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Title: The transcriptional activator GaaR of Aspergillus niger is required for release and utilization of d- galacturonic acid from pectin

Journal Article · · FEBS Letters
 [1];  [2];  [3];  [3];  [3];  [4];  [5];  [3];  [2]
  1. Leiden Univ. (Netherlands); Leiden University
  2. Leiden Univ. (Netherlands)
  3. Univ. of Utrecht (Netherlands)
  4. Wageningen Univ. (Netherlands)
  5. Leiden Univ. (Netherlands); Univ. of Utrecht (Netherlands)

We identified the d-galacturonic acid (GA)-responsive transcriptional activator GaaR of the saprotrophic fungus, Aspergillus niger, which was found to be essential for growth on GA and polygalacturonic acid (PGA). Growth of the ΔgaaR strain was reduced on complex pectins. Genome-wide expression analysis showed that GaaR is required for the expression of genes necessary to release GA from PGA and more complex pectins, to transport GA into the cell, and to induce the GA catabolic pathway. Residual growth of ΔgaaR on complex pectins is likely due to the expression of pectinases acting on rhamnogalacturonan and subsequent metabolism of the monosaccharides other than GA.

Research Organization:
Univ. of Georgia, Athens, GA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22). Chemical Sciences, Geosciences & Biosciences Division
Grant/Contract Number:
FG02-93ER20097
OSTI ID:
1437993
Journal Information:
FEBS Letters, Journal Name: FEBS Letters Journal Issue: 12 Vol. 590; ISSN 0014-5793
Publisher:
Federation of European Biochemical SocietiesCopyright Statement
Country of Publication:
United States
Language:
English

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation journal May 2010
SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation journal July 2020
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Cited By (29)

The pathway intermediate 2-keto-3-deoxy-L-galactonate mediates the induction of genes involved in D-galacturonic acid utilization in Aspergillus niger journal May 2017
Inducer-independent production of pectinases in Aspergillus niger by overexpression of the D-galacturonic acid-responsive transcription factor gaaR journal January 2018
Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin journal September 2017
Machine learning prediction of novel pectinolytic enzymes in Aspergillus niger through integrating heterogeneous (post-) genomics data journal December 2021
Genomewide and Enzymatic Analysis Reveals Efficient D-Galacturonic Acid Metabolism in the Basidiomycete Yeast Rhodosporidium toruloides journal December 2019
Expression-based clustering of CAZyme-encoding genes of Aspergillus niger journal November 2017
Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network journal November 2019
In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR journal November 2017
Hypoxia is regulating enzymatic wood decomposition and intracellular carbohydrate metabolism in filamentous white rot fungus journal February 2020
Identification of a Novel L-rhamnose Uptake Transporter in the Filamentous Fungus Aspergillus niger journal December 2016
Modulating Transcriptional Regulation of Plant Biomass Degrading Enzyme Networks for Rational Design of Industrial Fungal Strains journal September 2018
Regulatory Mechanisms of a Highly Pectinolytic Mutant of Penicillium occitanis and Functional Analysis of a Candidate Gene in the Plant Pathogen Fusarium oxysporum journal September 2017
In Silico Analysis of Putative Sugar Transporter Genes in Aspergillus niger Using Phylogeny and Comparative Transcriptomics journal May 2018
W361R mutation in GaaR, the regulator of D‐galacturonic acid‐responsive genes, leads to constitutive production of pectinases in Aspergillus niger journal October 2018
Inducer-independent production of pectinases in Aspergillus niger by overexpression of the D-galacturonic acid-responsive transcription factor gaaR journal January 2018
Spotlight on fungal pectin utilization—from phytopathogenicity to molecular recognition and industrial applications journal January 2019
Mutations in AraR leading to constitutive of arabinolytic genes in Aspergillus niger under derepressing conditions journal April 2019
Induction of Genes Encoding Plant Cell Wall-Degrading Carbohydrate-Active Enzymes by Lignocellulose-Derived Monosaccharides and Cellobiose in the White-Rot Fungus Dichomitus squalens journal March 2018
Genomewide and Enzymatic Analysis Reveals Efficient D-Galacturonic Acid Metabolism in the Basidiomycete Yeast Rhodosporidium toruloides journal December 2019
Expression-based clustering of CAZyme-encoding genes of Aspergillus niger journal November 2017
Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network journal November 2019
In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR journal November 2017
Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments journal February 2017
Regulators of plant biomass degradation in ascomycetous fungi journal June 2017
Hypoxia is regulating enzymatic wood decomposition and intracellular carbohydrate metabolism in filamentous white rot fungus journal February 2020
Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose journal April 2020
Microbial hexuronate catabolism in biotechnology journal January 2019
An Evolutionarily Conserved Transcriptional Activator-Repressor Module Controls Expression of Genes for D-Galacturonic Acid Utilization in Aspergillus niger journal November 2016
Modulating Transcriptional Regulation of Plant Biomass Degrading Enzyme Networks for Rational Design of Industrial Fungal Strains journal September 2018

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