Flux balance analysis of photoautotrophic metabolism: Uncovering new biological details of subsystems involved in cyanobacterial photosynthesis
- Authors:
- Publication Date:
- Sponsoring Org.:
- USDOE Office of Energy Efficiency and Renewable Energy (EERE)
- OSTI Identifier:
- 1430752
- Alternate Identifier(s):
- OSTI ID: 1411470
- Grant/Contract Number:
- EE0003373; FA9550-11-1-0231
- Resource Type:
- Published Article
- Journal Name:
- Biochimica et Biophysica Acta - Bioenergetics
- Additional Journal Information:
- Journal Name: Biochimica et Biophysica Acta - Bioenergetics Journal Volume: 1858 Journal Issue: 4; Journal ID: ISSN 0005-2728
- Publisher:
- Elsevier
- Country of Publication:
- Netherlands
- Language:
- English
Citation Formats
Qian, Xiao, Kim, Min Kyung, Kumaraswamy, G. Kenchappa, Agarwal, Ananya, Lun, Desmond S., and Dismukes, G. Charles. Flux balance analysis of photoautotrophic metabolism: Uncovering new biological details of subsystems involved in cyanobacterial photosynthesis. Netherlands: N. p., 2017.
Web. doi:10.1016/j.bbabio.2016.12.007.
Qian, Xiao, Kim, Min Kyung, Kumaraswamy, G. Kenchappa, Agarwal, Ananya, Lun, Desmond S., & Dismukes, G. Charles. Flux balance analysis of photoautotrophic metabolism: Uncovering new biological details of subsystems involved in cyanobacterial photosynthesis. Netherlands. https://doi.org/10.1016/j.bbabio.2016.12.007
Qian, Xiao, Kim, Min Kyung, Kumaraswamy, G. Kenchappa, Agarwal, Ananya, Lun, Desmond S., and Dismukes, G. Charles. Sat .
"Flux balance analysis of photoautotrophic metabolism: Uncovering new biological details of subsystems involved in cyanobacterial photosynthesis". Netherlands. https://doi.org/10.1016/j.bbabio.2016.12.007.
@article{osti_1430752,
title = {Flux balance analysis of photoautotrophic metabolism: Uncovering new biological details of subsystems involved in cyanobacterial photosynthesis},
author = {Qian, Xiao and Kim, Min Kyung and Kumaraswamy, G. Kenchappa and Agarwal, Ananya and Lun, Desmond S. and Dismukes, G. Charles},
abstractNote = {},
doi = {10.1016/j.bbabio.2016.12.007},
journal = {Biochimica et Biophysica Acta - Bioenergetics},
number = 4,
volume = 1858,
place = {Netherlands},
year = {Sat Apr 01 00:00:00 EDT 2017},
month = {Sat Apr 01 00:00:00 EDT 2017}
}
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https://doi.org/10.1016/j.bbabio.2016.12.007
https://doi.org/10.1016/j.bbabio.2016.12.007
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Cited by: 27 works
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Works referenced in this record:
Effect of Nitrogen on Growth and Lipid Content of Chlorella pyrenoidosa
journal, March 2011
- Nigam, Subhasha; Rai, Monika Prakash; Sharma, Rupali
- American Journal of Biochemistry and Biotechnology, Vol. 7, Issue 3, p. 126-131
Metabolic model of Synechococcus sp. PCC 7002: Prediction of flux distribution and network modification for enhanced biofuel production
journal, August 2016
- Hendry, John I.; Prasannan, Charulata B.; Joshi, Aditi
- Bioresource Technology, Vol. 213
Metabolic Fluxes in an Illuminated Arabidopsis Rosette
journal, February 2013
- Szecowka, Marek; Heise, Robert; Tohge, Takayuki
- The Plant Cell, Vol. 25, Issue 2
Construction, characterization and application of molecular tools for metabolic engineering of Synechocystis sp.
journal, June 2013
- Qi, Fengxia; Yao, Lun; Tan, Xiaoming
- Biotechnology Letters, Vol. 35, Issue 10
Effect of Nitrogen Starvation on Polypeptide Composition, Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase, and Thylakoid Carotenoprotein Content of Synechocystis sp. Strain PCC6308
journal, October 1990
- Duke, Clifford S.; Allen, Mary M.
- Plant Physiology, Vol. 94, Issue 2
Redirecting Reductant Flux into Hydrogen Production via Metabolic Engineering of Fermentative Carbon Metabolism in a Cyanobacterium
journal, June 2010
- McNeely, K.; Xu, Y.; Bennette, N.
- Applied and Environmental Microbiology, Vol. 76, Issue 15
Computational evaluation of Synechococcus sp. PCC 7002 metabolism for chemical production
journal, April 2013
- Vu, Trang T.; Hill, Eric A.; Kucek, Leo A.
- Biotechnology Journal, Vol. 8, Issue 5
Genetic Engineering of Algae for Enhanced Biofuel Production
journal, February 2010
- Radakovits, R.; Jinkerson, R. E.; Darzins, A.
- Eukaryotic Cell, Vol. 9, Issue 4, p. 486-501
High-throughput generation, optimization and analysis of genome-scale metabolic models
journal, August 2010
- Henry, Christopher S.; DeJongh, Matthew; Best, Aaron A.
- Nature Biotechnology, Vol. 28, Issue 9
Flux Balance Analysis of Photoautotrophic Metabolism
journal, December 2005
- Shastri, A. A.; Morgan, J. A.
- Biotechnology Progress, Vol. 21, Issue 6
Carbohydrate Metabolism in Mutants of the Cyanobacterium Synechococcus elongatus PCC 7942 Defective in Glycogen Synthesis
journal, April 2010
- Suzuki, E.; Ohkawa, H.; Moriya, K.
- Applied and Environmental Microbiology, Vol. 76, Issue 10, p. 3153-3159
The Shikimate Pathway
journal, June 1999
- Herrmann, Klaus M.; Weaver, Lisa M.
- Annual Review of Plant Physiology and Plant Molecular Biology, Vol. 50, Issue 1
Transformation in Agmenellum quadruplicatum
journal, October 1980
- Stevens, S. E.; Porter, R. D.
- Proceedings of the National Academy of Sciences, Vol. 77, Issue 10
Dark fermentative hydrogen production by the unicellular halotolerant cyanobacterium Aphanothece halophytica grown in seawater
journal, April 2014
- Taikhao, Samart; Incharoensakdi, Aran; Phunpruch, Saranya
- Journal of Applied Phycology, Vol. 27, Issue 1
An LC–MS-Based Chemical and Analytical Method for Targeted Metabolite Quantification in the Model Cyanobacterium Synechococcus sp. PCC 7002
journal, May 2011
- Bennette, Nicholas B.; Eng, John F.; Dismukes, G. Charles
- Analytical Chemistry, Vol. 83, Issue 10
Regulatory branch points affecting protein and lipid biosynthesis in the diatom Phaeodactylum tricornutum
journal, December 2013
- Guerra, L. Tiago; Levitan, Orly; Frada, Miguel J.
- Biomass and Bioenergy, Vol. 59
Kinetics and energetics of photosynthetic micro-organisms in photobioreactors
book, January 2007
- Cornet, J. -F.; Dussap, C. G.; Gros, J. -B.
- Advances in Biochemical Engineering Biotechnology
Cyanobacteria and microalgae: A positive prospect for biofuels
journal, November 2011
- Parmar, Asha; Singh, Niraj Kumar; Pandey, Ashok
- Bioresource Technology, Vol. 102, Issue 22
Effect of light intensity on macromolecular synthesis in cyanobacteria
journal, December 1980
- Konopka, Allan; Schnur, Marilyn
- Microbial Ecology, Vol. 6, Issue 4
Engineering cyanobacteria to improve photosynthetic production of alka(e)nes
journal, January 2013
- Wang, Weihua; Liu, Xufeng; Lu, Xuefeng
- Biotechnology for Biofuels, Vol. 6, Issue 1
Elucidating temporal resource allocation and diurnal dynamics in phototrophic metabolism using conditional FBA
journal, October 2015
- Rügen, Marco; Bockmayr, Alexander; Steuer, Ralf
- Scientific Reports, Vol. 5, Issue 1
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
journal, October 2003
- Mahadevan, R.; Schilling, C. H.
- Metabolic Engineering, Vol. 5, Issue 4
Large‐scale identification of genetic design strategies using local search
journal, January 2009
- Lun, Desmond S.; Rockwell, Graham; Guido, Nicholas J.
- Molecular Systems Biology, Vol. 5, Issue 1
Lipid productivity as a key characteristic for choosing algal species for biodiesel production
journal, January 2009
- Griffiths, Melinda J.; Harrison, Susan T. L.
- Journal of Applied Phycology, Vol. 21, Issue 5
Renewable energy from Cyanobacteria: energy production optimization by metabolic pathway engineering
journal, June 2011
- Quintana, Naira; Van der Kooy, Frank; Van de Rhee, Miranda D.
- Applied Microbiology and Biotechnology, Vol. 91, Issue 3
Nitrogen Starvation-Induced Chlorosis in Synechococcus PCC 7942. Low-Level Photosynthesis As a Mechanism of Long-Term Survival
journal, May 2001
- Sauer, Jörg; Schreiber, Ulrich; Schmid, Roland
- Plant Physiology, Vol. 126, Issue 1
Modeling and Simulation of Optimal Resource Management during the Diurnal Cycle in Emiliania huxleyi by Genome-Scale Reconstruction and an Extended Flux Balance Analysis Approach
journal, October 2015
- Knies, David; Wittmüß, Philipp; Appel, Sebastian
- Metabolites, Vol. 5, Issue 4
Characterization of two cytochrome oxidase operons in the marine cyanobacterium Synechococcus sp. PCC 7002: Inactivation of ctaDI affects the PS I:PS II ratio
journal, January 2006
- Nomura, Christopher T.; Persson, Søren; Shen, Gaozhong
- Photosynthesis Research, Vol. 87, Issue 2
Reconstruction of biochemical networks in microorganisms
journal, December 2008
- Feist, Adam M.; Herrgård, Markus J.; Thiele, Ines
- Nature Reviews Microbiology, Vol. 7, Issue 2
Genome-scale modeling of Synechocystis sp. PCC 6803 and prediction of pathway insertion
journal, April 2009
- Fu, Pengcheng
- Journal of Chemical Technology & Biotechnology, Vol. 84, Issue 4
CO2-limitation-inducible Green Recovery of fatty acids from cyanobacterial biomass
journal, April 2011
- Liu, X.; Fallon, S.; Sheng, J.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 17, p. 6905-6908
Dynamic metabolic profiling of cyanobacterial glycogen biosynthesis under conditions of nitrate depletion
journal, May 2013
- Hasunuma, Tomohisa; Kikuyama, Fumi; Matsuda, Mami
- Journal of Experimental Botany, Vol. 64, Issue 10
Using Genome-scale Models to Predict Biological Capabilities
journal, May 2015
- O’Brien, Edward J.; Monk, Jonathan M.; Palsson, Bernhard O.
- Cell, Vol. 161, Issue 5
Modulation of the Major Paths of Carbon in Photorespiratory Mutants of Synechocystis
journal, January 2011
- Huege, Jan; Goetze, Jan; Schwarz, Doreen
- PLoS ONE, Vol. 6, Issue 1
Reprogramming the glycolytic pathway for increased hydrogen production in cyanobacteria: metabolic engineering of NAD+-dependent GAPDH
journal, January 2013
- Kumaraswamy, G. Kenchappa; Guerra, Tiago; Qian, Xiao
- Energy & Environmental Science, Vol. 6, Issue 12
Photosystem I cyclic electron flow via chloroplast NADH dehydrogenase-like complex performs a physiological role for photosynthesis at low light
journal, September 2015
- Yamori, Wataru; Shikanai, Toshiharu; Makino, Amane
- Scientific Reports, Vol. 5, Issue 1
The evolution of inorganic carbon concentrating mechanisms in photosynthesis
journal, May 2008
- Raven, John A.; Cockell, Charles S.; De La Rocha, Christina L.
- Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 363, Issue 1504
Cyclic, pseudocyclic and noncyclic photophosphorylation: new links in the chain
journal, January 2003
- Allen, John F.
- Trends in Plant Science, Vol. 8, Issue 1
Identification of Functional Differences in Metabolic Networks Using Comparative Genomics and Constraint-Based Models
journal, April 2012
- Hamilton, Joshua J.; Reed, Jennifer L.
- PLoS ONE, Vol. 7, Issue 4
Acclimation of the Global Transcriptome of the Cyanobacterium Synechococcus sp. Strain PCC 7002 to Nutrient Limitations and Different Nitrogen Sources
journal, January 2012
- Ludwig, Marcus; Bryant, Donald A.
- Frontiers in Microbiology, Vol. 3
MOST: a software environment for constraint-based metabolic modeling and strain design
journal, October 2014
- Kelley, James J.; Lane, Anatoliy; Li, Xiaowei
- Bioinformatics, Vol. 31, Issue 4
Mapping photoautotrophic metabolism with isotopically nonstationary 13C flux analysis
journal, November 2011
- Young, Jamey D.; Shastri, Avantika A.; Stephanopoulos, Gregory
- Metabolic Engineering, Vol. 13, Issue 6
Natural osmolytes are much less effective substrates than glycogen for catabolic energy production in the marine cyanobacterium Synechococcus sp. strain PCC 7002
journal, July 2013
- Guerra, L. Tiago; Xu, Yu; Bennette, Nicholas
- Journal of Biotechnology, Vol. 166, Issue 3
Optimizing genome-scale network reconstructions
journal, May 2014
- Monk, Jonathan; Nogales, Juan; Palsson, Bernhard O.
- Nature Biotechnology, Vol. 32, Issue 5
The Metabolic Network of Synechocystis sp. PCC 6803: Systemic Properties of Autotrophic Growth
journal, July 2010
- Knoop, Henning; Zilliges, Yvonne; Lockau, Wolfgang
- Plant Physiology, Vol. 154, Issue 1
Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis
journal, January 2012
- Nogales, J.; Gudmundsson, S.; Knight, E. M.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 7
What is flux balance analysis?
journal, March 2010
- Orth, Jeffrey D.; Thiele, Ines; Palsson, Bernhard Ø
- Nature Biotechnology, Vol. 28, Issue 3
The effect of low light flux and nitrogen deficiency on the chemical composition of Spirulina sp. (Arthrospira) grown on digested pig waste
journal, March 2001
- Olguı́n, Eugenia J.; Galicia, Sonia; Angulo-Guerrero, Ofelia
- Bioresource Technology, Vol. 77, Issue 1
Transparency in metabolic network reconstruction enables scalable biological discovery
journal, August 2015
- Heavner, Benjamin D.; Price, Nathan D.
- Current Opinion in Biotechnology, Vol. 34
Flux balance analysis of biological systems: applications and challenges
journal, March 2009
- Raman, K.; Chandra, N.
- Briefings in Bioinformatics, Vol. 10, Issue 4
The Tricarboxylic Acid Cycle in Cyanobacteria
journal, December 2011
- Zhang, S.; Bryant, D. A.
- Science, Vol. 334, Issue 6062
Metabolic Engineering of Synechocystis sp. Strain PCC 6803 for Isobutanol Production
journal, November 2012
- Varman, Arul M.; Xiao, Yi; Pakrasi, Himadri B.
- Applied and Environmental Microbiology, Vol. 79, Issue 3