The Kalanchoe genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Yang, Xiaohan; Hu, Rongbin; Yin, Hengfu; Jenkins, Jerry; Shu, Shengqiang; Tang, Haibao; Liu, Degao; Weighill, Deborah A.; Yim, Won Cheol; Ha, Jungmin; Heyduk, Karolina; Goodstein, David M.; Guo, Hao -Bo; Moseley, Robert C.; Fitzek, Elisabeth; Jawdy, Sara; Zhang, Zhihao; Xie, Meng; Hartwell, James; Grimwood, Jane; Abraham, Paul E.; Mewalal, Ritesh; Beltran, Juan D.; Boxall, Susanna F.; Dever, Louisa V.; Palla, Kaitlin J.; Albion, Rebecca; Garcia, Travis; Mayer, Jesse A.; Lim, Sung Don; Wai, Ching Man; Peluso, Paul; Van Buren, Robert; De Paoli, Henrique Cestari; Borland, Anne M.; Guo, Hong; Chen, Jin -Gui; Muchero, Wellington; Yin, Yanbin; Jacobson, Daniel A.; Tschaplinski, Timothy J.; Hettich, Robert L.; Ming, Ray; Winter, Klaus; Leebens-Mack, James H.; Smith, J. Andrew C.; Cushman, John C.; Schmutz, Jeremy; Tuskan, Gerald A.

doi:10.1038/s41467-017-01491-7

Title: The Kalanchoe genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Journal Article · Thu Nov 30 23:00:00 EST 2017 · Nature Communications

DOI: https://doi.org/10.1038/s41467-017-01491-7 · OSTI ID:1413629

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^[2]; Jenkins, Jerry ^[3]; Shu, Shengqiang ^[4];

^[5]; Liu, Degao ^[2];

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^[6]; Ha, Jungmin ^[6]; Heyduk, Karolina ^[7]; Goodstein, David M. ^[4]; Guo, Hao -Bo ^[8]; Moseley, Robert C. ^[1]; Fitzek, Elisabeth ^[9]; Jawdy, Sara ^[2]; Zhang, Zhihao ^[2];

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^[10]; Grimwood, Jane ^[3] more »

Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Univ. of Tennessee, Knoxville, TN (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Fujian Agriculture and Forestry Univ., Fujian (China)
Univ. of Nevada, Reno, NV (United States)
Univ. of Georgia, Athens, GA (United States)
Univ. of Tennessee, Knoxville, TN (United States)
Northern Illinois Univ., DeKalb, IL (United States)
Univ. of Liverpool, Liverpool (United Kingdom)
Univ. of Oxford, Oxford (United Kingdom)
Univ. of Illinois at Urbana-Champaign, Urbana, IL (United States)
Pacific Biosciences, Inc., Menlo Park, CA (United States)
Michigan State Univ., East Lansing, MI (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Newcastle Univ., Newcastle upon Tyne (United Kingdom)
Fujian Agriculture and Forestry Univ., Fujian (China); Univ. of Illinois at Urbana-Champaign, Urbana, IL (United States)
Smithsonian Tropical Research Institute, Ancon (Republic of Panama)
HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States); USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)

Crassulacean acid metabolism (CAM) is a specialized photosynthetic adaptation to arid environments, found predominantly in diverse eudicotyledonous (eudicot) and monocotyledonous (monocot) lineages that diverged approximately 135 million years ago. To test whether convergent evolution underpins the independent emergences of CAM, we present de novo genome assembly and gene expression data for Kalanchoë fedtschenkoi, an obligate CAM species that was shown by multigene phylogenetic analysis to represent one of the earliest-diverging lineages of core eudicots. Our combined analysis of K. fedtschenkoi and two monocot CAM species (Ananas comosus and Phalaenopsis equestris) identified signatures of convergence in protein sequence and in the diel re-scheduling of genes involved in metabolism and signaling. Lastly, our results provide significant insight into CAM evolution, facilitating CAM-into-C₃ engineering for enhancing drought tolerance in crops.

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Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization:: DOE Office of Science; USDOE

Grant/Contract Number:: AC05-00OR22725

OSTI ID:: 1413629

Journal Information:: Nature Communications, Journal Name: Nature Communications Journal Issue: 1 Vol. 8; ISSN 2041-1723

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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