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Title: FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool

FQC is software that facilitates quality control of FASTQ files by carrying out a QC protocol using FastQC, parsing results, and aggregating quality metrics into an interactive dashboard designed to richly summarize individual sequencing runs. The dashboard groups samples in dropdowns for navigation among the data sets, utilizes human-readable configuration files to manipulate the pages and tabs, and is extensible with CSV data.
Authors:
 [1] ;  [2] ;  [1]
  1. Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Earth and Biological Sciences Division
  2. Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Computation and Analytics Division
Publication Date:
Report Number(s):
PNNL-SA-124428
Journal ID: ISSN 1367-4803
Grant/Contract Number:
AC06-76RL01830
Type:
Accepted Manuscript
Journal Name:
Bioinformatics
Additional Journal Information:
Journal Volume: 33; Journal Issue: 19; Journal ID: ISSN 1367-4803
Publisher:
Oxford University Press
Research Org:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Sponsoring Org:
USDOE; PNNL Laboratory Directed Research and Development (LDRD) Program
Country of Publication:
United States
Language:
English
Subject:
97 MATHEMATICS AND COMPUTING; 59 BASIC BIOLOGICAL SCIENCES; data and text mining
OSTI Identifier:
1430724