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Title: Spatially-resolved fluorescence-detected two-dimensional electronic spectroscopy probes varying excitonic structure in photosynthetic bacteria

Abstract

Abstract Conventional implementations of two-dimensional electronic spectroscopy typically spatially average over ~10 10 chromophores spread over ~10 4 micron square area, limiting their ability to characterize spatially heterogeneous samples. Here we present a variation of two-dimensional electronic spectroscopy that is capable of mapping spatially varying differences in excitonic structure, with sensitivity orders of magnitude better than conventional spatially-averaged electronic spectroscopies. The approach performs fluorescence-detection-based fully collinear two-dimensional electronic spectroscopy in a microscope, combining femtosecond time-resolution, sub-micron spatial resolution, and the sensitivity of fluorescence detection. We demonstrate the approach on a mixture of photosynthetic bacteria that are known to exhibit variations in electronic structure with growth conditions. Spatial variations in the constitution of mixed bacterial colonies manifests as spatially varying peak intensities in the measured two-dimensional contour maps, which exhibit distinct diagonal and cross-peaks that reflect differences in the excitonic structure of the bacterial proteins.

Authors:
ORCiD logo; ; ; ORCiD logo; ORCiD logo; ORCiD logo
Publication Date:
Research Org.:
Energy Frontier Research Centers (EFRC) (United States). Photosynthetic Antenna Research Center (PARC); Washington Univ., St. Louis, MO (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1619899
Alternate Identifier(s):
OSTI ID: 1483411
Grant/Contract Number:  
SC 0001035; SC0001035
Resource Type:
Published Article
Journal Name:
Nature Communications
Additional Journal Information:
Journal Name: Nature Communications Journal Volume: 9 Journal Issue: 1; Journal ID: ISSN 2041-1723
Publisher:
Nature Publishing Group
Country of Publication:
United Kingdom
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Tiwari, Vivek, Matutes, Yassel Acosta, Gardiner, Alastair T., Jansen, Thomas L. C., Cogdell, Richard J., and Ogilvie, Jennifer P. Spatially-resolved fluorescence-detected two-dimensional electronic spectroscopy probes varying excitonic structure in photosynthetic bacteria. United Kingdom: N. p., 2018. Web. doi:10.1038/s41467-018-06619-x.
Tiwari, Vivek, Matutes, Yassel Acosta, Gardiner, Alastair T., Jansen, Thomas L. C., Cogdell, Richard J., & Ogilvie, Jennifer P. Spatially-resolved fluorescence-detected two-dimensional electronic spectroscopy probes varying excitonic structure in photosynthetic bacteria. United Kingdom. https://doi.org/10.1038/s41467-018-06619-x
Tiwari, Vivek, Matutes, Yassel Acosta, Gardiner, Alastair T., Jansen, Thomas L. C., Cogdell, Richard J., and Ogilvie, Jennifer P. Thu . "Spatially-resolved fluorescence-detected two-dimensional electronic spectroscopy probes varying excitonic structure in photosynthetic bacteria". United Kingdom. https://doi.org/10.1038/s41467-018-06619-x.
@article{osti_1619899,
title = {Spatially-resolved fluorescence-detected two-dimensional electronic spectroscopy probes varying excitonic structure in photosynthetic bacteria},
author = {Tiwari, Vivek and Matutes, Yassel Acosta and Gardiner, Alastair T. and Jansen, Thomas L. C. and Cogdell, Richard J. and Ogilvie, Jennifer P.},
abstractNote = {Abstract Conventional implementations of two-dimensional electronic spectroscopy typically spatially average over ~10 10 chromophores spread over ~10 4 micron square area, limiting their ability to characterize spatially heterogeneous samples. Here we present a variation of two-dimensional electronic spectroscopy that is capable of mapping spatially varying differences in excitonic structure, with sensitivity orders of magnitude better than conventional spatially-averaged electronic spectroscopies. The approach performs fluorescence-detection-based fully collinear two-dimensional electronic spectroscopy in a microscope, combining femtosecond time-resolution, sub-micron spatial resolution, and the sensitivity of fluorescence detection. We demonstrate the approach on a mixture of photosynthetic bacteria that are known to exhibit variations in electronic structure with growth conditions. Spatial variations in the constitution of mixed bacterial colonies manifests as spatially varying peak intensities in the measured two-dimensional contour maps, which exhibit distinct diagonal and cross-peaks that reflect differences in the excitonic structure of the bacterial proteins.},
doi = {10.1038/s41467-018-06619-x},
journal = {Nature Communications},
number = 1,
volume = 9,
place = {United Kingdom},
year = {Thu Oct 11 00:00:00 EDT 2018},
month = {Thu Oct 11 00:00:00 EDT 2018}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1038/s41467-018-06619-x

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Cited by: 63 works
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Works referenced in this record:

Exciton Structure and Energy Transfer in the Fenna–Matthews–Olson Complex
journal, April 2016

  • Thyrhaug, Erling; Žídek, Karel; Dostál, Jakub
  • The Journal of Physical Chemistry Letters, Vol. 7, Issue 9
  • DOI: 10.1021/acs.jpclett.6b00534

Inducing coherent quantum dot interactions
journal, February 2018


Antennas for light
journal, February 2011


Real-time observation of multiexcitonic states in ultrafast singlet fission using coherent 2D electronic spectroscopy
journal, October 2015

  • Bakulin, Artem A.; Morgan, Sarah E.; Kehoe, Tom B.
  • Nature Chemistry, Vol. 8, Issue 1
  • DOI: 10.1038/nchem.2371

Plasmonic nanofocused four-wave mixing for femtosecond near-field imaging
journal, February 2016

  • Kravtsov, Vasily; Ulbricht, Ronald; Atkin, Joanna M.
  • Nature Nanotechnology, Vol. 11, Issue 5
  • DOI: 10.1038/nnano.2015.336

Progress, Challenges, and Opportunities in Two-Dimensional Materials Beyond Graphene
journal, March 2013

  • Butler, Sheneve Z.; Hollen, Shawna M.; Cao, Linyou
  • ACS Nano, Vol. 7, Issue 4, p. 2898-2926
  • DOI: 10.1021/nn400280c

Direct Observation of Ultrafast Exciton Dissociation in Lead Iodide Perovskite by 2D Electronic Spectroscopy
journal, December 2017


Competitive events in fifth order time resolved coherent Raman scattering: Direct versus sequential processes
journal, March 1998

  • Ulness, Darin J.; Kirkwood, Jason C.; Albrecht, A. C.
  • The Journal of Chemical Physics, Vol. 108, Issue 10
  • DOI: 10.1063/1.475837

Conformation of self-assembled porphyrin dimers in liposome vesicles by phase-modulation 2D fluorescence spectroscopy
journal, September 2011

  • Lott, G. A.; Perdomo-Ortiz, A.; Utterback, J. K.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 40
  • DOI: 10.1073/pnas.1017308108

Vibronic coherence in oxygenic photosynthesis
journal, July 2014

  • Fuller, Franklin D.; Pan, Jie; Gelzinis, Andrius
  • Nature Chemistry, Vol. 6, Issue 8
  • DOI: 10.1038/nchem.2005

Using coherence to enhance function in chemical and biophysical systems
journal, March 2017

  • Scholes, Gregory D.; Fleming, Graham R.; Chen, Lin X.
  • Nature, Vol. 543, Issue 7647
  • DOI: 10.1038/nature21425

Fifth-order two-dimensional Raman spectra of CS2 are dominated by third-order cascades
journal, August 1999

  • Blank, David A.; Kaufman, Laura J.; Fleming, Graham R.
  • The Journal of Chemical Physics, Vol. 111, Issue 7
  • DOI: 10.1063/1.479591

T WO -D IMENSIONAL F EMTOSECOND S PECTROSCOPY
journal, October 2003


Bringing Far-Field Subdiffraction Optical Imaging to Electronically Coupled Optoelectronic Molecular Materials Using Their Endogenous Chromophores
journal, July 2015

  • Penwell, Samuel B.; Ginsberg, Lucas D. S.; Ginsberg, Naomi S.
  • The Journal of Physical Chemistry Letters, Vol. 6, Issue 14
  • DOI: 10.1021/acs.jpclett.5b01200

Origin of Reversible Photoinduced Phase Separation in Hybrid Perovskites
journal, January 2017


Morphological Control for High Performance, Solution-Processed Planar Heterojunction Perovskite Solar Cells
journal, September 2013

  • Eperon, Giles E.; Burlakov, Victor M.; Docampo, Pablo
  • Advanced Functional Materials, Vol. 24, Issue 1, p. 151-157
  • DOI: 10.1002/adfm.201302090

In situ mapping of the energy flow through the entire photosynthetic apparatus
journal, May 2016

  • Dostál, Jakub; Pšenčík, Jakub; Zigmantas, Donatas
  • Nature Chemistry, Vol. 8, Issue 7
  • DOI: 10.1038/nchem.2525

Experimental Implementations of Two-Dimensional Fourier Transform Electronic Spectroscopy
journal, April 2015


Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems
journal, April 2007

  • Engel, Gregory S.; Calhoun, Tessa R.; Read, Elizabeth L.
  • Nature, Vol. 446, Issue 7137
  • DOI: 10.1038/nature05678

Two‐dimensional spectroscopy. Application to nuclear magnetic resonance
journal, March 1976

  • Aue, W. P.; Bartholdi, E.; Ernst, R. R.
  • The Journal of Chemical Physics, Vol. 64, Issue 5
  • DOI: 10.1063/1.432450

Mapping the ultrafast flow of harvested solar energy in living photosynthetic cells
journal, October 2017


Characterisation of a pucBA deletion mutant from Rhodopseudomonas palustris lacking all but the pucBAd genes
journal, May 2017

  • Southall, June; Henry, Sarah L.; Gardiner, Alastair T.
  • Photosynthesis Research, Vol. 135, Issue 1-3
  • DOI: 10.1007/s11120-017-0386-7

Quantum coherence spectroscopy reveals complex dynamics in bacterial light-harvesting complex 2 (LH2)
journal, January 2012

  • Harel, E.; Engel, G. S.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 3
  • DOI: 10.1073/pnas.1110312109

Methods of single-molecule fluorescence spectroscopy and microscopy
journal, August 2003

  • Moerner, W. E.; Fromm, David P.
  • Review of Scientific Instruments, Vol. 74, Issue 8
  • DOI: 10.1063/1.1589587

Spatially Resolved Two-Dimensional Infrared Spectroscopy via Wide-Field Microscopy
journal, June 2016


Fluorescence-detected two-dimensional electronic coherence spectroscopy by acousto-optic phase modulation
journal, December 2007

  • Tekavec, Patrick F.; Lott, Geoffrey A.; Marcus, Andrew H.
  • The Journal of Chemical Physics, Vol. 127, Issue 21
  • DOI: 10.1063/1.2800560

High-efficiency solution-processed perovskite solar cells with millimeter-scale grains
journal, January 2015


Femtosecond Photofragment Spectroscopy: The Reaction ICN → CN + I
journal, November 1985

  • Scherer, N. F.; Knee, J. L.; Smith, D. D.
  • The Journal of Physical Chemistry, Vol. 89, Issue 24
  • DOI: 10.1021/j100270a001

Direct observation of ultrafast long-range charge separation at polymer–fullerene heterojunctions
journal, July 2014

  • Provencher, Françoise; Bérubé, Nicolas; Parker, Anthony W.
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms5288

Discerning Variable Extents of Interdomain Orientational and Structural Heterogeneity in Solution-Cast Polycrystalline Organic Semiconducting Thin Films
journal, July 2015

  • Wong, Cathy Y.; Folie, Brendan D.; Cotts, Benjamin L.
  • The Journal of Physical Chemistry Letters, Vol. 6, Issue 16
  • DOI: 10.1021/acs.jpclett.5b01416

Vibronic Enhancement of Exciton Sizes and Energy Transport in Photosynthetic Complexes
journal, February 2011

  • Womick, Jordan M.; Moran, Andrew M.
  • The Journal of Physical Chemistry B, Vol. 115, Issue 6
  • DOI: 10.1021/jp106713q

Spatial and temporal imaging of long-range charge transport in perovskite thin films by ultrafast microscopy
journal, June 2015

  • Guo, Zhi; Manser, Joseph S.; Wan, Yan
  • Nature Communications, Vol. 6, Issue 1
  • DOI: 10.1038/ncomms8471

Spectroscopic studies of two spectral variants of light-harvesting complex 2 (LH2) from the photosynthetic purple sulfur bacterium Allochromatium vinosum
journal, September 2012

  • Niedzwiedzki, Dariusz M.; Bina, David; Picken, Nichola
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1817, Issue 9
  • DOI: 10.1016/j.bbabio.2012.05.009

The first step in vision: femtosecond isomerization of rhodopsin
journal, October 1991


Low Light Adaptation: Energy Transfer Processes in Different Types of Light Harvesting Complexes from Rhodopseudomonas palustris
journal, December 2009

  • Moulisová, Vladimíra; Luer, Larry; Hoseinkhani, Sajjad
  • Biophysical Journal, Vol. 97, Issue 11
  • DOI: 10.1016/j.bpj.2009.09.023

Pump-Probe Imaging Differentiates Melanoma from Melanocytic Nevi
journal, February 2011


The role of spin in the kinetic control of recombination in organic photovoltaics
journal, August 2013

  • Rao, Akshay; Chow, Philip C. Y.; Gélinas, Simon
  • Nature, Vol. 500, Issue 7463
  • DOI: 10.1038/nature12339

Vibronic origin of long-lived coherence in an artificial molecular light harvester
journal, July 2015

  • Lim, James; Paleček, David; Caycedo-Soler, Felipe
  • Nature Communications, Vol. 6, Issue 1
  • DOI: 10.1038/ncomms8755

Imaging Electronic Trap States in Perovskite Thin Films with Combined Fluorescence and Femtosecond Transient Absorption Microscopy
journal, April 2016

  • Simpson, Mary Jane; Doughty, Benjamin; Yang, Bin
  • The Journal of Physical Chemistry Letters, Vol. 7, Issue 9
  • DOI: 10.1021/acs.jpclett.6b00715

Ultrafast optical switching properties of single-wall carbon nanotube polymer composites at 1.55 μm
journal, August 2002

  • Chen, Y. -C.; Raravikar, N. R.; Schadler, L. S.
  • Applied Physics Letters, Vol. 81, Issue 6
  • DOI: 10.1063/1.1498007

Identification and characterization of diverse coherences in the Fenna–Matthews–Olson complex
journal, May 2018

  • Thyrhaug, Erling; Tempelaar, Roel; Alcocer, Marcelo J. P.
  • Nature Chemistry, Vol. 10, Issue 7
  • DOI: 10.1038/s41557-018-0060-5

Ultrafast carrier thermalization in lead iodide perovskite probed with two-dimensional electronic spectroscopy
journal, August 2017

  • Richter, Johannes M.; Branchi, Federico; Valduga de Almeida Camargo, Franco
  • Nature Communications, Vol. 8, Issue 1
  • DOI: 10.1038/s41467-017-00546-z

Quantum coherence as a witness of vibronically hot energy transfer in bacterial reaction center
journal, September 2017

  • Paleček, David; Edlund, Petra; Westenhoff, Sebastian
  • Science Advances, Vol. 3, Issue 9
  • DOI: 10.1126/sciadv.1603141

Quantum Coherent Energy Transfer over Varying Pathways in Single Light-Harvesting Complexes
journal, June 2013


Two-dimensional fluorescence-detected coherent spectroscopy with absolute phasing by confocal imaging of a dynamic grating and 27-step phase-cycling
journal, May 2014

  • De, Arijit K.; Monahan, Daniele; Dawlaty, Jahan M.
  • The Journal of Chemical Physics, Vol. 140, Issue 19
  • DOI: 10.1063/1.4874697

Chromatic Adaptation of Photosynthetic Membranes
journal, July 2005


Ultrafast Optical-Pump Terahertz-Probe Spectroscopy of the Carrier Relaxation and Recombination Dynamics in Epitaxial Graphene
journal, December 2008

  • George, Paul A.; Strait, Jared; Dawlaty, Jahan
  • Nano Letters, Vol. 8, Issue 12
  • DOI: 10.1021/nl8019399

Phase sensitive detection as a means to recover signals buried in noise
journal, August 1975


Seeing a single molecule vibrate through time-resolved coherent anti-Stokes Raman scattering
journal, July 2014

  • Yampolsky, Steven; Fishman, Dmitry A.; Dey, Shirshendu
  • Nature Photonics, Vol. 8, Issue 8
  • DOI: 10.1038/nphoton.2014.143

Sub-10 fs Time-Resolved Vibronic Optical Microscopy
journal, November 2016

  • Schnedermann, Christoph; Lim, Jong Min; Wende, Torsten
  • The Journal of Physical Chemistry Letters, Vol. 7, Issue 23
  • DOI: 10.1021/acs.jpclett.6b02387

Dark States in the Light-Harvesting complex 2 Revealed by Two-dimensional Electronic Spectroscopy
journal, February 2016

  • Ferretti, Marco; Hendrikx, Ruud; Romero, Elisabet
  • Scientific Reports, Vol. 6, Issue 1
  • DOI: 10.1038/srep20834

Domain Compositions and Fullerene Aggregation Govern Charge Photogeneration in Polymer/Fullerene Solar Cells
journal, March 2014

  • Kesava, Sameer Vajjala; Fei, Zhuping; Rimshaw, Adam D.
  • Advanced Energy Materials, Vol. 4, Issue 11
  • DOI: 10.1002/aenm.201400116

Propagation, beam geometry, and detection distortions of peak shapes in two-dimensional Fourier transform spectra
journal, January 2007

  • Yetzbacher, Michael K.; Belabas, Nadia; Kitney, Katherine A.
  • The Journal of Chemical Physics, Vol. 126, Issue 4
  • DOI: 10.1063/1.2426337

Vibronic Enhancement of Algae Light Harvesting
journal, December 2016


Optical two-dimensional Fourier transform spectroscopy with active interferometric stabilization
journal, January 2005

  • Zhang, Tianhao; Borca, Camelia N.; Li, Xiaoqin
  • Optics Express, Vol. 13, Issue 19
  • DOI: 10.1364/OPEX.13.007432

Fourier Transform Fluorescence-Encoded Infrared Spectroscopy
journal, January 2018

  • Mastron, Joseph N.; Tokmakoff, Andrei
  • The Journal of Physical Chemistry A, Vol. 122, Issue 2
  • DOI: 10.1021/acs.jpca.7b10305

Major signal increase in fluorescence microscopy through dark-state relaxation
journal, December 2006

  • Donnert, Gerald; Eggeling, Christian; Hell, Stefan W.
  • Nature Methods, Vol. 4, Issue 1, p. 81-86
  • DOI: 10.1038/nmeth986

Two-Color Nonlinear Spectroscopy for the Rapid Acquisition of Coherent Dynamics
journal, June 2015

  • Senlik, S. Seckin; Policht, Veronica R.; Ogilvie, Jennifer P.
  • The Journal of Physical Chemistry Letters, Vol. 6, Issue 13
  • DOI: 10.1021/acs.jpclett.5b00861