Genome Sequence of a Staphylococcus xylosus Clinical Isolate, Strain SMA0341-04 (UGA5), from Siaya County Referral Hospital in Siaya, Kenya
Abstract
We report here the genome sequence of a Staphylococcus xylosus clinical isolate, strain SMA0341-04 (UGA5), which contains one chromosome and at least one plasmid. Notably, strain SMA0341-04 (UGA5) contains the tetracycline efflux major facilitator superfamily (MFS) transporter ( tetK ) gene.
- Authors:
-
- Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, USA
- Biosecurity and Public Health, Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
- Theoretical Biology and Biophysics, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
- Physical Chemistry and Applied Spectroscopy, Chemistry Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
- University of New Mexico Laboratories of Parasitic and Viral Diseases, Kisumu, Kenya
- Department of Medical Laboratory Sciences, School of Public Health, Biomedical Sciences and Technology, Masinde Muliro University of Science and Technology, Kakamega, Kenya
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1507452
- Resource Type:
- Published Article
- Journal Name:
- Microbiology Resource Announcements
- Additional Journal Information:
- Journal Name: Microbiology Resource Announcements Journal Volume: 8 Journal Issue: 16; Journal ID: ISSN 2576-098X
- Publisher:
- American Society for Microbiology
- Country of Publication:
- United States
- Language:
- English
Citation Formats
Cheng, Qiuying, Xie, Gary, Daligault, Hajnalka, Davenport, Karen, Gleasner, Cheryl, Jacobs, Lindsey, Kubicek-Sutherland, Jessica, LeCuyer, Tessa, Otieno, Vincent, Raballah, Evans, Doggett, Norman, McMahon, Benjamin, Perkins, Douglas J., Mukundan, Harshini, and Dunning Hotopp, ed., Julie C. Genome Sequence of a Staphylococcus xylosus Clinical Isolate, Strain SMA0341-04 (UGA5), from Siaya County Referral Hospital in Siaya, Kenya. United States: N. p., 2019.
Web. doi:10.1128/MRA.01625-18.
Cheng, Qiuying, Xie, Gary, Daligault, Hajnalka, Davenport, Karen, Gleasner, Cheryl, Jacobs, Lindsey, Kubicek-Sutherland, Jessica, LeCuyer, Tessa, Otieno, Vincent, Raballah, Evans, Doggett, Norman, McMahon, Benjamin, Perkins, Douglas J., Mukundan, Harshini, & Dunning Hotopp, ed., Julie C. Genome Sequence of a Staphylococcus xylosus Clinical Isolate, Strain SMA0341-04 (UGA5), from Siaya County Referral Hospital in Siaya, Kenya. United States. https://doi.org/10.1128/MRA.01625-18
Cheng, Qiuying, Xie, Gary, Daligault, Hajnalka, Davenport, Karen, Gleasner, Cheryl, Jacobs, Lindsey, Kubicek-Sutherland, Jessica, LeCuyer, Tessa, Otieno, Vincent, Raballah, Evans, Doggett, Norman, McMahon, Benjamin, Perkins, Douglas J., Mukundan, Harshini, and Dunning Hotopp, ed., Julie C. Thu .
"Genome Sequence of a Staphylococcus xylosus Clinical Isolate, Strain SMA0341-04 (UGA5), from Siaya County Referral Hospital in Siaya, Kenya". United States. https://doi.org/10.1128/MRA.01625-18.
@article{osti_1507452,
title = {Genome Sequence of a Staphylococcus xylosus Clinical Isolate, Strain SMA0341-04 (UGA5), from Siaya County Referral Hospital in Siaya, Kenya},
author = {Cheng, Qiuying and Xie, Gary and Daligault, Hajnalka and Davenport, Karen and Gleasner, Cheryl and Jacobs, Lindsey and Kubicek-Sutherland, Jessica and LeCuyer, Tessa and Otieno, Vincent and Raballah, Evans and Doggett, Norman and McMahon, Benjamin and Perkins, Douglas J. and Mukundan, Harshini and Dunning Hotopp, ed., Julie C.},
abstractNote = {We report here the genome sequence of a Staphylococcus xylosus clinical isolate, strain SMA0341-04 (UGA5), which contains one chromosome and at least one plasmid. Notably, strain SMA0341-04 (UGA5) contains the tetracycline efflux major facilitator superfamily (MFS) transporter ( tetK ) gene.},
doi = {10.1128/MRA.01625-18},
journal = {Microbiology Resource Announcements},
number = 16,
volume = 8,
place = {United States},
year = {Thu Apr 18 00:00:00 EDT 2019},
month = {Thu Apr 18 00:00:00 EDT 2019}
}
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1128/MRA.01625-18
https://doi.org/10.1128/MRA.01625-18
Other availability
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
An Ergatis-based prokaryotic genome annotation web server
journal, March 2010
- Hemmerich, Chris; Buechlein, Aaron; Podicheti, Ram
- Bioinformatics, Vol. 26, Issue 8
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
journal, April 2012
- Peng, Y.; Leung, H. C. M.; Yiu, S. M.
- Bioinformatics, Vol. 28, Issue 11
Antibiotic resistance patterns of coagulase-negative staphylococcus strains isolated from blood cultures of septicemic patients in Turkey
journal, January 2009
- Koksal, F.; Yasar, H.; Samasti, M.
- Microbiological Research, Vol. 164, Issue 4
Microbiological profile in Serra ewes' cheese during ripening
journal, July 1995
- Macedo, A. C.; Malcata, F. X.; Hogg, T. A.
- Journal of Applied Bacteriology, Vol. 79, Issue 1
Isolation and Species Distribution of Staphylococci from Animal and Human Skin
journal, January 2002
- Nagase, Naoko; Sasaki, Asako; Yamashita, Kenji
- Journal of Veterinary Medical Science, Vol. 64, Issue 3
Coagulase-negative staphylococci (CNS) as an aetiological factor of mastitis in cows
journal, September 2013
- Bochniarz, M.; Wawron, W.; Szczubiał, M.
- Polish Journal of Veterinary Sciences, Vol. 16, Issue 3
Staphylococcus epidermidis And Staphylococcus xylosus In A Secondary Root Canal Infection With Persistent Symptoms: A Case Report
journal, August 2002
- Siqueira, J. F.; Lima, K. C.
- Australian Endodontic Journal, Vol. 28, Issue 2
Viability of Staphylococcus xylosus isolated from artisanal sausages for application as starter cultures in meat products
journal, January 2009
- Fiorentini, Ângela Maria; Sawitzki, Maristela Cortez; Bertol, Teresinha Marisa
- Brazilian Journal of Microbiology, Vol. 40, Issue 1
Isolation and Characterization of Staphylococci from Human Skin I. Amended Descriptions of Staphylococcus epidermidis and Staphylococcus saprophyticus and Descriptions of Three New Species: Staphylococcus cohnii, Staphylococcus haemolyticus, and Staphylococcus xylosus
journal, January 1975
- Schleifer, K. H.; Kloos, W. E.
- International Journal of Systematic Bacteriology, Vol. 25, Issue 1
Multiresistance of Staphylococcus xylosus and Staphylococcus equorum from Slovak Bryndza cheese
journal, October 2013
- Mikulášová, Mária; Valáriková, Jana; Dušinský, Roman
- Folia Microbiologica, Vol. 59, Issue 3
Identification and antibiotic susceptibility of coagulase negative staphylococci isolated in corneal/external infections
journal, July 1999
- Pinna, A.; Zanetti, S.; Sotgiu, M.
- British Journal of Ophthalmology, Vol. 83, Issue 7
Fast and accurate short read alignment with Burrows-Wheeler transform
journal, May 2009
- Li, H.; Durbin, R.
- Bioinformatics, Vol. 25, Issue 14
Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler
journal, December 2009
- Zerbino, Daniel R.; McEwen, Gayle K.; Margulies, Elliott H.
- PLoS ONE, Vol. 4, Issue 12
Rapid evaluation and quality control of next generation sequencing data with FaQCs
journal, November 2014
- Lo, Chien-Chi; Chain, Patrick S. G.
- BMC Bioinformatics, Vol. 15, Issue 1
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
journal, February 2008
- Zerbino, D. R.; Birney, E.
- Genome Research, Vol. 18, Issue 5
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
journal, March 1998
- Ewing, Brent; Green, Phil
- Genome Research, Vol. 8, Issue 3
Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
journal, March 1998
- Ewing, Brent; Hillier, LaDeana; Wendl, Michael C.
- Genome Research, Vol. 8, Issue 3
Consed: A Graphical Tool for Sequence Finishing
journal, March 1998
- Gordon, David; Abajian, Chris; Green, Phil
- Genome Research, Vol. 8, Issue 3
The RAST Server: Rapid Annotations using Subsystems Technology
journal, January 2008
- Aziz, Ramy K.; Bartels, Daniela; Best, Aaron A.
- BMC Genomics, Vol. 9, Issue 1, Article No. 75
Identification of Staphylococcus xylosus Isolated from C57BL/6J- Nos2 tm1Lau Mice with Dermatitis
journal, September 2002
- Won, Young Suk; Kwon, Hyo Jung; Oh, Goo Taeg
- Microbiology and Immunology, Vol. 46, Issue 9