Perdeuteration, crystallization, data collection and comparison of five neutron diffraction data sets of complexes of human galectin-3C
Abstract
Galectin-3 is an important protein in molecular signalling events involving carbohydrate recognition, and an understanding of the hydrogen-bonding patterns in the carbohydrate-binding site of its C-terminal domain (galectin-3C) is important for the development of new potent inhibitors. The authors are studying these patterns using neutron crystallography. Here, the production of perdeuterated human galectin-3C and successive improvement in crystal size by the development of a crystal-growth protocol involving feeding of the crystallization drops are described. The larger crystals resulted in improved data quality and reduced data-collection times. Furthermore, protocols for complete removal of the lactose that is necessary for the production of large crystals of apo galectin-3C suitable for neutron diffraction are described. Five data sets have been collected at three different neutron sources from galectin-3C crystals of various volumes. It was possible to merge two of these to generate an almost complete neutron data set for the galectin-3C–lactose complex. As a result, these data sets provide insights into the crystal volumes and data-collection times necessary for the same system at sources with different technologies and data-collection strategies, and these insights are applicable to other systems.
- Authors:
-
- Lund Univ., Lund (Sweden); European Spallation Source ERIC, Lund (Sweden)
- Lund Univ., Lund (Sweden); SASTRA Univ., Tamil Nadu (India)
- Lund Univ., Lund (Sweden)
- Los Alamos National Lab. (LANL), Los Alamos, NM (United States); European Spallation Source ERIC, Lund (Sweden)
- Forschungszentrum Julich GmbH, Garching (Germany)
- Technische Univ. Munchen, Garching (Germany)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Institut Laue-Langevin, Grenoble (France)
- Publication Date:
- Research Org.:
- Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1494022
- Grant/Contract Number:
- AC05-00OR22725
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Acta Crystallographica. Section D. Structural Biology
- Additional Journal Information:
- Journal Volume: 72; Journal Issue: 11; Journal ID: ISSN 2059-7983
- Publisher:
- IUCr
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; neutron crystallography; galectin-3C; perdeuteration; crystallogenesis
Citation Formats
Manzoni, Francesco, Saraboji, Kadhirvel, Sprenger, Janina, Kumar, Rohit, Noresson, Ann -Louise, Nilsson, Ulf J., Leffler, Hakon, Fisher, S. Zoë, Schrader, Tobias E., Ostermann, Andreas, Coates, Leighton, Blakeley, Matthew P., Oksanen, Esko, and Logan, Derek T. Perdeuteration, crystallization, data collection and comparison of five neutron diffraction data sets of complexes of human galectin-3C. United States: N. p., 2016.
Web. doi:10.1107/S2059798316015540.
Manzoni, Francesco, Saraboji, Kadhirvel, Sprenger, Janina, Kumar, Rohit, Noresson, Ann -Louise, Nilsson, Ulf J., Leffler, Hakon, Fisher, S. Zoë, Schrader, Tobias E., Ostermann, Andreas, Coates, Leighton, Blakeley, Matthew P., Oksanen, Esko, & Logan, Derek T. Perdeuteration, crystallization, data collection and comparison of five neutron diffraction data sets of complexes of human galectin-3C. United States. https://doi.org/10.1107/S2059798316015540
Manzoni, Francesco, Saraboji, Kadhirvel, Sprenger, Janina, Kumar, Rohit, Noresson, Ann -Louise, Nilsson, Ulf J., Leffler, Hakon, Fisher, S. Zoë, Schrader, Tobias E., Ostermann, Andreas, Coates, Leighton, Blakeley, Matthew P., Oksanen, Esko, and Logan, Derek T. Fri .
"Perdeuteration, crystallization, data collection and comparison of five neutron diffraction data sets of complexes of human galectin-3C". United States. https://doi.org/10.1107/S2059798316015540. https://www.osti.gov/servlets/purl/1494022.
@article{osti_1494022,
title = {Perdeuteration, crystallization, data collection and comparison of five neutron diffraction data sets of complexes of human galectin-3C},
author = {Manzoni, Francesco and Saraboji, Kadhirvel and Sprenger, Janina and Kumar, Rohit and Noresson, Ann -Louise and Nilsson, Ulf J. and Leffler, Hakon and Fisher, S. Zoë and Schrader, Tobias E. and Ostermann, Andreas and Coates, Leighton and Blakeley, Matthew P. and Oksanen, Esko and Logan, Derek T.},
abstractNote = {Galectin-3 is an important protein in molecular signalling events involving carbohydrate recognition, and an understanding of the hydrogen-bonding patterns in the carbohydrate-binding site of its C-terminal domain (galectin-3C) is important for the development of new potent inhibitors. The authors are studying these patterns using neutron crystallography. Here, the production of perdeuterated human galectin-3C and successive improvement in crystal size by the development of a crystal-growth protocol involving feeding of the crystallization drops are described. The larger crystals resulted in improved data quality and reduced data-collection times. Furthermore, protocols for complete removal of the lactose that is necessary for the production of large crystals of apo galectin-3C suitable for neutron diffraction are described. Five data sets have been collected at three different neutron sources from galectin-3C crystals of various volumes. It was possible to merge two of these to generate an almost complete neutron data set for the galectin-3C–lactose complex. As a result, these data sets provide insights into the crystal volumes and data-collection times necessary for the same system at sources with different technologies and data-collection strategies, and these insights are applicable to other systems.},
doi = {10.1107/S2059798316015540},
journal = {Acta Crystallographica. Section D. Structural Biology},
number = 11,
volume = 72,
place = {United States},
year = {Fri Oct 28 00:00:00 EDT 2016},
month = {Fri Oct 28 00:00:00 EDT 2016}
}
Web of Science
Figures / Tables:
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