaldi, Adriana E.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 17
Palaeotropical origins, boreotropical distribution and increased rates of diversification in a clade of edible ectomycorrhizal mushrooms ( Amanita section Caesareae )
journal, August 2014
- Sánchez-Ramírez, Santiago; Tulloss, Rodham E.; Amalfi, Mario
- Journal of Biogeography, Vol. 42, Issue 2
BLAST+: architecture and applications
journal, January 2009
- Camacho, Christiam; Coulouris, George; Avagyan, Vahram
- BMC Bioinformatics, Vol. 10, Issue 1
FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
journal, June 2015
- Lam, Ka-Kit; LaButti, Kurt; Khalak, Asif
- Bioinformatics, Vol. 31, Issue 19
Fast simulation of reconstructed phylogenies under global time-dependent birth–death processes
journal, March 2013
- Höhna, Sebastian
- Bioinformatics, Vol. 29, Issue 11
Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees
journal, February 2014
- Rabosky, Daniel L.
- PLoS ONE, Vol. 9, Issue 2
Estimating the rate of evolution of the rate of molecular evolution
journal, December 1998
- Thorne, J. L.; Kishino, H.; Painter, I. S.
- Molecular Biology and Evolution, Vol. 15, Issue 12
APE: Analyses of Phylogenetics and Evolution in R language
journal, January 2004
- Paradis, E.; Claude, J.; Strimmer, K.
- Bioinformatics, Vol. 20, Issue 2
Biotic and environmental dynamics through the Late Jurassic-Early Cretaceous transition: evidence for protracted faunal and ecological turnover: Jurassic-Cretaceous biotic and abiotic dynamics
journal, February 2016
- Tennant, Jonathan P.; Mannion, Philip D.; Upchurch, Paul
- Biological Reviews, Vol. 92, Issue 2
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
text, January 2014
- Stamatakis, A.
- Karlsruhe
Birth-death prior on phylogeny and speed dating
journal, January 2008
- Akerborg, Orjan; Sennblad, Bengt; Lagergren, Jens
- BMC Evolutionary Biology, Vol. 8, Issue 1
Data from: Megaphylogeny resolves global patterns of mushroom evolution
dataset, January 2019
- Varga, Torda; Krizsán, Krisztina; Földi, Csenge
- Dryad
A fossil earthstar (Geasteraceae; Gasteromycetes) from the Late Cenozoic of Puebla, Mexico
journal, October 1993
- Magallon-Puebla, Susana; Cevallos-Ferriz, Sergio R. S.
- American Journal of Botany, Vol. 80, Issue 10
The staden sequence analysis package
journal, June 1996
- Staden, Rodger
- Molecular Biotechnology, Vol. 5, Issue 3
Corrigendum to “Bird's nest fungi (Nidulariales: Nidulariaceae) in Baltic and Dominican amber” [Fungal Biology 118 (2014) 325–329]
journal, May 2014
- Poinar, George
- Fungal Biology, Vol. 118, Issue 5-6
The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events
journal, September 2015
- Höhna, Sebastian
- Journal of Theoretical Biology, Vol. 380
After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century
journal, September 2007
- Hibbett, David S.
- Mycological Research, Vol. 111, Issue 9
Phylogenetic relationships of cyphelloid homobasidiomycetes
journal, November 2004
- Bodensteiner, Philomena; Binder, Manfred; Moncalvo, Jean-Marc
- Molecular Phylogenetics and Evolution, Vol. 33, Issue 2
Patterns in vascular land plant diversification
journal, June 1983
- Niklas, Karl J.; Tiffney, Brace H.; Knoll, Andrew H.
- Nature, Vol. 303, Issue 5918
Inferring the historical patterns of biological evolution
journal, October 1999
- Pagel, Mark
- Nature, Vol. 401, Issue 6756
Contemporaneous radiations of fungi and plants linked to symbiosis
journal, December 2018
- Lutzoni, François; Nowak, Michael D.; Alfaro, Michael E.
- Nature Communications, Vol. 9, Issue 1
The interplay of past diversification and evolutionary isolation with present imperilment across the amphibian tree of life
journal, March 2018
- Jetz, Walter; Pyron, R. Alexander
- Nature Ecology & Evolution, Vol. 2, Issue 5
Lifestyle preferences drive the structure and diversity of bacterial and archaeal communities in a small riverine reservoir
journal, July 2020
- Borrego, Carles; Sabater, Sergi; Proia, Lorenzo
- Scientific Reports, Vol. 10, Issue 1
Mind the gaps: Progress in progressive alignment
journal, July 2005
- Higgins, D. G.; Blackshields, G.; Wallace, I. M.
- Proceedings of the National Academy of Sciences, Vol. 102, Issue 30
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
journal, December 2010
- Gnerre, S.; MacCallum, I.; Przybylski, D.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 4
Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures
journal, August 2016
- Moore, Brian R.; Höhna, Sebastian; May, Michael R.
- Proceedings of the National Academy of Sciences, Vol. 113, Issue 34
Stochastic Mapping of Morphological Characters
journal, April 2003
- Huelsenbeck, John P.; Nielsen, Rasmus; Bollback, Jonathan P.
- Systematic Biology, Vol. 52, Issue 2
Trends in Morphological Evolution in Homobasidiomycetes Inferred Using Maximum Likelihood: A Comparison of Binary and Multistate Approaches
journal, December 2004
- Hibbett, David S.
- Systematic Biology, Vol. 53, Issue 6
Estimating a Binary Character's Effect on Speciation and Extinction
journal, October 2007
- Maddison, Wayne P.; Midford, Peter E.; Otto, Sarah P.
- Systematic Biology, Vol. 56, Issue 5
Cretaceous and Eocene poroid hymenophores from Vancouver Island, British Columbia
journal, January 2004
- Smith, Selena Y.; Currah, Randolph S.; Stockey, Ruth A.
- Mycologia, Vol. 96, Issue 1
Major clades of Agaricales: a multilocus phylogenetic overview
journal, November 2006
- Matheny, P. Brandon; Curtis, Judd M.; Hofstetter, Valérie
- Mycologia, Vol. 98, Issue 6
Caveats on the Use of Fossil Calibrations for Molecular Dating: A Comment on Near et al.
journal, January 2008
- Parham, James F.; Irmis, Randall B.
- The American Naturalist, Vol. 171, Issue 1
APE: Analyses of Phylogenetics and Evolution in R language
journal, January 2004
- Paradis, E.; Claude, J.; Strimmer, K.
- Bioinformatics, Vol. 20, Issue 2
AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
journal, August 2007
- Nylander, J. A. A.; Wilgenbusch, J. C.; Warren, D. L.
- Bioinformatics, Vol. 24, Issue 4
GEIGER: investigating evolutionary radiations
journal, November 2007
- Harmon, L. J.; Weir, J. T.; Brock, C. D.
- Bioinformatics, Vol. 24, Issue 1
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
journal, June 2009
- Lartillot, Nicolas; Lepage, Thomas; Blanquart, Samuel
- Bioinformatics, Vol. 25, Issue 17
phangorn: phylogenetic analysis in R
journal, December 2010
- Schliep, Klaus Peter
- Bioinformatics, Vol. 27, Issue 4
Fast simulation of reconstructed phylogenies under global time-dependent birth–death processes
journal, March 2013
- Höhna, Sebastian
- Bioinformatics, Vol. 29, Issue 11
PAML 4: Phylogenetic Analysis by Maximum Likelihood
journal, April 2007
- Yang, Z.
- Molecular Biology and Evolution, Vol. 24, Issue 8
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities
journal, December 2015
- Nagy, László G.; Riley, Robert; Tritt, Andrew
- Molecular Biology and Evolution, Vol. 33, Issue 4
Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
journal, January 2002
- Sanderson, Michael J.
- Molecular Biology and Evolution, Vol. 19, Issue 1
Estimating the rate of evolution of the rate of molecular evolution
journal, December 1998
- Thorne, J. L.; Kishino, H.; Painter, I. S.
- Molecular Biology and Evolution, Vol. 15, Issue 12
Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies
journal, October 2009
- FitzJohn, Richard G.; Maddison, Wayne P.; Otto, Sarah P.
- Systematic Biology, Vol. 58, Issue 6
Quantitative Traits and Diversification
journal, September 2010
- FitzJohn, Richard G.
- Systematic Biology, Vol. 59, Issue 6
Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection
journal, December 2010
- Xie, Wangang; Lewis, Paul O.; Fan, Yu
- Systematic Biology, Vol. 60, Issue 2
The Evolution of Defense Mechanisms Correlate with the Explosive Diversification of Autodigesting Coprinellus Mushrooms (Agaricales, Fungi)
journal, January 2012
- Nagy, László G.; Házi, Judit; Szappanos, Balázs
- Systematic Biology, Vol. 61, Issue 4
Evolution of complex fruiting–body morphologies in homobasidiomycetes
journal, October 2002
- Hibbett, David S.; Binder, Manfred
- Proceedings of the Royal Society of London. Series B: Biological Sciences, Vol. 269, Issue 1504
Estimating diversification rates for higher taxa: BAMM can give problematic estimates of rates and rate shifts
journal, November 2017
- Meyer, Andreas L. S.; Wiens, John J.
- Evolution, Vol. 72, Issue 1
Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography
journal, April 2007
- Mittelbach, Gary G.; Schemske, Douglas W.; Cornell, Howard V.
- Ecology Letters, Vol. 10, Issue 4
The angiosperm radiation revisited, an ecological explanation for Darwin’s ‘abominable mystery’
journal, September 2009
- Berendse, Frank; Scheffer, Marten
- Ecology Letters, Vol. 12, Issue 9
Diversity and evolution of ectomycorrhizal host associations in the Sclerodermatineae (Boletales, Basidiomycota)
journal, April 2012
- Wilson, Andrew W.; Binder, Manfred; Hibbett, David S.
- New Phytologist, Vol. 194, Issue 4
Into and out of the tropics: global diversification patterns in a hyperdiverse clade of ectomycorrhizal fungi
journal, January 2016
- Looney, Brian P.; Ryberg, Martin; Hampe, Felix
- Molecular Ecology, Vol. 25, Issue 2
Adaptive radiation versus ‘radiation’ and ‘explosive diversification’: why conceptual distinctions are fundamental to understanding evolution
journal, December 2014
- Givnish, Thomas J.
- New Phytologist, Vol. 207, Issue 2
Evolution of ectomycorrhizas as a driver of diversification and biogeographic patterns in the model mycorrhizal mushroom genus Laccaria
journal, November 2016
- Wilson, Andrew W.; Hosaka, Kentaro; Mueller, Gregory M.
- New Phytologist, Vol. 213, Issue 4
Adaptive Radiation: Contrasting Theory with Data
journal, February 2009
- Gavrilets, S.; Losos, J. B.
- Science, Vol. 323, Issue 5915
Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
journal, June 2008
- Loytynoja, A.; Goldman, N.
- Science, Vol. 320, Issue 5883
Regularized gene selection in cancer microarray meta-analysis
journal, January 2009
- Ma, Shuangge; Huang, Jian
- BMC Bioinformatics, Vol. 10, Issue 1
Birth-death prior on phylogeny and speed dating
journal, January 2008
- Akerborg, Orjan; Sennblad, Bengt; Lagergren, Jens
- BMC Evolutionary Biology, Vol. 8, Issue 1
Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees
journal, February 2014
- Rabosky, Daniel L.
- PLoS ONE, Vol. 9, Issue 2
Fungi and the Rise of Mammals
journal, August 2012
- Casadevall, Arturo
- PLoS Pathogens, Vol. 8, Issue 8
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
text, January 2014
- Stamatakis, A.
- Karlsruhe
Works referencing / citing this record:
The late blooming amphipods: Global change promoted post-Jurassic ecological radiation despite Palaeozoic origin
journal, February 2020
- Copilaş-Ciocianu, Denis; Borko, Špela; Fišer, Cene
- Molecular Phylogenetics and Evolution, Vol. 143
annonex2embl: automatic preparation of annotated DNA sequences for bulk submissions to ENA
text, January 2019
- Gruenstaeudl, Michael
- Zenodo
annonex2embl: automatic preparation of annotated DNA sequences for bulk submissions to ENA
text, January 2019
- Gruenstaeudl, Michael
- Zenodo
How important is it to consider lineage diversification heterogeneity in macroevolutionary studies? Lessons from the lizard family Liolaemidae
journal, February 2020
- Olave, Melisa; Avila, Luciano J.; Sites, Jack W.
- Journal of Biogeography, Vol. 47, Issue 6
Genera of Inocybaceae: New skin for the old ceremony
journal, December 2019
- Matheny, P. Brandon; Hobbs, Alicia M.; Esteve-Raventós, Fernando
- Mycologia, Vol. 112, Issue 1
Comparative Proteomic Analysis of Pleurotus ostreatus Reveals Great Metabolic Differences in the Cap and Stipe Development and the Potential Role of Ca2+ in the Primordium Differentiation
journal, December 2019
- Zhu, Weiwei; Hu, Jinbo; Li, Yang
- International Journal of Molecular Sciences, Vol. 20, Issue 24
Peroxidase evolution in white-rot fungi follows wood lignin evolution in plants
journal, August 2019
- Ayuso-Fernández, Iván; Rencoret, Jorge; Gutiérrez, Ana
- Proceedings of the National Academy of Sciences, Vol. 116, Issue 36
Fungi trapped in amber—a fossil legacy frozen in time
journal, June 2019
- Halbwachs, Hans
- Mycological Progress, Vol. 18, Issue 7
Notes, outline and divergence times of Basidiomycota
journal, November 2019
- He, Mao-Qiang; Zhao, Rui-Lin; Hyde, Kevin D.
- Fungal Diversity, Vol. 99, Issue 1
Treehouse: a user-friendly application to obtain subtrees from large phylogenies
journal, August 2019
- Steenwyk, Jacob L.; Rokas, Antonis
- BMC Research Notes, Vol. 12, Issue 1
Enabling community-based metrology for wood-degrading fungi
journal, March 2020
- Perez, Rolando; Luccioni, Marina; Kamakaka, Rohinton
- Fungal Biology and Biotechnology, Vol. 7, Issue 1
Phylogeny, distribution and time divergence of Fuscoporia (Hymenochaetaceae, Basidiomycota) with the description of a new species from Dhofar region, southern part of Oman
journal, October 2022
- Hussain, Shah; Al-Kharousi, Moza; Al-Muharabi, Marwa A.
- Phytotaxa, Vol. 570, Issue 2
Data from: Megaphylogeny resolves global patterns of mushroom evolution
dataset, January 2019
- Varga, Torda; Krizsán, Krisztina; Földi, Csenge
- Dryad
annonex2embl: automatic preparation of annotated DNA sequences for bulk submissions to ENA
text, January 2019
- Gruenstaeudl, Michael
- Zenodo
Data from: Megaphylogeny resolves global patterns of mushroom evolution
dataset, January 2019
- Varga, Torda; Krizsán, Krisztina; Földi, Csenge
- Dryad
Notes, outline and divergence times of Basidiomycota
journal, November 2019
- He, Mao-Qiang; Zhao, Rui-Lin; Hyde, Kevin D.
- Fungal Diversity, Vol. 99, Issue 1
Fungal sporocarps house diverse and host-specific communities of fungicolous fungi
journal, January 2021
- Maurice, Sundy; Arnault, Gontran; Nordén, Jenni
- The ISME Journal, Vol. 15, Issue 5
Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms
journal, February 2020
- Shirouzu, Takashi; Matsuoka, Shunsuke; Doi, Hideyuki
- Scientific Reports, Vol. 10, Issue 1
Peroxidase evolution in white-rot fungi follows wood lignin evolution in plants
journal, August 2019
- Ayuso-Fernández, Iván; Rencoret, Jorge; Gutiérrez, Ana
- Proceedings of the National Academy of Sciences, Vol. 116, Issue 36
Lyophyllum pallidofumosum sp. nov. (Lyophyllaceae, Agaricales), from southwestern China
journal, December 2022
- Ma, Yuanhao; Liu, Ping; Zhao, Ziyue
- Phytotaxa, Vol. 576, Issue 2
Two new species of Hohenbuehelia (Pleurotaceae) from China
journal, January 2023
- Qi, Liangliang; Ge, Yupeng; Li, Liying
- Phytotaxa, Vol. 578, Issue 2
Cyphelloporia bialoviesensis (Fungi, Agaricales)—a new genus and species for a giant cyphelloid fungus from Białowieża virgin forest in Poland
journal, March 2023
- KarasiŃSki, Dariusz; Nagy, LÁSzlÓ G.; SzarkÁNdi, JÁNos GergÖ
- Phytotaxa, Vol. 589, Issue 2
Treehouse: a user-friendly application to obtain subtrees from large phylogenies
journal, August 2019
- Steenwyk, Jacob L.; Rokas, Antonis
- BMC Research Notes, Vol. 12, Issue 1
Enabling community-based metrology for wood-degrading fungi
journal, March 2020
- Perez, Rolando; Luccioni, Marina; Kamakaka, Rohinton
- Fungal Biology and Biotechnology, Vol. 7, Issue 1