Search Menu
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information
Search Scholarly Publications

Title: Complete Genome Sequence of Enterococcus durans Oregon-R-modENCODE Strain BDGP3, a Lactic Acid Bacterium Found in the Drosophila melanogaster Gut

Abstract

ABSTRACT Enterococcus durans Oregon-R-modENCODE strain BDGP3 was isolated from the Drosophila melanogaster gut for functional host-microbe interaction studies. The complete genome is composed of a single circular genome of 2,983,334 bp, with a G+C content of 38%, and a single plasmid of 5,594 bp.

Authors:
 [1];  [1];  [1];  [1];  [1];  [1]
+ Show Author Affiliations
  1. Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
1608716
Alternate Identifier(s):
OSTI ID: 1476547
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Published Article
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Name: Genome Announcements Journal Volume: 5 Journal Issue: 40; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Wan, Kenneth H., Yu, Charles, Park, Soo, Hammonds, Ann S., Booth, Benjamin W., and Celniker, Susan E. Complete Genome Sequence of Enterococcus durans Oregon-R-modENCODE Strain BDGP3, a Lactic Acid Bacterium Found in the Drosophila melanogaster Gut. United States: N. p., 2017. Web. doi:10.1128/genomeA.01041-17.
Copy to clipboard
Wan, Kenneth H., Yu, Charles, Park, Soo, Hammonds, Ann S., Booth, Benjamin W., & Celniker, Susan E. Complete Genome Sequence of Enterococcus durans Oregon-R-modENCODE Strain BDGP3, a Lactic Acid Bacterium Found in the Drosophila melanogaster Gut. United States. https://doi.org/10.1128/genomeA.01041-17
Copy to clipboard
Wan, Kenneth H., Yu, Charles, Park, Soo, Hammonds, Ann S., Booth, Benjamin W., and Celniker, Susan E. Thu . "Complete Genome Sequence of Enterococcus durans Oregon-R-modENCODE Strain BDGP3, a Lactic Acid Bacterium Found in the Drosophila melanogaster Gut". United States. https://doi.org/10.1128/genomeA.01041-17.
Copy to clipboard
@article{osti_1608716,
title = {Complete Genome Sequence of Enterococcus durans Oregon-R-modENCODE Strain BDGP3, a Lactic Acid Bacterium Found in the Drosophila melanogaster Gut},
author = {Wan, Kenneth H. and Yu, Charles and Park, Soo and Hammonds, Ann S. and Booth, Benjamin W. and Celniker, Susan E.},
abstractNote = {ABSTRACT Enterococcus durans Oregon-R-modENCODE strain BDGP3 was isolated from the Drosophila melanogaster gut for functional host-microbe interaction studies. The complete genome is composed of a single circular genome of 2,983,334 bp, with a G+C content of 38%, and a single plasmid of 5,594 bp.},
doi = {10.1128/genomeA.01041-17},
journal = {Genome Announcements},
number = 40,
volume = 5,
place = {United States},
year = {Thu Oct 05 00:00:00 EDT 2017},
month = {Thu Oct 05 00:00:00 EDT 2017}
}
Copy to clipboard
Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1128/genomeA.01041-17
Copyright Statement
Other availability
Search WorldCat Search WorldCat to find libraries that may hold this journal
Save / Share:
Export Metadata
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.

Works referenced in this record:

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
journal, May 2013

  • Chin, Chen-Shan; Alexander, David H.; Marks, Patrick
  • Nature Methods, Vol. 10, Issue 6
  • DOI: 10.1038/nmeth.2474

Native Microbial Colonization of Drosophila melanogaster and Its Use as a Model of Enterococcus faecalis Pathogenesis
journal, January 2007

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
journal, September 2012

Reducing assembly complexity of microbial genomes with single-molecule sequencing
journal, January 2013

“First Generation” Automated DNA Sequencing Technology
journal, October 2011

  • Slatko, Barton E.; Kieleczawa, Jan; Ju, Jingyue
  • Current Protocols in Molecular Biology, Vol. 96, Issue 1
  • DOI: 10.1002/0471142727.mb0702s96

Preparation of Genomic DNA from Bacteria
journal, October 2001

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
journal, November 2013

  • Overbeek, Ross; Olson, Robert; Pusch, Gordon D.
  • Nucleic Acids Research, Vol. 42, Issue D1
  • DOI: 10.1093/nar/gkt1226

Prophages and bacterial genomics: what have we learned so far?: Prophage genomics
journal, June 2003

    Sort by:
    [ × clear filter / sort ]

    Similar Records in DOE PAGES and OSTI.GOV collections: