Enhancing Phenotyping and Molecular Analysis of Plant Root System Using Ultrasound Aeroponic Technology
Abstract
Abstract Several plant growth systems are available to enhance the observation of the root system (e.g., hydroponic and aeroponic plant growth systems, use of transparent soils, etc.). This article describes the use of the ultrasound aeroponic system (USAS) to treat and to enhance access to the root systems of various model plant and crop species (e.g., Arabidopsis thaliana , Medicago truncatula , soybean, etc.). This system is also compatible with short‐term (hr) and long‐term (days/weeks) biotic and abiotic treatments of plants. Upon treatment, the ease of access to the plant root system facilitates phenotyping (e.g., analysis of root architecture, establishment of root light spectrum using remote sensing technology), microscopic, molecular, and biochemical experiments. In addition, to facilitate functional genomic studies, we combined the use of the USAS with the hairy root transformation system to grow and observe transgenic roots on composite legume plants. © 2018 by John Wiley & Sons, Inc.
- Authors:
-
- Center for Plant Science Innovation, Department of Agronomy and Horticulture, Beadle Center, University of Nebraska‐Lincoln Lincoln Nebraska
- Department of Microbiology and Plant Biology, George Lynn Cross Hall, University of Oklahoma, Norman Oklahoma
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1480147
- Grant/Contract Number:
- DE‐SC0012629
- Resource Type:
- Publisher's Accepted Manuscript
- Journal Name:
- Current Protocols in Plant Biology
- Additional Journal Information:
- Journal Name: Current Protocols in Plant Biology Journal Volume: 3 Journal Issue: 4; Journal ID: ISSN 2379-8068
- Publisher:
- Wiley Blackwell (John Wiley & Sons)
- Country of Publication:
- United States
- Language:
- English
Citation Formats
Pingault, Lise, Zogli, Prince, Brooks, Jennifer, and Libault, Marc. Enhancing Phenotyping and Molecular Analysis of Plant Root System Using Ultrasound Aeroponic Technology. United States: N. p., 2018.
Web. doi:10.1002/cppb.20078.
Pingault, Lise, Zogli, Prince, Brooks, Jennifer, & Libault, Marc. Enhancing Phenotyping and Molecular Analysis of Plant Root System Using Ultrasound Aeroponic Technology. United States. https://doi.org/10.1002/cppb.20078
Pingault, Lise, Zogli, Prince, Brooks, Jennifer, and Libault, Marc. Wed .
"Enhancing Phenotyping and Molecular Analysis of Plant Root System Using Ultrasound Aeroponic Technology". United States. https://doi.org/10.1002/cppb.20078.
@article{osti_1480147,
title = {Enhancing Phenotyping and Molecular Analysis of Plant Root System Using Ultrasound Aeroponic Technology},
author = {Pingault, Lise and Zogli, Prince and Brooks, Jennifer and Libault, Marc},
abstractNote = {Abstract Several plant growth systems are available to enhance the observation of the root system (e.g., hydroponic and aeroponic plant growth systems, use of transparent soils, etc.). This article describes the use of the ultrasound aeroponic system (USAS) to treat and to enhance access to the root systems of various model plant and crop species (e.g., Arabidopsis thaliana , Medicago truncatula , soybean, etc.). This system is also compatible with short‐term (hr) and long‐term (days/weeks) biotic and abiotic treatments of plants. Upon treatment, the ease of access to the plant root system facilitates phenotyping (e.g., analysis of root architecture, establishment of root light spectrum using remote sensing technology), microscopic, molecular, and biochemical experiments. In addition, to facilitate functional genomic studies, we combined the use of the USAS with the hairy root transformation system to grow and observe transgenic roots on composite legume plants. © 2018 by John Wiley & Sons, Inc.},
doi = {10.1002/cppb.20078},
journal = {Current Protocols in Plant Biology},
number = 4,
volume = 3,
place = {United States},
year = {Wed Oct 31 00:00:00 EDT 2018},
month = {Wed Oct 31 00:00:00 EDT 2018}
}
https://doi.org/10.1002/cppb.20078
Works referenced in this record:
“Rhizoponics”: a novel hydroponic rhizotron for root system analyses on mature Arabidopsis thaliana plants
journal, January 2015
- Mathieu, Laura; Lobet, Guillaume; Tocquin, Pierre
- Plant Methods, Vol. 11, Issue 1
Control of leghaemoglobin synthesis in snake beans
journal, December 1971
- Broughton, W. J.; Dilworth, M. J.
- Biochemical Journal, Vol. 125, Issue 4
Early vigorous growth is a major factor influencing nitrogen uptake in wheat
journal, January 2004
- Liao, Mingtan; Fillery, Ian R. P.; Palta, Jairo A.
- Functional Plant Biology, Vol. 31, Issue 2
Roles of Phosphatidylinositol 3-Kinase in Root Hair Growth
journal, April 2008
- Lee, Yuree; Bak, Gwangbae; Choi, Yunjung
- Plant Physiology, Vol. 147, Issue 2
A method for the isolation of root hairs from the model legume Medicago truncatula
journal, October 2003
- Ramos, J.
- Journal of Experimental Botany, Vol. 54, Issue 391
Unleashing the potential of the root hair cell as a single plant cell type model in root systems biology
journal, January 2013
- Qiao, Zhenzhen; Libault, Marc
- Frontiers in Plant Science, Vol. 4
Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing
journal, February 2016
- Veerappan, Vijaykumar; Jani, Mehul; Kadel, Khem
- BMC Genomics, Vol. 17, Issue 1
CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer
journal, May 2017
- Gnesutta, Nerina; Kumimoto, Roderick W.; Swain, Swadhin
- The Plant Cell, Vol. 29, Issue 6
Plant gene expression in effective and ineffective root nodules of alfalfa (Medicago sativa)
journal, September 1987
- Lullien, V.; Barker, D. G.; de Lajudie, P.
- Plant Molecular Biology, Vol. 9, Issue 5
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
journal, November 2009
- Libault, Marc; Farmer, Andrew; Brechenmacher, Laurent
- Plant Physiology, Vol. 152, Issue 2
Agrobacterium rhizogenes-mediated transformation of soybean to study root biology
journal, April 2007
- Kereszt, Attila; Li, Dongxue; Indrasumunar, Arief
- Nature Protocols, Vol. 2, Issue 4
An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants: Soybean transcriptome atlas
journal, April 2010
- Libault, Marc; Farmer, Andrew; Joshi, Trupti
- The Plant Journal
NIH Image to ImageJ: 25 years of image analysis
journal, June 2012
- Schneider, Caroline A.; Rasband, Wayne S.; Eliceiri, Kevin W.
- Nature Methods, Vol. 9, Issue 7
Multiple Domains in MtENOD8 Protein Including the Signal Peptide Target It to The Symbiosome
journal, March 2012
- Meckfessel, Matthew H.; Blancaflor, Elison B.; Plunkett, Michael
- Plant Physiology, Vol. 159, Issue 1
Soybean Metabolites Regulated in Root Hairs in Response to the Symbiotic Bacterium Bradyrhizobium japonicum
journal, June 2010
- Brechenmacher, Laurent; Lei, Zhentian; Libault, Marc
- Plant Physiology, Vol. 153, Issue 4
Generation of Soybean (Glycine max) Transient Transgenic Roots
journal, May 2016
- Tóth, Katalin; Batek, Josef; Stacey, Gary
- Current Protocols in Plant Biology, Vol. 1, Issue 1
Preferential expression of an ammonium transporter and of two putative nitrate transporters in root hairs of tomato.
journal, July 1996
- Lauter, F. R.; Ninnemann, O.; Bucher, M.
- Proceedings of the National Academy of Sciences, Vol. 93, Issue 15
A Gene Regulatory Network for Root Epidermis Cell Differentiation in Arabidopsis
journal, January 2012
- Bruex, Angela; Kainkaryam, Raghunandan M.; Wieckowski, Yana
- PLoS Genetics, Vol. 8, Issue 1
High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation
journal, November 2016
- Li, Song; Yamada, Masashi; Han, Xinwei
- Developmental Cell, Vol. 39, Issue 4
Effect of phosphorus deficiency on growth angle of basal roots in Phaseolus vulgaris
journal, February 1996
- Bonser, Amy M.; Lynch, Jonathan; Snapp, Sieglinde
- New Phytologist, Vol. 132, Issue 2