Analytical structure, dynamics, and coarse graining of a kinetic model of an active fluid
- Authors:
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1380061
- Grant/Contract Number:
- FG02-88ER25053
- Resource Type:
- Publisher's Accepted Manuscript
- Journal Name:
- Physical Review Fluids
- Additional Journal Information:
- Journal Name: Physical Review Fluids Journal Volume: 2 Journal Issue: 9; Journal ID: ISSN 2469-990X
- Publisher:
- American Physical Society
- Country of Publication:
- United States
- Language:
- English
Citation Formats
Gao, Tong, Betterton, Meredith D., Jhang, An-Sheng, and Shelley, Michael J. Analytical structure, dynamics, and coarse graining of a kinetic model of an active fluid. United States: N. p., 2017.
Web. doi:10.1103/PhysRevFluids.2.093302.
Gao, Tong, Betterton, Meredith D., Jhang, An-Sheng, & Shelley, Michael J. Analytical structure, dynamics, and coarse graining of a kinetic model of an active fluid. United States. https://doi.org/10.1103/PhysRevFluids.2.093302
Gao, Tong, Betterton, Meredith D., Jhang, An-Sheng, and Shelley, Michael J. Fri .
"Analytical structure, dynamics, and coarse graining of a kinetic model of an active fluid". United States. https://doi.org/10.1103/PhysRevFluids.2.093302.
@article{osti_1380061,
title = {Analytical structure, dynamics, and coarse graining of a kinetic model of an active fluid},
author = {Gao, Tong and Betterton, Meredith D. and Jhang, An-Sheng and Shelley, Michael J.},
abstractNote = {},
doi = {10.1103/PhysRevFluids.2.093302},
journal = {Physical Review Fluids},
number = 9,
volume = 2,
place = {United States},
year = {Fri Sep 08 00:00:00 EDT 2017},
month = {Fri Sep 08 00:00:00 EDT 2017}
}
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1103/PhysRevFluids.2.093302
https://doi.org/10.1103/PhysRevFluids.2.093302
Other availability
Search WorldCat to find libraries that may hold this journal
Cited by: 38 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Model for dynamical coherence in thin films of self-propelled microorganisms
journal, April 2007
- Aranson, Igor S.; Sokolov, Andrey; Kessler, John O.
- Physical Review E, Vol. 75, Issue 4
Self-Concentration and Large-Scale Coherence in Bacterial Dynamics
journal, August 2004
- Dombrowski, Christopher; Cisneros, Luis; Chatkaew, Sunita
- Physical Review Letters, Vol. 93, Issue 9
An Antipodally Symmetric Distribution on the Sphere
journal, November 1974
- Bingham, Christopher
- The Annals of Statistics, Vol. 2, Issue 6
Instabilities and topological defects in active nematics
journal, January 2014
- Thampi, Sumesh P.; Golestanian, Ramin; Yeomans, Julia M.
- EPL (Europhysics Letters), Vol. 105, Issue 1
Bacterial cell division: assembly, maintenance and disassembly of the Z ring
journal, September 2009
- Adams, David W.; Errington, Jeff
- Nature Reviews Microbiology, Vol. 7, Issue 9
Defect Annihilation and Proliferation in Active Nematics
journal, May 2013
- Giomi, Luca; Bowick, Mark J.; Ma, Xu
- Physical Review Letters, Vol. 110, Issue 22
Emergence of macroscopic directed motion in populations of motile colloids
journal, November 2013
- Bricard, Antoine; Caussin, Jean-Baptiste; Desreumaux, Nicolas
- Nature, Vol. 503, Issue 7474
Spontaneous motion in hierarchically assembled active matter
journal, November 2012
- Sanchez, Tim; Chen, Daniel T. N.; DeCamp, Stephen J.
- Nature, Vol. 491, Issue 7424
Statistical mechanics and hydrodynamics of bacterial suspensions
journal, August 2009
- Baskaran, Aparna; Marchetti, M. Cristina
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 37
Catalytically driven assembly of trisegmented metallic nanorods and polystyrene tracer particles
journal, January 2016
- Jewell, Erik L.; Wang, Wei; Mallouk, Thomas E.
- Soft Matter, Vol. 12, Issue 9
Deformation of elastic particles in viscous shear flow
journal, April 2009
- Gao, Tong; Hu, Howard H.
- Journal of Computational Physics, Vol. 228, Issue 6
Flow-induced nonequilibrium self-assembly in suspensions of stiff, apolar, active filaments
journal, January 2016
- Pandey, Ankita; Sunil Kumar, P. B.; Adhikari, R.
- Soft Matter, Vol. 12, Issue 44
The Mechanics and Statistics of Active Matter
journal, August 2010
- Ramaswamy, Sriram
- Annual Review of Condensed Matter Physics, Vol. 1, Issue 1
Instabilities and nonlinear dynamics of concentrated active suspensions
journal, July 2013
- Ezhilan, Barath; Shelley, Michael J.; Saintillan, David
- Physics of Fluids, Vol. 25, Issue 7
Slender-body theory for slow viscous flow
journal, June 1976
- Keller, Joseph B.; Rubinow, Sol I.
- Journal of Fluid Mechanics, Vol. 75, Issue 4
Complex Spontaneous Flows and Concentration Banding in Active Polar Films
journal, November 2008
- Giomi, Luca; Marchetti, M. Cristina; Liverpool, Tanniemola B.
- Physical Review Letters, Vol. 101, Issue 19
Collective Surfing of Chemically Active Particles
journal, March 2014
- Masoud, Hassan; Shelley, Michael J.
- Physical Review Letters, Vol. 112, Issue 12
Physical Properties Determining Self-Organization of Motors and Microtubules
journal, May 2001
- Surrey, T.
- Science, Vol. 292, Issue 5519
GMRES: A Generalized Minimal Residual Algorithm for Solving Nonsymmetric Linear Systems
journal, July 1986
- Saad, Youcef; Schultz, Martin H.
- SIAM Journal on Scientific and Statistical Computing, Vol. 7, Issue 3
Critical bacterial concentration for the onset of collective swimming
journal, July 2009
- Subramanian, Ganesh; Koch, Donald L.
- Journal of Fluid Mechanics, Vol. 632
Confinement Stabilizes a Bacterial Suspension into a Spiral Vortex
journal, June 2013
- Wioland, Hugo; Woodhouse, Francis G.; Dunkel, Jörn
- Physical Review Letters, Vol. 110, Issue 26
Local well-posedness and small Deborah limit of a molecule-based $Q$-tensor system
journal, August 2015
- Li, Sirui; Wang, Wei; Zhang, Pingwen
- Discrete and Continuous Dynamical Systems - Series B, Vol. 20, Issue 8
Fluid flows created by swimming bacteria drive self-organization in confined suspensions
journal, June 2014
- Lushi, Enkeleida; Wioland, Hugo; Goldstein, Raymond E.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 27
Removing the stiffness from interfacial flows with surface tension
journal, October 1994
- Hou, Thomas Y.; Lowengrub, John S.; Shelley, Michael J.
- Journal of Computational Physics, Vol. 114, Issue 2
Boltzmann and hydrodynamic description for self-propelled particles
journal, August 2006
- Bertin, Eric; Droz, Michel; Grégoire, Guillaume
- Physical Review E, Vol. 74, Issue 2
Excitable Patterns in Active Nematics
journal, May 2011
- Giomi, L.; Mahadevan, L.; Chakraborty, B.
- Physical Review Letters, Vol. 106, Issue 21
Geometric control of active collective motion
journal, January 2017
- Theillard, Maxime; Alonso-Matilla, Roberto; Saintillan, David
- Soft Matter, Vol. 13, Issue 2
From Microscopic Theory to Macroscopic Theory: a Systematic Study on Modeling for Liquid Crystals
journal, September 2014
- Han, Jiequn; Luo, Yi; Wang, Wei
- Archive for Rational Mechanics and Analysis, Vol. 215, Issue 3
Instabilities and Pattern Formation in Active Particle Suspensions: Kinetic Theory and Continuum Simulations
journal, April 2008
- Saintillan, David; Shelley, Michael J.
- Physical Review Letters, Vol. 100, Issue 17
Emergence of coherent structures and large-scale flows in motile suspensions
journal, August 2011
- Saintillan, David; Shelley, Michael J.
- Journal of The Royal Society Interface, Vol. 9, Issue 68
Microtubule organization by the antagonistic mitotic motors kinesin-5 and kinesin-14
journal, May 2010
- Hentrich, Christian; Surrey, Thomas
- The Journal of Cell Biology, Vol. 189, Issue 3
The Stokesian hydrodynamics of flexing, stretching filaments
journal, November 2000
- Shelley, Michael J.; Ueda, Tetsuji
- Physica D: Nonlinear Phenomena, Vol. 146, Issue 1-4
Catalytic Nanomotors: Autonomous Movement of Striped Nanorods
journal, October 2004
- Paxton, Walter F.; Kistler, Kevin C.; Olmeda, Christine C.
- Journal of the American Chemical Society, Vol. 126, Issue 41
Geometry and Topology of Turbulence in Active Nematics
journal, July 2015
- Giomi, Luca
- Physical Review X, Vol. 5, Issue 3
Collective motion and density fluctuations in bacterial colonies
journal, July 2010
- Zhang, H. P.; Be'er, A.; Florin, E. - L.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 31
Ferromagnetic and antiferromagnetic order in bacterial vortex lattices
journal, January 2016
- Wioland, Hugo; Woodhouse, Francis G.; Dunkel, Jörn
- Nature Physics, Vol. 12, Issue 4
Experimental study of ILU preconditioners for indefinite matrices
journal, December 1997
- Chow, Edmond; Saad, Yousef
- Journal of Computational and Applied Mathematics, Vol. 86, Issue 2
Living Crystals of Light-Activated Colloidal Surfers
journal, January 2013
- Palacci, J.; Sacanna, S.; Steinberg, A. P.
- Science, Vol. 339, Issue 6122
A closure approximation for liquid-crystalline polymer models based on parametric density estimation
journal, January 1998
- Chaubal, Charu V.; Leal, L. Gary
- Journal of Rheology, Vol. 42, Issue 1
Closure approximations for the Doi theory: Which to use in simulating complex flows of liquid-crystalline polymers?
journal, September 1998
- Feng, J.; Chaubal, C. V.; Leal, L. G.
- Journal of Rheology, Vol. 42, Issue 5
Topology and dynamics of active nematic vesicles
journal, September 2014
- Keber, F. C.; Loiseau, E.; Sanchez, T.
- Science, Vol. 345, Issue 6201
Direct Numerical Simulations of Fluid–Solid Systems Using the Arbitrary Lagrangian–Eulerian Technique
journal, May 2001
- Hu, Howard H.; Patankar, N. A.; Zhu, M. Y.
- Journal of Computational Physics, Vol. 169, Issue 2
Viscous fingering in liquid crystals
journal, October 1987
- Buka, A.; Palffy-Muhoray, P.; Rácz, Z.
- Physical Review A, Vol. 36, Issue 8
Transition from turbulent to coherent flows in confined three-dimensional active fluids
journal, March 2017
- Wu, Kun-Ta; Hishamunda, Jean Bernard; Chen, Daniel T. N.
- Science, Vol. 355, Issue 6331
Mesoscopic theory for fluctuating active nematics
journal, August 2013
- Bertin, Eric; Chaté, Hugues; Ginelli, Francesco
- New Journal of Physics, Vol. 15, Issue 8
Orientational Order and Instabilities in Suspensions of Self-Locomoting Rods
journal, July 2007
- Saintillan, David; Shelley, Michael J.
- Physical Review Letters, Vol. 99, Issue 5
The Effects of Shape on the Interaction of Colloidal Particles
journal, May 1949
- Onsager, Lars
- Annals of the New York Academy of Sciences, Vol. 51, Issue 4
Swimmers in Thin Films: From Swarming to Hydrodynamic Instabilities
journal, December 2010
- Leoni, Marco; Liverpool, Tanniemola B.
- Physical Review Letters, Vol. 105, Issue 23
The Dynamics of Microtubule/Motor-Protein Assemblies in Biology and Physics
journal, January 2016
- Shelley, Michael J.
- Annual Review of Fluid Mechanics, Vol. 48, Issue 1
The stress system in a suspension of force-free particles
journal, April 1970
- Batchelor, G. K.
- Journal of Fluid Mechanics, Vol. 41, Issue 3
Constitutive equations in suspension mechanics. Part 2. Approximate forms for a suspension of rigid particles affected by Brownian rotations
journal, July 1976
- Hinch, E. J.; Leal, L. G.
- Journal of Fluid Mechanics, Vol. 76, Issue 1
Spontaneous Circulation of Confined Active Suspensions
journal, October 2012
- Woodhouse, Francis G.; Goldstein, Raymond E.
- Physical Review Letters, Vol. 109, Issue 16
Multiscale modeling and simulation of microtubule–motor-protein assemblies
journal, December 2015
- Gao, Tong; Blackwell, Robert; Glaser, Matthew A.
- Physical Review E, Vol. 92, Issue 6
Hierarchical self-organization of cytoskeletal active networks
journal, April 2012
- Gordon, Daniel; Bernheim-Groswasser, Anne; Keasar, Chen
- Physical Biology, Vol. 9, Issue 2
Large-scale simulation of steady and time-dependent active suspensions with the force-coupling method
journal, December 2015
- Delmotte, Blaise; Keaveny, Eric E.; Plouraboué, Franck
- Journal of Computational Physics, Vol. 302
The Motion of Ellipsoidal Particles Immersed in a Viscous Fluid
journal, November 1922
- Jeffery, G. B.
- Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 102, Issue 715
Velocity Correlations in an Active Nematic
journal, September 2013
- Thampi, Sumesh P.; Golestanian, Ramin; Yeomans, Julia M.
- Physical Review Letters, Vol. 111, Issue 11
Nonparabolic dissipative systems modeling the flow of liquid crystals
journal, January 1995
- Lin, Fang-Hua; Liu, Chun
- Communications on Pure and Applied Mathematics, Vol. 48, Issue 5
Spontaneous flow transition in active polar gels
journal, May 2005
- Voituriez, R.; Joanny, J. F.; Prost, J.
- Europhysics Letters (EPL), Vol. 70, Issue 3
Active nematic materials with substrate friction
journal, December 2014
- Thampi, Sumesh P.; Golestanian, Ramin; Yeomans, Julia M.
- Physical Review E, Vol. 90, Issue 6
Active suspensions and their nonlinear models
journal, June 2013
- Saintillan, David; Shelley, Michael J.
- Comptes Rendus Physique, Vol. 14, Issue 6
Instabilities, pattern formation, and mixing in active suspensions
journal, December 2008
- Saintillan, David; Shelley, Michael J.
- Physics of Fluids, Vol. 20, Issue 12
Multiscale Polar Theory of Microtubule and Motor-Protein Assemblies
journal, January 2015
- Gao, Tong; Blackwell, Robert; Glaser, Matthew A.
- Physical Review Letters, Vol. 114, Issue 4
Density Shock Waves in Confined Microswimmers
journal, January 2016
- Tsang, Alan Cheng Hou; Kanso, Eva
- Physical Review Letters, Vol. 116, Issue 4
Transport of a dilute active suspension in pressure-driven channel flow
journal, July 2015
- Ezhilan, Barath; Saintillan, David
- Journal of Fluid Mechanics, Vol. 777
Statistical hydrodynamics of ordered suspensions of self-propelled particles: waves, giant number fluctuations and instabilities
journal, April 2002
- Simha, R. Aditi; Ramaswamy, Sriram
- Physica A: Statistical Mechanics and its Applications, Vol. 306
Stability of active suspensions
journal, April 2010
- Hohenegger, Christel; Shelley, Michael J.
- Physical Review E, Vol. 81, Issue 4
Collective Swimming and the Dynamics of Bacterial Turbulence
journal, August 2008
- Wolgemuth, Charles W.
- Biophysical Journal, Vol. 95, Issue 4
A Quantitative Analysis of Contractility in Active Cytoskeletal Protein Networks
journal, April 2008
- Bendix, Poul M.; Koenderink, Gijsje H.; Cuvelier, Damien
- Biophysical Journal, Vol. 94, Issue 8