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Title: Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules

Abstract

Micromonospora species live in diverse environments and exhibit a broad range of functions, including antibiotic production, biocontrol, and degradation of complex polysaccharides. To learn more about these versatile actinomycetes, we sequenced the genome of strain L5, originally isolated from root nodules of an actinorhizal plant growing in Mexico.

Authors:
 [1];  [2];  [3];  [3];  [4];  [3];  [2];  [5];  [5];  [3];  [3];  [6];  [2];  [2];  [6];  [3];  [5];  [2];  [5];  [7]
+ Show Author Affiliations
  1. Univ. of California, Los Angeles, CA (United States). Dept. of Molecular, Cell and Developmental Biology. Molecular Biology Inst.
  2. Univ. of California, Los Angeles, CA (United States). Dept. of Molecular, Cell and Developmental Biology
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  4. Univ. of California, Los Angeles, CA (United States). Molecular Biology Inst.
  5. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  6. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  7. National Polytechnic Inst. (IPN), Mexico City (Mexico). National School of Biological Sciences (ENCB). Dept. of Microbiology
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Council of Science and Technology (CONACYT) (Mexico)
OSTI Identifier:
1407197
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 1; Journal Issue: 5; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Hirsch, Ann M., Alvarado, Johana, Bruce, David, Chertkov, Olga, De Hoff, Peter L., Detter, John C., Fujishige, Nancy A., Goodwin, Lynne A., Han, James, Han, Shunsheng, Ivanova, Natalia, Land, Miriam L., Lum, Michelle R., Milani-Nejad, Nima, Nolan, Matt, Pati, Amrita, Pitluck, Sam, Tran, Stephen S., Woyke, Tanja, and Valdes, Maria. Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules. United States: N. p., 2013. Web. doi:10.1128/genomea.00759-13.
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Hirsch, Ann M., Alvarado, Johana, Bruce, David, Chertkov, Olga, De Hoff, Peter L., Detter, John C., Fujishige, Nancy A., Goodwin, Lynne A., Han, James, Han, Shunsheng, Ivanova, Natalia, Land, Miriam L., Lum, Michelle R., Milani-Nejad, Nima, Nolan, Matt, Pati, Amrita, Pitluck, Sam, Tran, Stephen S., Woyke, Tanja, & Valdes, Maria. Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules. United States. https://doi.org/10.1128/genomea.00759-13
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Hirsch, Ann M., Alvarado, Johana, Bruce, David, Chertkov, Olga, De Hoff, Peter L., Detter, John C., Fujishige, Nancy A., Goodwin, Lynne A., Han, James, Han, Shunsheng, Ivanova, Natalia, Land, Miriam L., Lum, Michelle R., Milani-Nejad, Nima, Nolan, Matt, Pati, Amrita, Pitluck, Sam, Tran, Stephen S., Woyke, Tanja, and Valdes, Maria. Thu . "Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules". United States. https://doi.org/10.1128/genomea.00759-13. https://www.osti.gov/servlets/purl/1407197.
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@article{osti_1407197,
title = {Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules},
author = {Hirsch, Ann M. and Alvarado, Johana and Bruce, David and Chertkov, Olga and De Hoff, Peter L. and Detter, John C. and Fujishige, Nancy A. and Goodwin, Lynne A. and Han, James and Han, Shunsheng and Ivanova, Natalia and Land, Miriam L. and Lum, Michelle R. and Milani-Nejad, Nima and Nolan, Matt and Pati, Amrita and Pitluck, Sam and Tran, Stephen S. and Woyke, Tanja and Valdes, Maria},
abstractNote = {Micromonospora species live in diverse environments and exhibit a broad range of functions, including antibiotic production, biocontrol, and degradation of complex polysaccharides. To learn more about these versatile actinomycetes, we sequenced the genome of strain L5, originally isolated from root nodules of an actinorhizal plant growing in Mexico.},
doi = {10.1128/genomea.00759-13},
journal = {Genome Announcements},
number = 5,
volume = 1,
place = {United States},
year = {Thu Sep 26 00:00:00 EDT 2013},
month = {Thu Sep 26 00:00:00 EDT 2013}
}
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https://doi.org/10.1128/genomea.00759-13
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Works referenced in this record:

Micromonospora coriariae sp. nov., isolated from root nodules of Coriaria myrtifolia
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Genome sequencing in microfabricated high-density picolitre reactors
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  • Nature, Vol. 437, Issue 7057, p. 376-380
  • DOI: 10.1038/nature03959

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  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 10
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Micromonospora lupini sp. nov. and Micromonospora saelicesensis sp. nov., isolated from root nodules of Lupinus angustifolius
journal, December 2007

  • Trujillo, M. E.; Kroppenstedt, R. M.; Fernandez-Molinero, C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 12
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
journal, February 2008

Base-Calling of Automated Sequencer Traces Using Phred.  I. Accuracy Assessment
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  • Genome Research, Vol. 8, Issue 3
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Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
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    Inoculation with a microbe isolated from the Negev Desert enhances corn growth
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    The plant-growth-promoting actinobacteria of the genus Nocardia induces root nodule formation in Casuarina glauca
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    Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential
    journal, January 2018

    Inoculation With a Microbe Isolated From the Negev Desert Enhances Corn Growth
    journal, June 2020

    Micromonospora from nitrogen fixing nodules of alfalfa (Medicago sativa L.). A new promising Plant Probiotic Bacteria.
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    Draft Genome Sequence of Micromonospora sp . Strain HK10, Isolated from Kaziranga National Park, India
    journal, August 2016

    • Talukdar, Madhumita; Das, Dhrubajyoti; Borah, Chiranjeeta
    • Genome Announcements, Vol. 4, Issue 4
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    Mangrove rare actinobacteria: taxonomy, natural compound, and discovery of bioactivity
    journal, August 2015

    • Azman, Adzzie-Shazleen; Othman, Iekhsan; Velu, Saraswati S.
    • Frontiers in Microbiology, Vol. 6
    • DOI: 10.3389/fmicb.2015.00856

    Endophytic Actinobacteria and the Interaction of Micromonospora and Nitrogen Fixing Plants
    journal, December 2015

    Taxonomy and systematics of plant probiotic bacteria in the genomic era
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    • Ramírez, María Valdés; Calzadíaz, Liliana
    • Actinobacteria - Basics and Biotechnological Applications
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