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Title: Expression of an endoglucanase–cellobiohydrolase fusion protein in Saccharomyces cerevisiae, Yarrowia lipolytica, and Lipomyces starkeyi

Abstract

The low secretion levels of cellobiohydrolase I (CBHI) in yeasts are one of the key barriers preventing yeast from directly degrading and utilizing lignocellulose. To overcome this obstacle, we have explored the approach of genetically linking an easily secreted protein to CBHI, with CBHI being the last to be folded. The Trichoderma reesei eg2 (TrEGII) gene was selected as the leading gene due to its previously demonstrated outstanding secretion in yeast. To comprehensively characterize the effects of this fusion protein, we tested this hypothesis in three industrially relevant yeasts: Saccharomyces cerevisiae, Yarrowia lipolytica, and Lipomyces starkeyi. Our initial assays with the L. starkeyi secretome expressing differing TrEGII domains fused to a chimeric Talaromyces emersonii-T. reesei CBHI (TeTrCBHI) showed that the complete TrEGII enzyme, including the glycoside hydrolase (GH) 5 domain is required for increased expression level of the fusion protein when linked to CBHI. We found that this new construct (TrEGII-TeTrCBHI, Fusion 3) had an increased secretion level of at least threefold in L. starkeyi compared to the expression level of the chimeric TeTrCBHI. However, the same improvements were not observed when Fusion 3 construct was expressed in S. cerevisiae and Y. lipolytica. Digestion of pretreated corn stover with themore » secretomes of Y. lipolytica and L. starkeyi showed that conversion was much better using Y. lipolytica secretomes (50% versus 29%, respectively). In Y. lipolytica, TeTrCBHI performed better than the fusion construct. Furthermore, S. cerevisiae expression of Fusion 3 construct was poor and only minimal activity was observed when acting on the substrate, pNP-cellobiose. No activity was observed for the pNP-lactose substrate. Clearly, this approach is not universally applicable to all yeasts, but works in specific cases. With purified protein and soluble substrates, the exoglucanase activity of the GH7 domain embedded in the Fusion 3 construct in L. starkeyi was significantly higher than that of the GH7 domain in TeTrCBHI expressed alone. It is probable that a higher fraction of fusion construct CBHI is in an active form in Fusion 3 compared to just TeTrCBHI. We conclude that the strategy of leading TeTrCBHI expression with a linked TrEGII module significantly improved the expression of active CBHI in L. starkeyi.« less

Authors:
; ; ; ; ; ; ; ; ORCiD logo
Publication Date:
Research Org.:
National Renewable Energy Laboratory (NREL), Golden, CO (United States)
Sponsoring Org.:
USDOE Office of Energy Efficiency and Renewable Energy (EERE), Office of Sustainable Transportation. Bioenergy Technologies Office (BETO); USDOE Office of Energy Efficiency and Renewable Energy (EERE), Sustainable Transportation Office. Bioenergy Technologies Office (BETO)
OSTI Identifier:
1618741
Alternate Identifier(s):
OSTI ID: 1500069
Report Number(s):
NREL/JA-2700-71429
Journal ID: ISSN 1754-6834; 322; PII: 1301
Grant/Contract Number:  
AC36-08GO28308
Resource Type:
Published Article
Journal Name:
Biotechnology for Biofuels
Additional Journal Information:
Journal Name: Biotechnology for Biofuels Journal Volume: 11 Journal Issue: 1; Journal ID: ISSN 1754-6834
Publisher:
Springer Science + Business Media
Country of Publication:
Netherlands
Language:
English
Subject:
09 BIOMASS FUELS; fusion protein; oleaginous yeast; CBHI; consolidated bioprocessing; cellulase; cellobiohydrolase

Citation Formats

Xu, Qi, Alahuhta, Markus, Wei, Hui, Knoshaug, Eric P., Wang, Wei, Baker, John O., Vander Wall, Todd, Himmel, Michael E., and Zhang, Min. Expression of an endoglucanase–cellobiohydrolase fusion protein in Saccharomyces cerevisiae, Yarrowia lipolytica, and Lipomyces starkeyi. Netherlands: N. p., 2018. Web. doi:10.1186/s13068-018-1301-y.
Xu, Qi, Alahuhta, Markus, Wei, Hui, Knoshaug, Eric P., Wang, Wei, Baker, John O., Vander Wall, Todd, Himmel, Michael E., & Zhang, Min. Expression of an endoglucanase–cellobiohydrolase fusion protein in Saccharomyces cerevisiae, Yarrowia lipolytica, and Lipomyces starkeyi. Netherlands. https://doi.org/10.1186/s13068-018-1301-y
Xu, Qi, Alahuhta, Markus, Wei, Hui, Knoshaug, Eric P., Wang, Wei, Baker, John O., Vander Wall, Todd, Himmel, Michael E., and Zhang, Min. Mon . "Expression of an endoglucanase–cellobiohydrolase fusion protein in Saccharomyces cerevisiae, Yarrowia lipolytica, and Lipomyces starkeyi". Netherlands. https://doi.org/10.1186/s13068-018-1301-y.
@article{osti_1618741,
title = {Expression of an endoglucanase–cellobiohydrolase fusion protein in Saccharomyces cerevisiae, Yarrowia lipolytica, and Lipomyces starkeyi},
author = {Xu, Qi and Alahuhta, Markus and Wei, Hui and Knoshaug, Eric P. and Wang, Wei and Baker, John O. and Vander Wall, Todd and Himmel, Michael E. and Zhang, Min},
abstractNote = {The low secretion levels of cellobiohydrolase I (CBHI) in yeasts are one of the key barriers preventing yeast from directly degrading and utilizing lignocellulose. To overcome this obstacle, we have explored the approach of genetically linking an easily secreted protein to CBHI, with CBHI being the last to be folded. The Trichoderma reesei eg2 (TrEGII) gene was selected as the leading gene due to its previously demonstrated outstanding secretion in yeast. To comprehensively characterize the effects of this fusion protein, we tested this hypothesis in three industrially relevant yeasts: Saccharomyces cerevisiae, Yarrowia lipolytica, and Lipomyces starkeyi. Our initial assays with the L. starkeyi secretome expressing differing TrEGII domains fused to a chimeric Talaromyces emersonii-T. reesei CBHI (TeTrCBHI) showed that the complete TrEGII enzyme, including the glycoside hydrolase (GH) 5 domain is required for increased expression level of the fusion protein when linked to CBHI. We found that this new construct (TrEGII-TeTrCBHI, Fusion 3) had an increased secretion level of at least threefold in L. starkeyi compared to the expression level of the chimeric TeTrCBHI. However, the same improvements were not observed when Fusion 3 construct was expressed in S. cerevisiae and Y. lipolytica. Digestion of pretreated corn stover with the secretomes of Y. lipolytica and L. starkeyi showed that conversion was much better using Y. lipolytica secretomes (50% versus 29%, respectively). In Y. lipolytica, TeTrCBHI performed better than the fusion construct. Furthermore, S. cerevisiae expression of Fusion 3 construct was poor and only minimal activity was observed when acting on the substrate, pNP-cellobiose. No activity was observed for the pNP-lactose substrate. Clearly, this approach is not universally applicable to all yeasts, but works in specific cases. With purified protein and soluble substrates, the exoglucanase activity of the GH7 domain embedded in the Fusion 3 construct in L. starkeyi was significantly higher than that of the GH7 domain in TeTrCBHI expressed alone. It is probable that a higher fraction of fusion construct CBHI is in an active form in Fusion 3 compared to just TeTrCBHI. We conclude that the strategy of leading TeTrCBHI expression with a linked TrEGII module significantly improved the expression of active CBHI in L. starkeyi.},
doi = {10.1186/s13068-018-1301-y},
journal = {Biotechnology for Biofuels},
number = 1,
volume = 11,
place = {Netherlands},
year = {Mon Dec 03 00:00:00 EST 2018},
month = {Mon Dec 03 00:00:00 EST 2018}
}

Journal Article:
Free Publicly Available Full Text
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https://doi.org/10.1186/s13068-018-1301-y

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Works referenced in this record:

Estimating number of transgene copies in transgenic rapeseed by real-time PCR assay withHMG I/Y as an endogenous reference gene
journal, September 2004

  • Weng, Haibo; Pan, Aihu; Yang, Litao
  • Plant Molecular Biology Reporter, Vol. 22, Issue 3
  • DOI: 10.1007/BF02773139

Conferring cellulose-degrading ability to Yarrowia lipolytica to facilitate a consolidated bioprocessing approach
journal, May 2017

  • Guo, Zhong-peng; Duquesne, Sophie; Bozonnet, Sophie
  • Biotechnology for Biofuels, Vol. 10, Issue 1
  • DOI: 10.1186/s13068-017-0819-8

Fungal Protein Production: Design and Production of Chimeric Proteins
journal, October 2011


Dilute-Sulfuric Acid Pretreatment of Corn Stover in Pilot-Scale Reactor: Investigation of Yields, Kinetics, and Enzymatic Digestibilities of Solids
journal, January 2003

  • Schell, Daniel J.; Farmer, Jody; Newman, Millie
  • Applied Biochemistry and Biotechnology, Vol. 105, Issue 1-3, p. 69-86
  • DOI: 10.1385/ABAB:105:1-3:69

Yarrowia lipolytica: A model and a tool to understand the mechanisms implicated in lipid accumulation
journal, June 2009


Lipid production by Lipomyces starkeyi cells in glucose solution without auxiliary nutrients
journal, April 2011


Microbial Cellulose Utilization: Fundamentals and Biotechnology
journal, September 2002

  • Lynd, L. R.; Weimer, P. J.; van Zyl, W. H.
  • Microbiology and Molecular Biology Reviews, Vol. 66, Issue 3, p. 506-577
  • DOI: 10.1128/MMBR.66.3.506-577.2002

The eukaryotic initiation factor (eIF) 5 HEAT domain mediates multifactor assembly and scanning with distinct interfaces to eIF1, eIF2, eIF3, and eIF4G
journal, October 2005

  • Yamamoto, Y.; Singh, C. R.; Marintchev, A.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 45
  • DOI: 10.1073/pnas.0507960102

Engineering towards a complete heterologous cellulase secretome in Yarrowia lipolytica reveals its potential for consolidated bioprocessing
journal, October 2014


The carbohydrate-active enzymes database (CAZy) in 2013
journal, November 2013

  • Lombard, Vincent; Golaconda Ramulu, Hemalatha; Drula, Elodie
  • Nucleic Acids Research, Vol. 42, Issue D1
  • DOI: 10.1093/nar/gkt1178

Protein folding and conformational stress in microbial cells producing recombinant proteins: a host comparative overview
journal, January 2008

  • Gasser, Brigitte; Saloheimo, Markku; Rinas, Ursula
  • Microbial Cell Factories, Vol. 7, Issue 1
  • DOI: 10.1186/1475-2859-7-11

Fungal cellulases
journal, February 1992

  • Wood, Thomas M.
  • Biochemical Society Transactions, Vol. 20, Issue 1
  • DOI: 10.1042/bst0200046

Expression and secretion of fungal endoglucanase II and chimeric cellobiohydrolase I in the oleaginous yeast Lipomyces starkeyi
journal, July 2017


Structure and function of the Clostridium thermocellum cellobiohydrolase A X1-module repeat: enhancement through stabilization of the CbhA complex
journal, February 2012

  • Brunecky, Roman; Alahuhta, Markus; Bomble, Yannick J.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 68, Issue 3
  • DOI: 10.1107/S0907444912001680

Binding modules alter the activity of chimeric cellulases: Effects of biomass pretreatment and enzyme source
journal, July 2010

  • Kim, Tae-Wan; Chokhawala, Harshal A.; Nadler, Dana
  • Biotechnology and Bioengineering, Vol. 107, Issue 4, p. 601-611
  • DOI: 10.1002/bit.22856

1-Aminocyclopropane-1-Carboxylate Oxidase 2 Reduction Effects on Physical and Physiological Responses of Eksotika Papaya
journal, September 2013


Revealing Nature's Cellulase Diversity The Digestion Mechanism of Caldicellulosiruptor bescii CelA
journal, December 2013


Development of a bifunctional xylanase-cellulase chimera with enhanced activity on rice and barley straws using a modular xylanase and an endoglucanase procured from camel rumen metagenome
journal, August 2017

  • Khalili Ghadikolaei, Kamran; Akbari Noghabi, Kambiz; Shahbani Zahiri, Hossein
  • Applied Microbiology and Biotechnology, Vol. 101, Issue 18
  • DOI: 10.1007/s00253-017-8430-2

Identification of oleaginous yeast strains able to accumulate high intracellular lipids when cultivated in alkaline pretreated corn stover
journal, July 2014

  • Sitepu, Irnayuli R.; Jin, Mingjie; Fernandez, J. Enrique
  • Applied Microbiology and Biotechnology, Vol. 98, Issue 17
  • DOI: 10.1007/s00253-014-5944-8

Consolidated bioprocessing of cellulosic biomass: an update
journal, October 2005

  • Lynd, Lee R.; van Zyl, Willem H.; McBride, John E.
  • Current Opinion in Biotechnology, Vol. 16, Issue 5, p. 577-583
  • DOI: 10.1016/j.copbio.2005.08.009

Characterization of Trichoderma reesei cellobiohydrolase Cel7A secreted from Pichia pastoris using two different promoters
journal, January 2000


High level secretion of cellobiohydrolases by Saccharomyces cerevisiae
journal, January 2011

  • Ilmén, Marja; den Haan, Riaan; Brevnova, Elena
  • Biotechnology for Biofuels, Vol. 4, Issue 1
  • DOI: 10.1186/1754-6834-4-30

Phytochrome RNAi enhances major fibre quality and agronomic traits of the cotton Gossypium hirsutum L
journal, January 2014

  • Abdurakhmonov, Ibrokhim Y.; Buriev, Zabardast T.; Saha, Sukumar
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms4062

Oil Production from Yarrowia lipolytica Po1g Using Rice Bran Hydrolysate
journal, January 2012

  • Tsigie, Yeshitila Asteraye; Wang, Chun-Yuan; Kasim, Novy S.
  • Journal of Biomedicine and Biotechnology, Vol. 2012
  • DOI: 10.1155/2012/378384

Expressing accessory proteins in cellulolytic Yarrowia lipolytica to improve the conversion yield of recalcitrant cellulose
journal, December 2017

  • Guo, Zhong-peng; Duquesne, Sophie; Bozonnet, Sophie
  • Biotechnology for Biofuels, Vol. 10, Issue 1
  • DOI: 10.1186/s13068-017-0990-y

Lipid accumulation from glucose and xylose in an engineered, naturally oleaginous strain of Saccharomyces cerevisiae
journal, June 2018

  • Knoshaug, Eric P.; Van Wychen, Stefanie; Singh, Arjun
  • Biofuel Research Journal, Vol. 5, Issue 2
  • DOI: 10.18331/BRJ2018.5.2.3

An optimized transformation protocol for Lipomyces starkeyi
journal, April 2014

  • Calvey, Christopher H.; Willis, Laura B.; Jeffries, Thomas W.
  • Current Genetics, Vol. 60, Issue 3
  • DOI: 10.1007/s00294-014-0427-0

Limited proteolysis of the cellobiohydrolase I from Trichoderma reesei: Separation of functional domains
journal, August 1986


Medium optimization for lipid production through co-fermentation of glucose and xylose by the oleaginous yeastLipomyces starkeyi
journal, May 2008

  • Zhao, Xin; Kong, Xiangli; Hua, Yanyan
  • European Journal of Lipid Science and Technology, Vol. 110, Issue 5
  • DOI: 10.1002/ejlt.200700224

Interplay between Clostridium thermocellum Family 48 and Family 9 Cellulases in Cellulosomal versus Noncellulosomal States
journal, March 2010

  • Vazana, Y.; Morais, S.; Barak, Y.
  • Applied and Environmental Microbiology, Vol. 76, Issue 10
  • DOI: 10.1128/AEM.00009-10

Canola engineered with a microalgal polyketide synthase-like system produces oil enriched in docosahexaenoic acid
journal, July 2016

  • Walsh, Terence A.; Bevan, Scott A.; Gachotte, Daniel J.
  • Nature Biotechnology, Vol. 34, Issue 8
  • DOI: 10.1038/nbt.3585

Use of Label-Free Quantitative Proteomics To Distinguish the Secreted Cellulolytic Systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis
journal, April 2011

  • Lochner, Adriane; Giannone, Richard J.; Rodriguez, Miguel
  • Applied and Environmental Microbiology, Vol. 77, Issue 12
  • DOI: 10.1128/AEM.02811-10

An efficient system for high-level expression and easy purification of authentic recombinant proteins
journal, May 2004

  • Catanzariti, Ann-Maree; Soboleva, Tatiana A.; Jans, David A.
  • Protein Science, Vol. 13, Issue 5
  • DOI: 10.1110/ps.04618904

Expression and High-Level Secretion of Trichoderma reesei Endoglucanase I in Yarrowia lipolytica
journal, January 2000

  • Park, Cheon Seok; Chang, Ching Chuan; Ryu, Dewey D. Y.
  • Applied Biochemistry and Biotechnology, Vol. 87, Issue 1
  • DOI: 10.1385/ABAB:87:1:1

Recent progress in consolidated bioprocessing
journal, June 2012

  • Olson, Daniel G.; McBride, John E.; Joe Shaw, A.
  • Current Opinion in Biotechnology, Vol. 23, Issue 3, p. 396-405
  • DOI: 10.1016/j.copbio.2011.11.026

Trichoderma reesei RUT-C30 - thirty years of strain improvement
journal, October 2011


Generating bifunctional fusion enzymes composed of heat-active endoglucanase (Cel5A) and endoxylanase (XylT)
journal, September 2014

  • Rizk, Mazen; Elleuche, Skander; Antranikian, Garabed
  • Biotechnology Letters, Vol. 37, Issue 1
  • DOI: 10.1007/s10529-014-1654-7

Cellobiohydrolase secretion by yeast: Current state and prospects for improvement
journal, January 2013


Challenges and advances in the heterologous expression of cellulolytic enzymes: a review
journal, October 2014

  • Lambertz, Camilla; Garvey, Megan; Klinger, Johannes
  • Biotechnology for Biofuels, Vol. 7, Issue 1
  • DOI: 10.1186/s13068-014-0135-5

The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei
journal, July 1994


Construction of cellobiose-growing and fermenting Saccharomyces cerevisiae strains
journal, November 2005

  • van Rooyen, Ronél; Hahn-Hägerdal, Bärbel; La Grange, Daniël C.
  • Journal of Biotechnology, Vol. 120, Issue 3
  • DOI: 10.1016/j.jbiotec.2005.06.013

Foreign gene expression in yeast: a review
journal, June 1992

  • Romanos, Michael A.; Scorer, Carol A.; Clare, Jeffrey J.
  • Yeast, Vol. 8, Issue 6
  • DOI: 10.1002/yea.320080602

Design and Production of Active Cellulosome Chimeras: SELECTIVE INCORPORATION OF DOCKERIN-CONTAINING ENZYMES INTO DEFINED FUNCTIONAL COMPLEXES
journal, April 2001

  • Fierobe, Henri-Pierre; Mechaly, Adva; Tardif, Chantal
  • Journal of Biological Chemistry, Vol. 276, Issue 24
  • DOI: 10.1074/jbc.M102082200