Winter hardiness of Miscanthus (II): Genetic mapping for overwintering ability and adaptation traits in three interconnected Miscanthus populations
Abstract
Abstract Miscanthus × giganteus (M×g) is the primary species of Miscanthus for bioenergy feedstock production. The current leading biomass cultivar, M×g ‘1993‐1780’, is insufficiently adapted in temperate regions with cold winters such as USDA hardiness zone 5 (average annual minimum temperature of −28.9 to −23.3°C) or lower. Three interconnected Miscanthus F 1 populations that shared a common parent were planted in a replicated field trial at Urbana, IL (hardiness zone 5b; average annual minimum temperature of −26.1 to −23.3°C) in spring 2011. The winter of 2013–2014 was especially cold in Urbana, with a minimum soil temperature at 10 cm of −6.2°C and a minimum air temperature of −25.3°C, giving us an opportunity to evaluate hardiness on established year‐3 plants. The parent in common to all three populations, M. sinensis ssp. condensatus ‘Cosmopolitan’, is native to maritime southern Japan, and in Urbana, it is winter‐damaged most years. In contrast, the three other parents, M. sacchariflorus ‘Robustus’ (MapA), M. sinensis ‘Silberturm’ (MapB), and M. sinensis ‘November Sunset’ (MapC), are typically winter hardy in Urbana. Nearly all MapA progeny plants survived and grew vigorously in spring 2014, whereas in MapB and MapC, many progeny plants did not survive the winter, and most of the survivors were severely damaged,more »
- Authors:
-
- Department of Crop Sciences University of Illinois at Urbana‐Champaign Urbana Illinois
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1493496
- Alternate Identifier(s):
- OSTI ID: 1493497
- Resource Type:
- Published Article
- Journal Name:
- Global Change Biology. Bioenergy
- Additional Journal Information:
- Journal Name: Global Change Biology. Bioenergy Journal Volume: 11 Journal Issue: 5; Journal ID: ISSN 1757-1693
- Publisher:
- Wiley-Blackwell
- Country of Publication:
- United Kingdom
- Language:
- English
Citation Formats
Dong, Hongxu, Liu, Siyao, Clark, Lindsay V., Sharma, Shailendra, Gifford, Justin M., Juvik, John A., Lipka, Alexander E., and Sacks, Erik J. Winter hardiness of Miscanthus (II): Genetic mapping for overwintering ability and adaptation traits in three interconnected Miscanthus populations. United Kingdom: N. p., 2019.
Web. doi:10.1111/gcbb.12587.
Dong, Hongxu, Liu, Siyao, Clark, Lindsay V., Sharma, Shailendra, Gifford, Justin M., Juvik, John A., Lipka, Alexander E., & Sacks, Erik J. Winter hardiness of Miscanthus (II): Genetic mapping for overwintering ability and adaptation traits in three interconnected Miscanthus populations. United Kingdom. https://doi.org/10.1111/gcbb.12587
Dong, Hongxu, Liu, Siyao, Clark, Lindsay V., Sharma, Shailendra, Gifford, Justin M., Juvik, John A., Lipka, Alexander E., and Sacks, Erik J. Mon .
"Winter hardiness of Miscanthus (II): Genetic mapping for overwintering ability and adaptation traits in three interconnected Miscanthus populations". United Kingdom. https://doi.org/10.1111/gcbb.12587.
@article{osti_1493496,
title = {Winter hardiness of Miscanthus (II): Genetic mapping for overwintering ability and adaptation traits in three interconnected Miscanthus populations},
author = {Dong, Hongxu and Liu, Siyao and Clark, Lindsay V. and Sharma, Shailendra and Gifford, Justin M. and Juvik, John A. and Lipka, Alexander E. and Sacks, Erik J.},
abstractNote = {Abstract Miscanthus × giganteus (M×g) is the primary species of Miscanthus for bioenergy feedstock production. The current leading biomass cultivar, M×g ‘1993‐1780’, is insufficiently adapted in temperate regions with cold winters such as USDA hardiness zone 5 (average annual minimum temperature of −28.9 to −23.3°C) or lower. Three interconnected Miscanthus F 1 populations that shared a common parent were planted in a replicated field trial at Urbana, IL (hardiness zone 5b; average annual minimum temperature of −26.1 to −23.3°C) in spring 2011. The winter of 2013–2014 was especially cold in Urbana, with a minimum soil temperature at 10 cm of −6.2°C and a minimum air temperature of −25.3°C, giving us an opportunity to evaluate hardiness on established year‐3 plants. The parent in common to all three populations, M. sinensis ssp. condensatus ‘Cosmopolitan’, is native to maritime southern Japan, and in Urbana, it is winter‐damaged most years. In contrast, the three other parents, M. sacchariflorus ‘Robustus’ (MapA), M. sinensis ‘Silberturm’ (MapB), and M. sinensis ‘November Sunset’ (MapC), are typically winter hardy in Urbana. Nearly all MapA progeny plants survived and grew vigorously in spring 2014, whereas in MapB and MapC, many progeny plants did not survive the winter, and most of the survivors were severely damaged, with poor vigor. Negative correlations between overwintering ability and spring regrowth date and autumn dormancy date suggested that the genotypes most likely to survive winters were those that emerged early in spring and/or went dormant early in autumn. Using joint‐population analysis, we identified 53 quantitative trait loci (QTLs) for nine adaptation traits, including nine QTLs for overwintering ability and 11 for spring hardiness scores. Many biologically intuitive candidate genes were observed within or near the QTLs detected in this study, suggesting their validity and potential for further study.},
doi = {10.1111/gcbb.12587},
journal = {Global Change Biology. Bioenergy},
number = 5,
volume = 11,
place = {United Kingdom},
year = {Mon Feb 04 00:00:00 EST 2019},
month = {Mon Feb 04 00:00:00 EST 2019}
}
https://doi.org/10.1111/gcbb.12587
Web of Science
Works referenced in this record:
Miscanthus biomass production for energy in Europe and its potential contribution to decreasing fossil fuel carbon emissions
journal, April 2004
- Clifton-brown, John C.; Stampfl, Paul F.; Jones, Michael B.
- Global Change Biology, Vol. 10, Issue 4
Genetic complexity of miscanthus cell wall composition and biomass quality for biofuels
journal, May 2017
- van der Weijde, Tim; Kamei, Claire L. Alvim; Severing, Edouard I.
- BMC Genomics, Vol. 18, Issue 1
Comparative Analysis of Miscanthus and Saccharum Reveals a Shared Whole-Genome Duplication but Different Evolutionary Fates
journal, June 2014
- Kim, Changsoo; Wang, Xiyin; Lee, Tae-Ho
- The Plant Cell, Vol. 26, Issue 6
Feedstocks for Lignocellulosic Biofuels
journal, August 2010
- Somerville, Cris; Youngs, Heather; Taylor, Caroline
- Science, Vol. 329, Issue 5993, p. 790-792
Pleiotropic Roles of Cold Shock Domain Proteins in Plants
journal, January 2012
- Sasaki, Kentaro; Imai, Ryozo
- Frontiers in Plant Science, Vol. 2
Overexpression of Multiple Dehydrin Genes Enhances Tolerance to Freezing Stress in Arabidopsis
journal, March 2004
- Puhakainen, Tuula; Hess, Michael W.; Mäkelä, Pirjo
- Plant Molecular Biology, Vol. 54, Issue 5
Cytogenetic Analysis of Miscanthus‘Giganteus’, an Interspecific Hybrid
journal, December 1993
- Linde-Laursen, Ib
- Hereditas, Vol. 119, Issue 3
A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy
journal, January 2012
- Swaminathan, Kankshita; Chae, Won; Mitros, Therese
- BMC Genomics, Vol. 13, Issue 1
Winter hardiness of Miscanthus (I): Overwintering ability and yield of new Miscanthus × giganteus genotypes in Illinois and Arkansas
journal, January 2019
- Dong, Hongxu; Green, Steven V.; Nishiwaki, Aya
- GCB Bioenergy, Vol. 11, Issue 5
Miscanthus × giganteus productivity: the effects of management in different environments
journal, December 2011
- Maughan, Matt; Bollero, Germán; Lee, D. K.
- GCB Bioenergy, Vol. 4, Issue 3
DFL1, an auxin-responsive GH3 gene homologue, negatively regulates shoot cell elongation and lateral root formation, and positively regulates the light response of hypocotyl length: DFL1 as a negative regulator of the auxin signal
journal, January 2001
- Nakazawa, Miki; Yabe, Naoto; Ichikawa, Takanari
- The Plant Journal, Vol. 25, Issue 2
Genetic Analysis of Visually Scored Orange Kernel Color in Maize
journal, January 2013
- Chandler, Kristin; Lipka, Alexander E.; Owens, Brenda F.
- Crop Science, Vol. 53, Issue 1
Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers.
journal, August 1994
- Grattapaglia, D.; Sederoff, R.
- Genetics, Vol. 137, Issue 4
Lipid transfer protein 3 as a target of MYB96 mediates freezing and drought stress in Arabidopsis
journal, February 2013
- Guo, Lin; Yang, Haibian; Zhang, Xiaoyan
- Journal of Experimental Botany, Vol. 64, Issue 6
A footprint of past climate change on the diversity and population structure of Miscanthus sinensis
journal, June 2014
- Clark, Lindsay V.; Brummer, Joe E.; Głowacka, Katarzyna
- Annals of Botany, Vol. 114, Issue 1
Screening Miscanthus genotypes in field trials to optimise biomass yield and quality in Southern Germany
journal, March 2002
- Clifton-Brown, J. C.; Lewandowski, I.
- European Journal of Agronomy, Vol. 16, Issue 2
Analysis of osmotin, a PR protein as metabolic modulator in plants
journal, January 2011
- Abdin, Malik Zainul; Kiran, Usha; Alam, Afshar
- Bioinformation, Vol. 5, Issue 8
Variability and adaptability of Miscanthus species evaluated for energy crop domestication: MISCANTHUS SPECIES FOR DOMESTICATION
journal, May 2011
- Yan, Juan; Chen, Wenli; Luo, Fan
- GCB Bioenergy, Vol. 4, Issue 1
Physiological and growth responses to water deficit in the bioenergy crop Miscanthus x giganteus
journal, January 2013
- Ings, Jennifer; Mur, Luis A. J.; Robson, Paul R. H.
- Frontiers in Plant Science, Vol. 4
Osmotin induces cold protection in olive trees by affecting programmed cell death and cytoskeleton organization
journal, November 2006
- D’Angeli, S.; Altamura, M. M.
- Planta, Vol. 225, Issue 5
Joint QTL Linkage Mapping for Multiple-Cross Mating Design Sharing One Common Parent
journal, March 2011
- Li, Huihui; Bradbury, Peter; Ersoz, Elhan
- PLoS ONE, Vol. 6, Issue 3
Meeting US biofuel goals with less land: the potential of Miscanthus
journal, September 2008
- Heaton, Emily A.; Dohleman, Frank G.; Long, Stephen P.
- Global Change Biology, Vol. 14, Issue 9
The SLO1 PPR protein is required for RNA editing at multiple sites with similar upstream sequences in Arabidopsis mitochondria: SLO1 and mitochondrial RNA editing
journal, May 2010
- Sung, Tzu-Ying; Tseng, Ching-Chih; Hsieh, Ming-Hsiun
- The Plant Journal, Vol. 63, Issue 3
Genetic mapping of biomass yield in three interconnected Miscanthus populations
journal, August 2017
- Dong, Hongxu; Liu, Siyao; Clark, Lindsay V.
- GCB Bioenergy, Vol. 10, Issue 3
The impact of soil salinity on the yield, composition and physiology of the bioenergy grass Miscanthus × giganteus
journal, April 2016
- Stavridou, Evangelia; Hastings, Astley; Webster, Richard J.
- GCB Bioenergy, Vol. 9, Issue 1
High-density genetic map of Miscanthus sinensis reveals inheritance of zebra stripe
journal, July 2015
- Liu, Siyao; Clark, Lindsay V.; Swaminathan, Kankshita
- GCB Bioenergy, Vol. 8, Issue 3
The Genetic Architecture of Maize Flowering Time
journal, August 2009
- Buckler, E. S.; Holland, J. B.; Bradbury, P. J.
- Science, Vol. 325, Issue 5941, p. 714-718
Candidate gene association mapping for winter survival and spring regrowth in perennial ryegrass
journal, June 2015
- Yu, Xiaoqing; Pijut, Paula M.; Byrne, Stephen
- Plant Science, Vol. 235
Genetic diversity in agronomic traits associated with the biomass production of Miscanthus species collected in Northeast Asia
journal, July 2014
- Lim, Soo-Hyun; Yook, Min Jung; Kim, Jin-Won
- Plant Genetic Resources, Vol. 12, Issue S1
Tolerance of Miscanthus×giganteus to salinity depends on initial weight of rhizomes as well as high accumulation of potassium and proline in leaves
journal, January 2014
- Płażek, Agnieszka; Dubert, Franciszek; Kościelniak, Janusz
- Industrial Crops and Products, Vol. 52
Genotypic variation in cold tolerance influences the yield of Miscanthus
journal, December 2006
- Farrell, A. D.; Clifton-Brown, J. C.; Lewandowski, I.
- Annals of Applied Biology, Vol. 149, Issue 3
Miscanthus Establishment and Overwintering in the Midwest USA: A Regional Modeling Study of Crop Residue Management on Critical Minimum Soil Temperatures
journal, July 2013
- Kucharik, Christopher J.; VanLoocke, Andy; Lenters, John D.
- PLoS ONE, Vol. 8, Issue 7
Identification of a Novel Chloroplast Protein AtNYE1 Regulating Chlorophyll Degradation during Leaf Senescence in Arabidopsis
journal, April 2007
- Ren, Guodong; An, Kun; Liao, Yang
- Plant Physiology, Vol. 144, Issue 3
The Arabidopsis RGA Gene Encodes a Transcriptional Regulator Repressing the Gibberellin Signal Transduction Pathway
journal, February 1998
- Silverstone, Aron L.; Ciampaglio, Charles N.; Sun, Tai-ping
- The Plant Cell, Vol. 10, Issue 2
Nomenclature of Miscanthus xgiganteus (Poaceae)
journal, January 2001
- Hodkinson, Trevor R.; Renvoize, Steve
- Kew Bulletin, Vol. 56, Issue 3
TASSEL: software for association mapping of complex traits in diverse samples
journal, June 2007
- Bradbury, P. J.; Zhang, Z.; Kroon, D. E.
- Bioinformatics, Vol. 23, Issue 19
Identification of genes associated with cold acclimation in perennial ryegrass
journal, September 2009
- Zhang, Chunzhen; Fei, Shui-zhang; Warnke, Scott
- Journal of Plant Physiology, Vol. 166, Issue 13
How low can you go?—Rhizome and shoot frost tolerance in miscanthus germplasm
journal, October 2016
- Fonteyne, Simon; Muylle, Hilde; De Swaef, Tom
- Industrial Crops and Products, Vol. 89
Dehydrins (LTI29, LTI30, COR47) from Arabidopsis thaliana expressed in Escherichia coli protect Thylakoid membrane during freezing
journal, January 2013
- Bozovic, Vladan; Svensson, Jan; Schmitt, Jürgen
- Journal of the Serbian Chemical Society, Vol. 78, Issue 8
A bHLH-Type Transcription Factor, ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR/JA-ASSOCIATED MYC2-LIKE1, Acts as a Repressor to Negatively Regulate Jasmonate Signaling in Arabidopsis
journal, May 2013
- Nakata, Masaru; Mitsuda, Nobutaka; Herde, Marco
- The Plant Cell, Vol. 25, Issue 5
Genetic variation in Miscanthus × giganteus and the importance of estimating genetic distance thresholds for differentiating clones
journal, June 2014
- Głowacka, Katarzyna; Clark, Lindsay V.; Adhikari, Shivani
- GCB Bioenergy, Vol. 7, Issue 2
Mapping the genome of Miscanthus sinensis for QTL associated with biomass productivity
journal, June 2014
- Gifford, Justin M.; Chae, Won Byoung; Swaminathan, Kankshita
- GCB Bioenergy, Vol. 7, Issue 4
Dry matter partitioning and quality of Miscanthus, Panicum, and Saccharum genotypes in Arkansas, USA
journal, April 2009
- Burner, David M.; Tew, Thomas L.; Harvey, Jonathan J.
- Biomass and Bioenergy, Vol. 33, Issue 4
Performance of 15 Genotypes at Five Sites in Europe
journal, January 2001
- Clifton-Brown, John C.; Lewandowski, Iris; Andersson, Bengt
- Agronomy Journal, Vol. 93, Issue 5
A quantitative review comparing the yields of two candidate C4 perennial biomass crops in relation to nitrogen, temperature and water
journal, July 2004
- Heaton, E.
- Biomass and Bioenergy, Vol. 27, Issue 1
APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs
journal, May 2013
- Licausi, Francesco; Ohme-Takagi, Masaru; Perata, Pierdomenico
- New Phytologist, Vol. 199, Issue 3
Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice
journal, January 2006
- Nakano, Toshitsugu; Suzuki, Kaoru; Fujimura, Tatsuhito
- Plant Physiology, Vol. 140, Issue 2
Ethylene Response Factors: A Key Regulatory Hub in Hormone and Stress Signaling
journal, June 2015
- Müller, Maren; Munné-Bosch, Sergi
- Plant Physiology, Vol. 169, Issue 1
Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. sinensis, and diversity centred around the Yellow Sea
journal, September 2018
- Clark, Lindsay V.; Jin, Xiaoli; Petersen, Karen Koefoed
- Annals of Botany, Vol. 124, Issue 4
A specific group of genes respond to cold dehydration stress in cut Alstroemeria flowers whereas ambient dehydration stress accelerates developmental senescence expression patterns
journal, May 2010
- Wagstaff, Carol; Bramke, Irene; Breeze, Emily
- Journal of Experimental Botany, Vol. 61, Issue 11
Connected populations for detecting quantitative trait loci and testing for epistasis: an application in maize
journal, May 2006
- Blanc, G.; Charcosset, A.; Mangin, B.
- Theoretical and Applied Genetics, Vol. 113, Issue 2
Genome Wide Transcriptional Profile Analysis of Vitis amurensis and Vitis vinifera in Response to Cold Stress
journal, March 2013
- Xin, Haiping; Zhu, Wei; Wang, Lina
- PLoS ONE, Vol. 8, Issue 3
Genetic structure of Miscanthus sinensis and Miscanthus sacchariflorus in Japan indicates a gradient of bidirectional but asymmetric introgression
journal, January 2015
- Clark, Lindsay V.; Stewart, J. Ryan; Nishiwaki, Aya
- Journal of Experimental Botany, Vol. 66, Issue 14
The Gene Pool of Miscanthus Species and Its Improvement
book, July 2012
- Sacks, Erik J.; Juvik, John A.; Lin, Qi
- Genomics of the Saccharinae
Combined Analyses of Data From Quantitative Trait Loci Mapping Studies: Chromosome 4 Effects on Porcine Growth and Fatness
journal, July 2000
- Walling, Grant A.; Visscher, Peter M.; Andersson, Leif
- Genetics, Vol. 155, Issue 3
SSR-based genetic maps of Miscanthus sinensis and M. sacchariflorus, and their comparison to sorghum
journal, January 2012
- Kim, Changsoo; Zhang, Dong; Auckland, Susan A.
- Theoretical and Applied Genetics, Vol. 124, Issue 7
Verification of QTL for Grain Starch Content and Its Genetic Correlation with Oil Content Using Two Connected RIL Populations in High-Oil Maize
journal, January 2013
- Yang, Guohu; Dong, Yongbin; Li, Yuling
- PLoS ONE, Vol. 8, Issue 1
High Resolution Genetic Mapping by Genome Sequencing Reveals Genome Duplication and Tetraploid Genetic Structure of the Diploid Miscanthus sinensis
journal, March 2012
- Ma, Xue-Feng; Jensen, Elaine; Alexandrov, Nickolai
- PLoS ONE, Vol. 7, Issue 3
Empirical threshold values for quantitative trait mapping.
journal, November 1994
- Churchill, G. A.; Doerge, R. W.
- Genetics, Vol. 138, Issue 3
Mapping QTL Controlling Southern Leaf Blight Resistance by Joint Analysis of Three Related Recombinant Inbred Line Populations
journal, January 2011
- Negeri, Adisu T.; Coles, Nathan D.; Holland, James B.
- Crop Science, Vol. 51, Issue 4
Winter cold-tolerance thresholds in field-grown Miscanthus hybrid rhizomes
journal, March 2015
- Peixoto, Murilo de Melo; Friesen, Patrick Calvin; Sage, Rowan F.
- Journal of Experimental Botany, Vol. 66, Issue 14
Preliminary genetic linkage map of Miscanthus sinensis with RAPD markers
journal, November 2002
- Atienza, S.; Satovic, Z.; Petersen, K.
- Theoretical and Applied Genetics, Vol. 105, Issue 6
Ecological characteristics and in situ genetic associations for yield-component traits of wild Miscanthus from eastern Russia
journal, July 2016
- Clark, Lindsay V.; Dzyubenko, Elena; Dzyubenko, Nikolay
- Annals of Botany, Vol. 118, Issue 5
Cold-Tolerance of Seedlings and Effects of Spring and Autumn Frosts on Mature Clonally Replicated Cultivars
journal, January 2015
- Kaiser, Christopher M.; Sacks, Erik J.
- Crop Science, Vol. 55, Issue 5
Overwintering problems of newly established Miscanthus plantations can be overcome by identifying genotypes with improved rhizome cold tolerance: RESEARCH Miscanthus rhizome frost tolerance
journal, November 2000
- Clifton-Brown, J. C.; Lewandowski, I.
- New Phytologist, Vol. 148, Issue 2
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray: Expression profiling under abiotic stresses
journal, August 2002
- Seki, Motoaki; Narusaka, Mari; Ishida, Junko
- The Plant Journal, Vol. 31, Issue 3