Molybdenum‐ and tungsten‐containing formate dehydrogenases and formylmethanofuran dehydrogenases: Structure, mechanism, and cofactor insertion
Abstract
Abstract An overview is provided of the molybdenum‐ and tungsten‐containing enzymes that catalyze the interconversion of formate and CO 2 , focusing on common structural and mechanistic themes, as well as a consideration of the manner in which the mature Mo‐ or W‐containing cofactor is inserted into apoprotein.
- Authors:
-
- Department of Biochemistry University of California Riverside
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1480356
- Resource Type:
- Publisher's Accepted Manuscript
- Journal Name:
- Protein Science
- Additional Journal Information:
- Journal Name: Protein Science Journal Volume: 28 Journal Issue: 1; Journal ID: ISSN 0961-8368
- Publisher:
- Wiley Blackwell (John Wiley & Sons)
- Country of Publication:
- United Kingdom
- Language:
- English
Citation Formats
Niks, Dimitri, and Hille, Russ. Molybdenum‐ and tungsten‐containing formate dehydrogenases and formylmethanofuran dehydrogenases: Structure, mechanism, and cofactor insertion. United Kingdom: N. p., 2018.
Web. doi:10.1002/pro.3498.
Niks, Dimitri, & Hille, Russ. Molybdenum‐ and tungsten‐containing formate dehydrogenases and formylmethanofuran dehydrogenases: Structure, mechanism, and cofactor insertion. United Kingdom. https://doi.org/10.1002/pro.3498
Niks, Dimitri, and Hille, Russ. Wed .
"Molybdenum‐ and tungsten‐containing formate dehydrogenases and formylmethanofuran dehydrogenases: Structure, mechanism, and cofactor insertion". United Kingdom. https://doi.org/10.1002/pro.3498.
@article{osti_1480356,
title = {Molybdenum‐ and tungsten‐containing formate dehydrogenases and formylmethanofuran dehydrogenases: Structure, mechanism, and cofactor insertion},
author = {Niks, Dimitri and Hille, Russ},
abstractNote = {Abstract An overview is provided of the molybdenum‐ and tungsten‐containing enzymes that catalyze the interconversion of formate and CO 2 , focusing on common structural and mechanistic themes, as well as a consideration of the manner in which the mature Mo‐ or W‐containing cofactor is inserted into apoprotein.},
doi = {10.1002/pro.3498},
journal = {Protein Science},
number = 1,
volume = 28,
place = {United Kingdom},
year = {Wed Oct 31 00:00:00 EDT 2018},
month = {Wed Oct 31 00:00:00 EDT 2018}
}
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Works referenced in this record:
Formate dehydrogenase from Desulfovibrio desulfuricans ATCC 27774: isolation and spectroscopic characterization of the active sites (heme, iron-sulfur centers and molybdenum)
journal, April 1997
- Costa, Cristina; Teixeira, Miguel; LeGall, Jean
- JBIC Journal of Biological Inorganic Chemistry, Vol. 2, Issue 2
Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation
journal, December 2008
- Ragsdale, Stephen W.; Pierce, Elizabeth
- Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1784, Issue 12, p. 1873-1898
Catalytic properties of an Escherichia coli formate dehydrogenase mutant in which sulfur replaces selenium.
journal, October 1991
- Axley, M. J.; Bock, A.; Stadtman, T. C.
- Proceedings of the National Academy of Sciences, Vol. 88, Issue 19
Spectroscopic and Kinetic Properties of the Molybdenum-containing, NAD + -dependent Formate Dehydrogenase from Ralstonia eutropha
journal, November 2015
- Niks, Dimitri; Duvvuru, Jayant; Escalona, Miguel
- Journal of Biological Chemistry, Vol. 291, Issue 3
Sulfido and Cysteine Ligation Changes at the Molybdenum Cofactor during Substrate Conversion by Formate Dehydrogenase (FDH) from Rhodobacter capsulatus
journal, March 2015
- Schrapers, Peer; Hartmann, Tobias; Kositzki, Ramona
- Inorganic Chemistry, Vol. 54, Issue 7
Formate-reduced E. coli formate dehydrogenase H: the reinterpretation of the crystal structure suggests a new reaction mechanism
journal, July 2006
- Raaijmakers, Hans C. A.; Romão, Maria João
- JBIC Journal of Biological Inorganic Chemistry, Vol. 11, Issue 7
The Active Species of 'CO2' Utilized by Formylmethanofuran Dehydrogenase from Methanogenic Archaea
journal, September 1997
- Vorholt, Julia A.; Thauer, Rudolf K.
- European Journal of Biochemistry, Vol. 248, Issue 3
Kinetic and equilibrium acidities of nitrocycloalkanes
journal, August 1978
- Bordwell, F. G.; Bartmess, John E.; Hautala, Judith A.
- The Journal of Organic Chemistry, Vol. 43, Issue 16
The oxygen-tolerant and NAD + -dependent formate dehydrogenase from Rhodobacter capsulatus is able to catalyze the reduction of CO 2 to formate
journal, October 2013
- Hartmann, Tobias; Leimkühler, Silke
- FEBS Journal, Vol. 280, Issue 23
Coordinate Regulation of the Escherichia coli Formate Dehydrogenase fdnGHI and fdhF Genes in Response to Nitrate, Nitrite, and Formate: Roles for NarL and NarP
journal, August 2003
- Wang, H.; Gunsalus, R. P.
- Journal of Bacteriology, Vol. 185, Issue 17
Molybdenum and tungsten-containing formate dehydrogenases: Aiming to inspire a catalyst for carbon dioxide utilization
journal, January 2017
- Maia, Luisa B.; Moura, Isabel; Moura, José J. G.
- Inorganica Chimica Acta, Vol. 455
X-ray Absorption Spectroscopy of the Molybdenum Site of Escherichia coli Formate Dehydrogenase
journal, February 1998
- George, Graham N.; Colangelo, Christopher M.; Dong, Jun
- Journal of the American Chemical Society, Vol. 120, Issue 6
The tungsten-containing formate dehydrogenase from Methylobacterium extorquens AM1: Purification and properties
journal, January 2003
- Laukel, Markus; Chistoserdova, Ludmila; Lidstrom, Mary E.
- European Journal of Biochemistry, Vol. 270, Issue 2
Selenium-Containing Formate Dehydrogenase H from Escherichia coli : A Molybdopterin Enzyme That Catalyzes Formate Oxidation without Oxygen Transfer
journal, March 1998
- Khangulov, Sergei V.; Gladyshev, Vadim N.; Dismukes, G. Charles
- Biochemistry, Vol. 37, Issue 10
The 1.3 Å Crystal Structure of Rhodobacter sphaeroides Dimethyl Sulfoxide Reductase Reveals Two Distinct Molybdenum Coordination Environments
journal, August 2000
- Li, Hung-Kei; Temple, Carrie; Rajagopalan, K. V.
- Journal of the American Chemical Society, Vol. 122, Issue 32
Cloning and nucleotide sequence of the structural genes encoding the formate dehydrogenase of Wolinella succinogenes
journal, August 1991
- Bokranz, M.; Gutmann, M.; Körtner, C.
- Archives of Microbiology, Vol. 156, Issue 2
Gene Sequence and the 1.8 Å Crystal Structure of the Tungsten-Containing Formate Dehydrogenase from Desulfovibrio gigas
journal, September 2002
- Raaijmakers, Hans; Macieira, Sofia; Dias, João M.
- Structure, Vol. 10, Issue 9
Reduction of Carbon Dioxide by a Molybdenum-Containing Formate Dehydrogenase: A Kinetic and Mechanistic Study
journal, July 2016
- Maia, Luisa B.; Fonseca, Luis; Moura, Isabel
- Journal of the American Chemical Society, Vol. 138, Issue 28
Molybdenum(V) sites in xanthine oxidase and relevant analog complexes: comparison of molybdenum-95 and sulfur-33 hyperfine coupling
journal, August 1991
- Wilson, Graham L.; Greenwood, Richard J.; Pilbrow, John R.
- Journal of the American Chemical Society, Vol. 113, Issue 18
The Sulfur Shift: An Activation Mechanism for Periplasmic Nitrate Reductase and Formate Dehydrogenase
journal, September 2013
- Cerqueira, Nuno M. F. S. A.; Fernandes, Pedro A.; Gonzalez, Pablo J.
- Inorganic Chemistry, Vol. 52, Issue 19
Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria
journal, January 2012
- Babujee, Lavanya; Apodaca, Jennifer; Balakrishnan, Venkatesh
- BMC Genomics, Vol. 13, Issue 1
The Mononuclear Molybdenum Enzymes †
journal, January 1996
- Hille, Russ
- Chemical Reviews, Vol. 96, Issue 7
Isolation and preliminary characterization of a soluble nitrate reductase from the sulfate reducing organism Desulfovibrio desulfuricans ATCC 27774
journal, February 1995
- Bursakov, Sergey; Liu, Ming-Y.; Payne, William J.
- Anaerobe, Vol. 1, Issue 1
Corynebacterium glutamicum harbours a molybdenum cofactor-dependent formate dehydrogenase which alleviates growth inhibition in the presence of formate
journal, July 2012
- Witthoff, S.; Eggeling, L.; Bott, M.
- Microbiology, Vol. 158, Issue Pt_9
A Sulfurtransferase Is Essential for Activity of Formate Dehydrogenases in Escherichia coli
journal, December 2011
- Thomé, Rémi; Gust, Alexander; Toci, René
- Journal of Biological Chemistry, Vol. 287, Issue 7
Properties of formate dehydrogenase in Methanobacterium formicicum.
journal, January 1982
- Schauer, N. L.; Ferry, J. G.
- Journal of Bacteriology, Vol. 150, Issue 1
Formate dehydrogenase of Clostridium pasteurianum.
journal, January 1984
- Liu, C. L.; Mortenson, L. E.
- Journal of Bacteriology, Vol. 159, Issue 1
Sulphur shuttling across a chaperone during molybdenum cofactor maturation
journal, February 2015
- Arnoux, Pascal; Ruppelt, Christian; Oudouhou, Flore
- Nature Communications, Vol. 6, Issue 1
The Reductive Half-reaction of Xanthine Oxidase: REACTION WITH ALDEHYDE SUBSTRATES AND IDENTIFICATION OF THE CATALYTICALLY LABILE OXYGEN
journal, February 1999
- Xia, Min; Dempski, Robert; Hille, Russ
- Journal of Biological Chemistry, Vol. 274, Issue 6
The physiology and habitat of the last universal common ancestor
journal, July 2016
- Weiss, Madeline C.; Sousa, Filipa L.; Mrnjavac, Natalia
- Nature Microbiology, Vol. 1, Issue 9
The biosynthesis of the molybdenum cofactors
journal, July 2014
- Mendel, Ralf R.; Leimkühler, Silke
- JBIC Journal of Biological Inorganic Chemistry, Vol. 20, Issue 2
The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters
journal, October 2016
- Wagner, T.; Ermler, U.; Shima, S.
- Science, Vol. 354, Issue 6308
The chemical reduction of nitrate in aqueous solution
journal, April 2000
- Fanning, J.
- Coordination Chemistry Reviews, Vol. 199, Issue 1
Molecular Basis of Proton Motive Force Generation: Structure of Formate Dehydrogenase-N
journal, March 2002
- Jormakka, M.
- Science, Vol. 295, Issue 5561
The formylmethanofuran dehydrogenase isoenzymes in Methanobacterium wolfei and Methanobacterium thermoautotrophicum : induction of the molybdenum isoenzyme by molybdate and constitutive synthesis of the tungsten isoenzyme
journal, September 1998
- Hochheimer, Andreas; Hedderich, Reiner; Thauer, R. K.
- Archives of Microbiology, Vol. 170, Issue 5
Structural Analysis of the fds Operon Encoding the NAD + -linked Formate Dehydrogenase of Ralstonia eutropha
journal, October 1998
- Oh, Jeong-Il; Bowien, Botho
- Journal of Biological Chemistry, Vol. 273, Issue 41
Efficient reduction of CO 2 by the molybdenum-containing formate dehydrogenase from Cupriavidus necator ( Ralstonia eutropha )
journal, August 2017
- Yu, Xuejun; Niks, Dimitri; Mulchandani, Ashok
- Journal of Biological Chemistry, Vol. 292, Issue 41
Tungsten and Molybdenum Regulation of Formate Dehydrogenase Expression in Desulfovibrio vulgaris Hildenborough
journal, April 2011
- da Silva, S. M.; Pimentel, C.; Valente, F. M. A.
- Journal of Bacteriology, Vol. 193, Issue 12
The Molybdenum Active Site of Formate Dehydrogenase Is Capable of Catalyzing C–H Bond Cleavage and Oxygen Atom Transfer Reactions
journal, April 2016
- Hartmann, Tobias; Schrapers, Peer; Utesch, Tillmann
- Biochemistry, Vol. 55, Issue 16
Crystal Structure of Formate Dehydrogenase H: Catalysis Involving Mo, Molybdopterin, Selenocysteine, and an Fe4S4 Cluster
journal, February 1997
- Boyington, Jeffrey C.; Gladyshev, Vadim N.; Khangulov, Sergei V.
- Science, Vol. 275, Issue 5304, p. 1305-1308
The mechanism of action of xanthine oxidase. The relationship between the rapid and very rapid molybdenum electron-paramagnetic-resonance signals
journal, January 1979
- Bray, R. C.; Gutteridge, S.; Stotter, D. A.
- Biochemical Journal, Vol. 177, Issue 1
Clostridium carboxidivorans Strain P7T Recombinant Formate Dehydrogenase Catalyzes Reduction of CO 2 to Formate
journal, November 2012
- Alissandratos, Apostolos; Kim, Hye-Kyung; Matthews, Hayden
- Applied and Environmental Microbiology, Vol. 79, Issue 2
Tungstoenzymes
journal, January 1996
- Johnson, Michael K.; Rees, Douglas C.; Adams, Michael W. W.
- Chemical Reviews, Vol. 96, Issue 7
Methanogenic archaea: ecologically relevant differences in energy conservation
journal, June 2008
- Thauer, Rudolf K.; Kaster, Anne-Kristin; Seedorf, Henning
- Nature Reviews Microbiology, Vol. 6, Issue 8
Formate dehydrogenase from Methylosinus trichosporium OB3b. Purification and spectroscopic characterization of the cofactors.
journal, November 1991
- Jollie, D. R.; Lipscomb, J. D.
- Journal of Biological Chemistry, Vol. 266, Issue 32
Oxidation-State-Dependent Binding Properties of the Active Site in a Mo-Containing Formate Dehydrogenase
journal, July 2017
- Robinson, William E.; Bassegoda, Arnau; Reisner, Erwin
- Journal of the American Chemical Society, Vol. 139, Issue 29
Direct and Reversible Hydrogenation of CO2 to Formate by a Bacterial Carbon Dioxide Reductase
journal, December 2013
- Schuchmann, K.; Muller, V.
- Science, Vol. 342, Issue 6164
Incorporation of either molybdenum or tungsten into formate dehydrogenase from Desulfovibrio alaskensis NCIMB 13491; EPR assignment of the proximal iron-sulfur cluster to the pterin cofactor in formate dehydrogenases from sulfate-reducing bacteria
journal, December 2003
- Brondino, Carlos D.; Passeggi, Mario C. G.; Caldeira, Jorge
- JBIC Journal of Biological Inorganic Chemistry, Vol. 9, Issue 2
Assembly and catalysis of molybdenum or tungsten-containing formate dehydrogenases from bacteria
journal, September 2015
- Hartmann, Tobias; Schwanhold, Nadine; Leimkühler, Silke
- Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1854, Issue 9
Mutants of Escherichia coli Specifically Deficient in Respiratory Formate Dehydrogenase Activity
journal, December 1988
- Mandrand-Berthelot, M. -A.; Couchoux-Luthaud, G.; Santini, C. -L.
- Microbiology, Vol. 134, Issue 12
Nicotinamide Adenine Dinucleotide Phosphate-Dependent Formate Dehydrogenase from Clostridium thermoaceticum: Purification and Properties
journal, October 1974
- Andreesen, Jan R.; Ljungdahl, Lars G.
- Journal of Bacteriology, Vol. 120, Issue 1
Physiological and biochemical characterization of the soluble formate dehydrogenase, a molybdoenzyme from Alcaligenes eutrophus.
journal, August 1993
- Friedebold, J.; Bowien, B.
- Journal of Bacteriology, Vol. 175, Issue 15
Formylmethanofuran dehydrogenases from methanogenic Archaea Substrate specificity, EPR properties and reversible inactivation by cyanide of the molybdenum or tungsten iron-sulfur proteins
journal, March 1994
- Bertram, Peter A.; Karrasch, Marion; Schmitz, Ruth A.
- European Journal of Biochemistry, Vol. 220, Issue 2
The chaperone FdsC for Rhodobacter capsulatus formate dehydrogenase binds the bis-molybdopterin guanine dinucleotide cofactor
journal, January 2014
- Böhmer, Nadine; Hartmann, Tobias; Leimkühler, Silke
- FEBS Letters, Vol. 588, Issue 4