Search Menu
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information
Search Scholarly Publications

Title: Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

Abstract

Desert plants are hypothesized to survive the environmental stress inherent to these regions in part thanks to symbioses with microorganisms, and yet these microbial species, the communities they form, and the forces that influence them are poorly understood. Here we report the first comprehensive investigation of the microbial communities associated with species of Agave, which are native to semiarid and arid regions of Central and North America and are emerging as biofuel feedstocks. We examined prokaryotic and fungal communities in the rhizosphere, phyllosphere, leaf and root endosphere, as well as proximal and distal soil samples from cultivated and native agaves, through Illumina amplicon sequencing. Phylogenetic profiling revealed that the composition of prokaryotic communities was primarily determined by the plant compartment, whereas the composition of fungal communities was mainly influenced by the biogeography of the host species. Cultivated A. tequilana exhibited lower levels of prokaryotic diversity compared with native agaves, although no differences in microbial diversity were found in the endosphere. Agaves shared core prokaryotic and fungal taxa known to promote plant growth and confer tolerance to abiotic stress, which suggests common principles underpinning Agave-microbe interactions.

Authors:
 [1];  [2];  [2];  [3];  [3];  [3];  [4];  [5]; ORCiD logo [2];  [3]
+ Show Author Affiliations
  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Genomics Division; USDA Agricultural Research Service (ARS), Albany, CA (United States). Plant Gene Expression Center
  2. Center for Research and Advanced Studies (CINVESTAV), Irapuato (Mexico). Dept. of Genetic Engineering
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Genomics Division
  4. Occidental College, Los Angeles, CA (United States). Dept. of Biology
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Genomics Division; Univ. of California, Merced, CA (United States). School of Natural Sciences
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Council of Science and Technology (CONACYT) (Mexico)
Contributing Org.:
USDA Agricultural Research Service (ARS), Albany, CA (United States); Occidental College, Los Angeles, CA (United States); Univ. of California, Merced, CA (United States)
OSTI Identifier:
1378714
Grant/Contract Number:  
AC02-05CH11231; CB-2010-01-151007; INFR-2012-01-197799
Resource Type:
Accepted Manuscript
Journal Name:
New Phytologist
Additional Journal Information:
Journal Volume: 209; Journal Issue: 2; Journal ID: ISSN 0028-646X
Publisher:
Wiley
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Agave; biogeography; cultivation; desert; iTags; microbial diversity; plant microbiome; plant-microbe interactions

Citation Formats

Coleman-Derr, Devin, Desgarennes, Damaris, Fonseca-Garcia, Citlali, Gross, Stephen, Clingenpeel, Scott, Woyke, Tanja, North, Gretchen, Visel, Axel, Partida-Martinez, Laila P., and Tringe, Susannah G. Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species. United States: N. p., 2015. Web. doi:10.1111/nph.13697.
Copy to clipboard
Coleman-Derr, Devin, Desgarennes, Damaris, Fonseca-Garcia, Citlali, Gross, Stephen, Clingenpeel, Scott, Woyke, Tanja, North, Gretchen, Visel, Axel, Partida-Martinez, Laila P., & Tringe, Susannah G. Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species. United States. https://doi.org/10.1111/nph.13697
Copy to clipboard
Coleman-Derr, Devin, Desgarennes, Damaris, Fonseca-Garcia, Citlali, Gross, Stephen, Clingenpeel, Scott, Woyke, Tanja, North, Gretchen, Visel, Axel, Partida-Martinez, Laila P., and Tringe, Susannah G. Thu . "Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species". United States. https://doi.org/10.1111/nph.13697. https://www.osti.gov/servlets/purl/1378714.
Copy to clipboard
@article{osti_1378714,
title = {Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species},
author = {Coleman-Derr, Devin and Desgarennes, Damaris and Fonseca-Garcia, Citlali and Gross, Stephen and Clingenpeel, Scott and Woyke, Tanja and North, Gretchen and Visel, Axel and Partida-Martinez, Laila P. and Tringe, Susannah G.},
abstractNote = {Desert plants are hypothesized to survive the environmental stress inherent to these regions in part thanks to symbioses with microorganisms, and yet these microbial species, the communities they form, and the forces that influence them are poorly understood. Here we report the first comprehensive investigation of the microbial communities associated with species of Agave, which are native to semiarid and arid regions of Central and North America and are emerging as biofuel feedstocks. We examined prokaryotic and fungal communities in the rhizosphere, phyllosphere, leaf and root endosphere, as well as proximal and distal soil samples from cultivated and native agaves, through Illumina amplicon sequencing. Phylogenetic profiling revealed that the composition of prokaryotic communities was primarily determined by the plant compartment, whereas the composition of fungal communities was mainly influenced by the biogeography of the host species. Cultivated A. tequilana exhibited lower levels of prokaryotic diversity compared with native agaves, although no differences in microbial diversity were found in the endosphere. Agaves shared core prokaryotic and fungal taxa known to promote plant growth and confer tolerance to abiotic stress, which suggests common principles underpinning Agave-microbe interactions.},
doi = {10.1111/nph.13697},
journal = {New Phytologist},
number = 2,
volume = 209,
place = {United States},
year = {Thu Oct 15 00:00:00 EDT 2015},
month = {Thu Oct 15 00:00:00 EDT 2015}
}
Copy to clipboard
Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1111/nph.13697
Copyright Statement
Other availability
Search WorldCat Search WorldCat to find libraries that may hold this journal
Citation Metrics:
Cited by: 453 works
Citation information provided by
Web of Science
Save / Share:
Export Metadata
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.

Works referenced in this record:

Exploiting the potential of plants with crassulacean acid metabolism for bioenergy production on marginal lands
journal, April 2009

  • Borland, A. M.; Griffiths, H.; Hartwell, J.
  • Journal of Experimental Botany, Vol. 60, Issue 10
  • DOI: 10.1093/jxb/erp118

Diversity and distribution of soil fungal communities in a semiarid grassland
journal, January 2011

  • Porras-Alfaro, Andrea; Herrera, Jose; Natvig, Donald O.
  • Mycologia, Vol. 103, Issue 1
  • DOI: 10.3852/09-297

Potential of Plants from the Genus Agave as Bioenergy Crops
journal, October 2011

Structure, variation, and assembly of the root-associated microbiomes of rice
journal, January 2015

  • Edwards, Joseph; Johnson, Cameron; Santos-Medellín, Christian
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 8
  • DOI: 10.1073/pnas.1414592112

A strong species?area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi
journal, June 2007

Practical innovations for high-throughput amplicon sequencing
journal, September 2013

  • Lundberg, Derek S.; Yourstone, Scott; Mieczkowski, Piotr
  • Nature Methods, Vol. 10, Issue 10
  • DOI: 10.1038/nmeth.2634

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
journal, June 2007

  • Wang, Q.; Garrity, G. M.; Tiedje, J. M.
  • Applied and Environmental Microbiology, Vol. 73, Issue 16
  • DOI: 10.1128/AEM.00062-07

Genome-wide association study of Arabidopsis thaliana leaf microbial community
journal, November 2014

  • Horton, Matthew W.; Bodenhausen, Natacha; Beilsmith, Kathleen
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms6320

Impact of Shortened Crop Rotation of Oilseed Rape on Soil and Rhizosphere Microbial Diversity in Relation to Yield Decline
journal, April 2013

Microbial community biogeographic patterns in the rhizosphere of two Brazilian semi-arid leguminous trees
journal, February 2013

  • Lançoni, Milena Duarte; Taketani, Rodrigo Gouvêa; Kavamura, Vanessa Nessner
  • World Journal of Microbiology and Biotechnology, Vol. 29, Issue 7
  • DOI: 10.1007/s11274-013-1286-4

Going back to the roots: the microbial ecology of the rhizosphere
journal, September 2013

  • Philippot, Laurent; Raaijmakers, Jos M.; Lemanceau, Philippe
  • Nature Reviews Microbiology, Vol. 11, Issue 11
  • DOI: 10.1038/nrmicro3109

Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns
journal, October 2013

  • Meiser, Anjuli; Bálint, Miklós; Schmitt, Imke
  • New Phytologist, Vol. 201, Issue 2
  • DOI: 10.1111/nph.12532

Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys
journal, December 2011

  • Werner, Jeffrey J.; Zhou, Dennis; Caporaso, J. Gregory
  • The ISME Journal, Vol. 6, Issue 7
  • DOI: 10.1038/ismej.2011.186

Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi
journal, October 2006

  • Taylor, John W.; Turner, Elizabeth; Townsend, Jeffrey P.
  • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 361, Issue 1475
  • DOI: 10.1098/rstb.2006.1923

Selection on soil microbiomes reveals reproducible impacts on plant function
journal, October 2014

  • Panke-Buisse, Kevin; Poole, Angela C.; Goodrich, Julia K.
  • The ISME Journal, Vol. 9, Issue 4
  • DOI: 10.1038/ismej.2014.196

Warwick Hillier: a tribute
journal, July 2014

  • Messinger, Johannes; Debus, Richard; Dismukes, G. Charles
  • Photosynthesis Research, Vol. 122, Issue 1
  • DOI: 10.1007/s11120-014-0025-5

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
journal, March 2013

  • Lindahl, Björn D.; Nilsson, R. Henrik; Tedersoo, Leho
  • New Phytologist, Vol. 199, Issue 1
  • DOI: 10.1111/nph.12243

Agave proves to be a low recalcitrant lignocellulosic feedstock for biofuels production on semi-arid lands
journal, January 2014

  • Li, Hongjia; Pattathil, Sivakumar; Foston, Marcus B.
  • Biotechnology for Biofuels, Vol. 7, Issue 1
  • DOI: 10.1186/1754-6834-7-50

Increased photosyntethic efficiency generated by fungal symbiosis in Agave victoria-reginae
journal, September 2003

Plant-Growth-Promoting Rhizobacteria
journal, October 2009

Exploiting the potential of plants with crassulacean acid metabolism for bioenergy production on marginal lands
journal, April 2009

  • Borland, A. M.; Griffiths, H.; Hartwell, J.
  • Journal of Experimental Botany, Vol. 60, Issue 10
  • DOI: 10.1093/jxb/erp118

Saving the agave
journal, December 2005

Selective progressive response of soil microbial community to wild oat roots
journal, November 2008

  • DeAngelis, Kristen M.; Brodie, Eoin L.; DeSantis, Todd Z.
  • The ISME Journal, Vol. 3, Issue 2
  • DOI: 10.1038/ismej.2008.103

Impact of Shortened Crop Rotation of Oilseed Rape on Soil and Rhizosphere Microbial Diversity in Relation to Yield Decline
journal, April 2013

Diversity and distribution of soil fungal communities in a semiarid grassland
journal, January 2011

  • Porras-Alfaro, Andrea; Herrera, Jose; Natvig, Donald O.
  • Mycologia, Vol. 103, Issue 1
  • DOI: 10.3852/09-297

Defining the core Arabidopsis thaliana root microbiome
journal, August 2012

  • Lundberg, Derek S.; Lebeis, Sarah L.; Paredes, Sur Herrera
  • Nature, Vol. 488, Issue 7409
  • DOI: 10.1038/nature11237

The importance of the microbiome of the plant holobiont
journal, February 2015

  • Vandenkoornhuyse, Philippe; Quaiser, Achim; Duhamel, Marie
  • New Phytologist, Vol. 206, Issue 4
  • DOI: 10.1111/nph.13312

The Phylogenetic Diversity of Metagenomes
journal, August 2011

UPARSE: highly accurate OTU sequences from microbial amplicon reads
journal, August 2013

Taxonomical and functional microbial community selection in soybean rhizosphere
journal, February 2014

  • Mendes, Lucas W.; Kuramae, Eiko E.; Navarrete, Acácio A.
  • The ISME Journal, Vol. 8, Issue 8
  • DOI: 10.1038/ismej.2014.17

Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities
journal, December 2012

  • Rodrigues, J. L. M.; Pellizari, V. H.; Mueller, R.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 3
  • DOI: 10.1073/pnas.1220608110

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
journal, October 2013

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
journal, July 2015

Microbial inoculants and organic amendment improves plant establishment and soil rehabilitation under semiarid conditions
journal, February 2014

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
journal, March 2015

  • Bulgarelli, Davide; Garrido-Oter, Ruben; Münch, Philipp C.
  • Cell Host & Microbe, Vol. 17, Issue 3
  • DOI: 10.1016/j.chom.2015.01.011

Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution
journal, August 2008

The plant microbiome
journal, June 2013

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
journal, August 2012

  • Bulgarelli, Davide; Rott, Matthias; Schlaeppi, Klaus
  • Nature, Vol. 488, Issue 7409
  • DOI: 10.1038/nature11336

Genetic transformation of Agave salmiana by Agrobacterium tumefaciens and particle bombardment
journal, September 2007

  • Flores-Benítez, Silvia; Jiménez-Bremont, Juan F.; Rosales-Mendoza, Sergio
  • Plant Cell, Tissue and Organ Culture, Vol. 91, Issue 3
  • DOI: 10.1007/s11240-007-9287-3

Diversity and heritability of the maize rhizosphere microbiome under field conditions
text, January 2013

  • Z., Jin,; S., Buckler, E.; O., Koren,
  • The University of North Carolina at Chapel Hill University Libraries
  • DOI: 10.17615/rzga-0c56

Inside the root microbiome: Bacterial root endophytes and plant growth promotion
journal, September 2013

  • Gaiero, Jonathan R.; McCall, Crystal A.; Thompson, Karen A.
  • American Journal of Botany, Vol. 100, Issue 9
  • DOI: 10.3732/ajb.1200572

Light to liquid fuel: theoretical and realized energy conversion efficiency of plants using Crassulacean Acid Metabolism (CAM) in arid conditions
journal, April 2014

  • Davis, Sarah C.; LeBauer, David S.; Long, Stephen P.
  • Journal of Experimental Botany, Vol. 65, Issue 13
  • DOI: 10.1093/jxb/eru163

Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys
journal, December 2011

  • Werner, Jeffrey J.; Zhou, Dennis; Caporaso, J. Gregory
  • The ISME Journal, Vol. 6, Issue 7
  • DOI: 10.1038/ismej.2011.186

Diversity and heritability of the maize rhizosphere microbiome under field conditions
journal, April 2013

  • Peiffer, J. A.; Spor, A.; Koren, O.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 16
  • DOI: 10.1073/pnas.1302837110

Highlights for Agave Productivity: AGAVE PRODUCTIVITY
journal, November 2010

Analysis of gene sequences indicates that quantity not quality of chloroplast small HSPs improves thermotolerance in C4 and CAM plants
journal, July 2012

UPARSE: highly accurate OTU sequences from microbial amplicon reads
journal, August 2013

Plant-Growth-Promoting Rhizobacteria
journal, October 2009

Photosynthetic acclimation to drought stress in Agave salmiana Otto ex Salm-Dyck seedlings is largely dependent on thermal dissipation and enhanced electron flux to photosystem I
journal, May 2014

  • Campos, Huitziméngari; Trejo, Carlos; Peña-Valdivia, Cecilia B.
  • Photosynthesis Research, Vol. 122, Issue 1
  • DOI: 10.1007/s11120-014-0008-6

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives
journal, December 2013

  • Schlaeppi, K.; Dombrowski, N.; Oter, R. G.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 2
  • DOI: 10.1073/pnas.1321597111

The Soil Microbiome Influences Grapevine-Associated Microbiota
journal, March 2015

  • Zarraonaindia, Iratxe; Owens, Sarah M.; Weisenhorn, Pamela
  • mBio, Vol. 6, Issue 2
  • DOI: 10.1128/mBio.02527-14

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States
journal, October 2013

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
journal, March 2013

  • Lindahl, Björn D.; Nilsson, R. Henrik; Tedersoo, Leho
  • New Phytologist, Vol. 199, Issue 1
  • DOI: 10.1111/nph.12243

Associations with rhizosphere bacteria can confer an adaptive advantage to plants
journal, May 2015

Microbial inoculants and organic amendment improves plant establishment and soil rehabilitation under semiarid conditions
journal, February 2014

Rhizosphere microbiome assemblage is affected by plant development
journal, November 2013

  • Chaparro, Jacqueline M.; Badri, Dayakar V.; Vivanco, Jorge M.
  • The ISME Journal, Vol. 8, Issue 4
  • DOI: 10.1038/ismej.2013.196

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
journal, March 2015

  • Bulgarelli, Davide; Garrido-Oter, Ruben; Münch, Philipp C.
  • Cell Host & Microbe, Vol. 17, Issue 3
  • DOI: 10.1016/j.chom.2015.01.011

Defining the core Arabidopsis thaliana root microbiome
text, January 2012

  • E., Ley, Ruth; Julien, Tremblay,; L., Dangl, Jeffery
  • The University of North Carolina at Chapel Hill University Libraries
  • DOI: 10.17615/w03e-5q36

Identifying Factors Controlling the Continuous Corn Yield Penalty
journal, January 2013

  • Gentry, Laura F.; Ruffo, Matias L.; Below, Fred E.
  • Agronomy Journal, Vol. 105, Issue 2
  • DOI: 10.2134/agronj2012.0246

Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts
journal, May 2005

The global potential for Agave as a biofuel feedstock: AGAVE AS A BIOFUEL FEEDSTOCK
journal, November 2010

Diazotrophic potential among bacterial communities associated with wild and cultivated Agave species
journal, November 2014

  • Desgarennes, Damaris; Garrido, Etzel; Torres-Gomez, Miryam J.
  • FEMS Microbiology Ecology, Vol. 90, Issue 3
  • DOI: 10.1111/1574-6941.12438

Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns
journal, October 2013

  • Meiser, Anjuli; Bálint, Miklós; Schmitt, Imke
  • New Phytologist, Vol. 201, Issue 2
  • DOI: 10.1111/nph.12532

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
journal, August 2012

  • Bulgarelli, Davide; Rott, Matthias; Schlaeppi, Klaus
  • Nature, Vol. 488, Issue 7409
  • DOI: 10.1038/nature11336

The Microbe-Free Plant: Fact or Artifact?
journal, January 2011

A strong species?area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi
journal, June 2007

The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
journal, September 2013

  • Mendes, Rodrigo; Garbeva, Paolina; Raaijmakers, Jos M.
  • FEMS Microbiology Reviews, Vol. 37, Issue 5
  • DOI: 10.1111/1574-6976.12028

Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution
journal, August 2008

The soil microbiome influences grapevine-associated microbiota
text, January 2015

Improved plant resistance to drought is promoted by the root-associated microbiome as a water stress-dependent trait: Root bacteria protect plants from drought
journal, March 2014

  • Rolli, Eleonora; Marasco, Ramona; Vigani, Gianpiero
  • Environmental Microbiology, Vol. 17, Issue 2
  • DOI: 10.1111/1462-2920.12439

Feedstocks for Lignocellulosic Biofuels
journal, August 2010

  • Somerville, Cris; Youngs, Heather; Taylor, Caroline
  • Science, Vol. 329, Issue 5993, p. 790-792
  • DOI: 10.1126/science.1189268

Potential of Plants from the Genus Agave as Bioenergy Crops
journal, October 2011

Selection on soil microbiomes reveals reproducible impacts on plant function
journal, October 2014

  • Panke-Buisse, Kevin; Poole, Angela C.; Goodrich, Julia K.
  • The ISME Journal, Vol. 9, Issue 4
  • DOI: 10.1038/ismej.2014.196

Seasonal Community Succession of the Phyllosphere Microbiome
journal, March 2015

  • Copeland, Julia K.; Yuan, Lijie; Layeghifard, Mehdi
  • Molecular Plant-Microbe Interactions, Vol. 28, Issue 3
  • DOI: 10.1094/MPMI-10-14-0331-FI

Agave for tequila and biofuels: an economic assessment and potential opportunities: ECONOMIC ASSESSMENT AND OPPORTUNITIES OF AGAVE
journal, December 2010

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
journal, October 2013

The plant microbiome
journal, June 2013

Fungal Community Analysis by Large-Scale Sequencing of Environmental Samples
journal, September 2005

Diazotrophic potential among bacterial communities associated with wild and cultivated Agave species
journal, November 2014

  • Desgarennes, Damaris; Garrido, Etzel; Torres-Gomez, Miryam J.
  • FEMS Microbiology Ecology, Vol. 90, Issue 3
  • DOI: 10.1111/1574-6941.12438

Identification and Characterisation of Bacteria Causing Soft-rot in Agave tequilana
journal, March 2004

Agave proves to be a low recalcitrant lignocellulosic feedstock for biofuels production on semi-arid lands
journal, January 2014

  • Li, Hongjia; Pattathil, Sivakumar; Foston, Marcus B.
  • Biotechnology for Biofuels, Vol. 7, Issue 1
  • DOI: 10.1186/1754-6834-7-50

Genome-wide association study of Arabidopsis thaliana leaf microbial community
journal, November 2014

  • Horton, Matthew W.; Bodenhausen, Natacha; Beilsmith, Kathleen
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms6320

The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
journal, September 2013

  • Mendes, Rodrigo; Garbeva, Paolina; Raaijmakers, Jos M.
  • FEMS Microbiology Reviews, Vol. 37, Issue 5
  • DOI: 10.1111/1574-6976.12028

Agave as a biofuel feedstock in Australia: AGAVE IN AUSTRALIA
journal, December 2010

The importance of the microbiome of the plant holobiont
journal, February 2015

  • Vandenkoornhuyse, Philippe; Quaiser, Achim; Duhamel, Marie
  • New Phytologist, Vol. 206, Issue 4
  • DOI: 10.1111/nph.13312

Diversity and heritability of the maize rhizosphere microbiome under field conditions
journal, April 2013

  • Peiffer, J. A.; Spor, A.; Koren, O.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 16
  • DOI: 10.1073/pnas.1302837110

A Drought Resistance-Promoting Microbiome Is Selected by Root System under Desert Farming
journal, October 2012

Agaves of Continental North America
book, January 1982

    Sort by:
    [ × clear filter / sort ]

    Works referencing / citing this record:

    Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes
    journal, January 2019

    Rhizocompartments and environmental factors affect microbial composition and variation in native plants
    journal, June 2019

    Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes
    journal, January 2017

    • Wemheuer, Franziska; Kaiser, Kristin; Karlovsky, Petr
    • Scientific Reports, Vol. 7, Issue 1
    • DOI: 10.1038/srep40914

    Metacoder: An R package for visualization and manipulation of community taxonomic diversity data
    journal, February 2017

    • Foster, Zachary S. L.; Sharpton, Thomas J.; Grünwald, Niklaus J.
    • PLOS Computational Biology, Vol. 13, Issue 2
    • DOI: 10.1371/journal.pcbi.1005404

    The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity
    journal, February 2016

    • Fonseca-García, Citlali; Coleman-Derr, Devin; Garrido, Etzel
    • Frontiers in Microbiology, Vol. 7
    • DOI: 10.3389/fmicb.2016.00150

    Mycobiota of maize seeds revealed by rDNA ‐ ITS sequence analysis of samples with varying storage times
    journal, March 2018

    • Xing, Hui‐Qin; Ma, Jian‐Cang; Xu, Bing‐Liang
    • MicrobiologyOpen, Vol. 7, Issue 6
    • DOI: 10.1002/mbo3.609

    Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico
    journal, March 2019

    • Astudillo-Melgar, Fernando; Ochoa-Leyva, Adrián; Utrilla, José
    • Frontiers in Microbiology, Vol. 10
    • DOI: 10.3389/fmicb.2019.00531

    Rare Species Shift the Structure of Bacterial Communities Across Sphagnum Compartments in a Subalpine Peatland
    journal, January 2020

    Metabolic regulation of the maize rhizobiome by benzoxazinoids
    journal, February 2019

    • Cotton, T. E. Anne; Pétriacq, Pierre; Cameron, Duncan D.
    • The ISME Journal, Vol. 13, Issue 7
    • DOI: 10.1038/s41396-019-0375-2

    Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
    journal, October 2019

    • Brisson, Vanessa L.; Schmidt, Jennifer E.; Northen, Trent R.
    • Scientific Reports, Vol. 9, Issue 1
    • DOI: 10.1038/s41598-019-52148-y

    Characterization of Microbial Communities Populating the Inflorescences of Humulus lupulus L.
    journal, October 2019

    • Allen, Mary E.; Piefer, Andrew J.; Cole, Sean N.
    • Journal of the American Society of Brewing Chemists, Vol. 77, Issue 4
    • DOI: 10.1080/03610470.2019.1667739

    In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana
    posted_content, February 2018

    • Bartoli, Claudia; Frachon, Léa; Barret, Matthieu
    • bioRxiv
    • DOI: 10.1101/261602

    Native and Invading Yellow Starthistle ( Centaurea solstitialis ) Microbiomes Differ in Composition and Diversity of Bacteria
    journal, February 2019

    Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes
    journal, January 2019

    Plants Assemble Species Specific Bacterial Communities from Common Core Taxa in Three Arcto-Alpine Climate Zones
    journal, January 2017

    Structural plasticity in root-fungal symbioses: diverse interactions lead to improved plant fitness
    journal, December 2018

    • Kariman, Khalil; Barker, Susan Jane; Tibbett, Mark
    • PeerJ, Vol. 6
    • DOI: 10.7717/peerj.6030

    In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana
    journal, May 2018

    Distinct factors drive the assembly of quinoa-associated microbiomes along elevation
    journal, January 2020

    Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands
    journal, October 2019

    Genome Sequences of a Plant Beneficial Synthetic Bacterial Community Reveal Genetic Features for Successful Plant Colonization
    journal, August 2019

    • de Souza, Rafael Soares Correa; Armanhi, Jaderson Silveira Leite; Damasceno, Natália de Brito
    • Frontiers in Microbiology, Vol. 10
    • DOI: 10.3389/fmicb.2019.01779

    The effect of environment on the microbiome associated with the roots of a native woody plant under different climate types in China
    journal, March 2019

    • Chen, Peilin; Zhao, Meilin; Tang, Feng
    • Applied Microbiology and Biotechnology, Vol. 103, Issue 9
    • DOI: 10.1007/s00253-019-09747-6

    Deciphering the microbiome shift during fermentation of medicinal plants
    journal, September 2019

    Bacterial diversity and population dynamics during the fermentation of palm wine from Guerrero Mexico
    journal, November 2018

    • Astudillo-Melgar, Fernando; Ochoa-Leyva, Adrián; Utrilla, José
    • Frontiers in Microbiology
    • DOI: 10.1101/480038

    Native and invading yellow starthistle (Centaurea solstitialis) microbiomes differ in composition and diversity of bacteria
    posted_content, August 2018

    • Lu-Irving, Patricia; Harenčár, Julia; Sounart, Hailey
    • DOI: 10.1101/119917

    Conservation of Endophyte Bacterial Community Structure Across Two Panicum Grass Species
    journal, September 2019

    Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon
    journal, February 2019

    1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species
    journal, June 2018

    Fungal Communities of the Canola Rhizosphere: Keystone Species and Substantial Between-Year Variation of the Rhizosphere Microbiome
    journal, January 2020

    Interactions between plants and soil shaping the root microbiome under abiotic stress
    journal, October 2019

    • Hartman, Kyle; Tringe, Susannah G.
    • Biochemical Journal, Vol. 476, Issue 19
    • DOI: 10.1042/bcj20180615

    454-Pyrosequencing Reveals Variable Fungal Diversity Across Farming Systems
    journal, March 2016

    Native soils with their microbiotas elicit a state of alert in tomato plants
    journal, February 2018

    • Chialva, Matteo; Salvioli di Fossalunga, Alessandra; Daghino, Stefania
    • New Phytologist, Vol. 220, Issue 4
    • DOI: 10.1111/nph.15014

    Geographic variation in composition of metazoan parasite infracommunities in Galaxias maculatus Jenyns 1842 (Osmeriformes: Galaxiidae) in southern Chile (38-47° S)
    journal, April 2020

    • George-Nascimento, Mario; López-Rodríguez, Ruby; Górski, Konrad
    • Revista Chilena de Historia Natural, Vol. 93, Issue 1
    • DOI: 10.1186/s40693-020-00090-z

    A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application
    journal, September 2019

    Genome Sequences of a Plant Beneficial Synthetic Bacterial Community Reveal Genetic Features for Successful Plant Colonization
    journal, August 2019

    • de Souza, Rafael Soares Correa; Armanhi, Jaderson Silveira Leite; Damasceno, Natália de Brito
    • Frontiers in Microbiology, Vol. 10
    • DOI: 10.3389/fmicb.2019.01779

    Mycobiota of maize seeds revealed by rDNA ‐ ITS sequence analysis of samples with varying storage times
    journal, March 2018

    • Xing, Hui‐Qin; Ma, Jian‐Cang; Xu, Bing‐Liang
    • MicrobiologyOpen, Vol. 7, Issue 6
    • DOI: 10.1002/mbo3.609

    Native and invading yellow starthistle (Centaurea solstitialis) microbiomes differ in composition and diversity of bacteria
    posted_content, August 2018

    • Lu-Irving, Patricia; Harenčár, Julia; Sounart, Hailey
    • DOI: 10.1101/119917

    Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
    journal, October 2019

    • Brisson, Vanessa L.; Schmidt, Jennifer E.; Northen, Trent R.
    • Scientific Reports, Vol. 9, Issue 1
    • DOI: 10.1038/s41598-019-52148-y

    Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti
    journal, January 2020

    • Flores-Núñez, Víctor M.; Fonseca-García, Citlali; Desgarennes, Damaris
    • Frontiers in Microbiology, Vol. 10
    • DOI: 10.3389/fmicb.2019.03044

    Conservation of Endophyte Bacterial Community Structure Across Two Panicum Grass Species
    journal, September 2019

    Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria
    journal, April 2018

    • Xu, Ling; Naylor, Dan; Dong, Zhaobin
    • Proceedings of the National Academy of Sciences, Vol. 115, Issue 18
    • DOI: 10.1073/pnas.1717308115

    Microbiome Dynamics Associated With the Atacama Flowering Desert
    journal, January 2020

    • Araya, Juan Pablo; González, Máximo; Cardinale, Massimiliano
    • Frontiers in Microbiology, Vol. 10
    • DOI: 10.3389/fmicb.2019.03160

    Consistent bacterial selection by date palm root system across heterogeneous desert oasis agroecosystems
    journal, March 2019

    Building plant microbiome vault: a future biotechnological resource
    journal, September 2018

    Disentangling the factors shaping microbiota composition across the plant holobiont
    journal, December 2015

    The stage of soil development modulates rhizosphere effect along a High Arctic desert chronosequence
    journal, January 2018

    Drought and host selection influence bacterial community dynamics in the grass root microbiome
    journal, July 2017

    • Naylor, Dan; DeGraaf, Stephanie; Purdom, Elizabeth
    • The ISME Journal, Vol. 11, Issue 12
    • DOI: 10.1038/ismej.2017.118

    Exploration of Plant-Microbe Interactions for Sustainable Agriculture in CRISPR Era
    journal, August 2019

    Defining the root endosphere and rhizosphere microbiomes from the World Olive Germplasm Collection
    journal, December 2019

    • Fernández-González, Antonio J.; Villadas, Pablo J.; Gómez-Lama Cabanás, Carmen
    • Scientific Reports, Vol. 9, Issue 1
    • DOI: 10.1038/s41598-019-56977-9

    Temperature drives the assembly of endophytic communities' seasonal succession
    journal, July 2017

    • Campisano, Andrea; Albanese, Davide; Yousaf, Sohail
    • Environmental Microbiology, Vol. 19, Issue 8
    • DOI: 10.1111/1462-2920.13843

    Plant compartment and genetic variation drive microbiome composition in switchgrass roots
    journal, January 2019

    • Singer, Esther; Bonnette, Jason; Kenaley, Shawn C.
    • Environmental Microbiology Reports, Vol. 11, Issue 2
    • DOI: 10.1111/1758-2229.12727

    The aromatization of androstenedione by human adipose and liver tissue
    journal, December 1980

    Bacterial endophyte communities in Pinus flexilis are structured by host age, tissue type, and environmental factors
    journal, May 2018

    Dominant Groups of Potentially Active Bacteria Shared by Barley Seeds become Less Abundant in Root Associated Microbiome
    journal, June 2017

    Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition
    journal, October 2017

    • Almario, Juliana; Jeena, Ganga; Wunder, Jörg
    • Proceedings of the National Academy of Sciences, Vol. 114, Issue 44
    • DOI: 10.1073/pnas.1710455114

    Bacterial communities associated to Chilean altiplanic native plants from the Andean grasslands soils
    journal, January 2019

    • Fernández-Gómez, Beatriz; Maldonado, Jonathan; Mandakovic, Dinka
    • Scientific Reports, Vol. 9, Issue 1
    • DOI: 10.1038/s41598-018-37776-0

    Leaf-associated bacterial microbiota of coffee and its correlation with manganese and calcium levels on leaves
    journal, May 2018

    • Sousa, Leandro Pio de; Silva, Marcio José da; Costa Mondego, Jorge Maurício
    • Genetics and Molecular Biology, Vol. 41, Issue 2
    • DOI: 10.1590/1678-4685-gmb-2017-0255

    A Plant Growth-Promoting Microbial Soil Amendment Dynamically Alters the Strawberry Root Bacterial Microbiome
    journal, November 2019

    Host species identity in annual Brassicaceae has a limited effect on the assembly of root-endophytic fungal communities
    journal, September 2018

    Biostimulant Action of Protein Hydrolysates: Unraveling Their Effects on Plant Physiology and Microbiome
    journal, December 2017

    Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host
    journal, December 2018

    The Bacterial Microbiome of Meloidogyne-Based Disease Complex in Coffee and Tomato
    journal, February 2020

    • Lamelas, Araceli; Desgarennes, Damaris; López-Lima, Daniel
    • Frontiers in Plant Science, Vol. 11
    • DOI: 10.3389/fpls.2020.00136

    Epiphytic and Endophytic Bacteria on Olive Tree Phyllosphere: Exploring Tissue and Cultivar Effect
    journal, January 2020

    Root microbiota assembly and adaptive differentiation among European Arabidopsis populations
    journal, December 2019

    • Thiergart, Thorsten; Durán, Paloma; Ellis, Thomas
    • Nature Ecology & Evolution, Vol. 4, Issue 1
    • DOI: 10.1038/s41559-019-1063-3

    Plant Growth-Promoting Rhizobacteria: Context, Mechanisms of Action, and Roadmap to Commercialization of Biostimulants for Sustainable Agriculture
    journal, October 2018

    • Backer, Rachel; Rokem, J. Stefan; Ilangumaran, Gayathri
    • Frontiers in Plant Science, Vol. 9
    • DOI: 10.3389/fpls.2018.01473

    Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees
    journal, February 2017

    Assembly of root-associated microbial community of typical rice cultivars in different soil types
    journal, December 2019

    Field study reveals core plant microbiota and relative importance of their drivers: Core microbiota of field-grown sugarcane and their drivers
    journal, January 2018

    • Hamonts, Kelly; Trivedi, Pankaj; Garg, Anshu
    • Environmental Microbiology, Vol. 20, Issue 1
    • DOI: 10.1111/1462-2920.14031

    Insights into the functionality of endophytic actinobacteria with a focus on their biosynthetic potential and secondary metabolites production
    journal, September 2017

    Not only priming: Soil microbiota may protect tomato from root pathogens
    journal, April 2018

    Metacoder: An R package for visualization and manipulation of community taxonomic diversity data
    journal, February 2017

    • Foster, Zachary S. L.; Sharpton, Thomas J.; Grünwald, Niklaus J.
    • PLOS Computational Biology, Vol. 13, Issue 2
    • DOI: 10.1371/journal.pcbi.1005404

    Effect of floristic composition and configuration on plant root mycobiota: a landscape transposition at a small scale
    journal, November 2019

    • Mony, Cendrine; Brunellière, Philomène; Vannier, Nathan
    • New Phytologist, Vol. 225, Issue 4
    • DOI: 10.1111/nph.16262

    A Community-Based Culture Collection for Targeting Novel Plant Growth-Promoting Bacteria from the Sugarcane Microbiome
    journal, January 2018

    • Armanhi, Jaderson Silveira Leite; de Souza, Rafael Soares Correa; Damasceno, Natália de Brito
    • Frontiers in Plant Science, Vol. 8
    • DOI: 10.3389/fpls.2017.02191

    Desert plant bacteria reveal host influence and beneficial plant growth properties
    journal, December 2018

    Potentials and pitfalls in the analysis of bipartite networks to understand plant–microbe interactions in changing environments
    journal, October 2018

    • Bennett, Alison E.; Evans, Darren M.; Powell, Jeff R.
    • Functional Ecology, Vol. 33, Issue 1
    • DOI: 10.1111/1365-2435.13223

    Drought Stress and Root-Associated Bacterial Communities
    journal, January 2018

    Bacterial communities in the rhizosphere, phyllosphere and endosphere of tomato plants
    journal, November 2019

    Ecophylogeny of the endospheric root fungal microbiome of co-occurring Agrostis stolonifera
    journal, January 2017

    Plants exhibit significant effects on the rhizospheric microbiome across contrasting soils in tropical and subtropical China
    journal, July 2019

    • Xu, Shangqi; Tian, Lei; Chang, Chunling
    • FEMS Microbiology Ecology, Vol. 95, Issue 8
    • DOI: 10.1093/femsec/fiz100

    Fungal Endophytic Communities of Two Wild Rosa Varieties With Different Powdery Mildew Susceptibilities
    journal, October 2018

    Microbial interactions within the plant holobiont
    journal, March 2018

    Plant Phenotypic Traits Eventually Shape Its Microbiota: A Common Garden Test
    journal, November 2018

    Strengthening desert plant biotechnology research in the United Arab Emirates: a viewpoint
    journal, May 2018

    • Gairola, Sanjay; Al Shaer, Khawla I.; Al Harthi, Eman K.
    • Physiology and Molecular Biology of Plants, Vol. 24, Issue 4
    • DOI: 10.1007/s12298-018-0551-2

    Myxobacterial Response to Methyljasmonate Exposure Indicates Contribution to Plant Recruitment of Micropredators
    journal, January 2020

    • Adaikpoh, Barbara I.; Akbar, Shukria; Albataineh, Hanan
    • Frontiers in Microbiology, Vol. 11
    • DOI: 10.3389/fmicb.2020.00034

    Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies
    journal, May 2016

    Who lives in a fungus? The diversity, origins and functions of fungal endobacteria living in Mucoromycota
    journal, April 2017

    Microbial community composition but not diversity changes along succession in arctic sand dunes: Deschampsia flexuosa associated microbiomes
    journal, January 2017

    • Poosakkannu, Anbu; Nissinen, Riitta; Männistö, Minna
    • Environmental Microbiology, Vol. 19, Issue 2
    • DOI: 10.1111/1462-2920.13599

    Rhizospheric microbial communities associated with wild and cultivated frankincense producing Boswellia sacra tree
    journal, October 2017

    Soil compartment is a major determinant of the impact of simulated rainfall on desert microbiota: Microbial responses to watering desert soils
    journal, August 2016

    • Aslam, Shazia N.; Dumbrell, Alex J.; Sabir, Jamal S.
    • Environmental Microbiology, Vol. 18, Issue 12
    • DOI: 10.1111/1462-2920.13474

    Consistent host and organ occupancy of phyllosphere bacteria in a community of wild herbaceous plant species
    text, January 2020

    Broad-spectrum inhibition of Phytophthora infestans by fungal endophytes
    journal, March 2018

    • de Vries, Sophie; von Dahlen, Janina K.; Schnake, Anika
    • FEMS Microbiology Ecology, Vol. 94, Issue 4
    • DOI: 10.1093/femsec/fiy037

    Metabarcoding reveals that rhizospheric microbiota of Quercus pyrenaica is composed by a relatively small number of bacterial taxa highly abundant
    journal, February 2019

    • Lasa, Ana V.; Fernández-González, Antonio J.; Villadas, Pablo J.
    • Scientific Reports, Vol. 9, Issue 1
    • DOI: 10.1038/s41598-018-38123-z

    Microbiome Selection Could Spur Next-Generation Plant Breeding Strategies
    journal, December 2016

    Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition
    journal, October 2017

    • Almario, Juliana; Jeena, Ganga; Wunder, Jörg
    • Proceedings of the National Academy of Sciences, Vol. 114, Issue 44
    • DOI: 10.1073/pnas.1710455114

    Unique bacterial assembly, composition, and interactions in a parasitic plant and its host
    journal, January 2020

    • Fitzpatrick, Connor R.; Schneider, Adam C.
    • Journal of Experimental Botany, Vol. 71, Issue 6
    • DOI: 10.1093/jxb/erz572

    Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon
    journal, August 2018

    • Suarez-Moo, Pablo de Jesus; Vovides, Andrew P.; Griffith, M. Patrick
    • PLOS ONE
    • DOI: 10.1101/381798

    Leaf-associated bacterial microbiota of coffee and its correlation with manganese and calcium levels on leaves
    journal, May 2018

    • Sousa, Leandro Pio de; Silva, Marcio José da; Costa Mondego, Jorge Maurício
    • Genetics and Molecular Biology, Vol. 41, Issue 2
    • DOI: 10.1590/1678-4685-gmb-2017-0255

    Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies
    journal, May 2016

    Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent
    journal, April 2016

    Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere
    journal, May 2019

    Biostimulant Action of Protein Hydrolysates: Unraveling Their Effects on Plant Physiology and Microbiome
    journal, December 2017

    Microbiome Selection Could Spur Next-Generation Plant Breeding Strategies
    journal, December 2016

    Can dynamic network modelling be used to identify adaptive microbiomes?
    journal, December 2019

    Plant domestication and the assembly of bacterial and fungal communities associated with strains of the common sunflower, Helianthus annuus
    journal, November 2016

    • Leff, Jonathan W.; Lynch, Ryan C.; Kane, Nolan C.
    • New Phytologist, Vol. 214, Issue 1
    • DOI: 10.1111/nph.14323

    The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome
    journal, February 2018

    Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon
    journal, August 2018

    • Suarez-Moo, Pablo de Jesus; Vovides, Andrew P.; Griffith, M. Patrick
    • PLOS ONE
    • DOI: 10.1101/381798

    Relative genetic diversity of the rare and endangered Agave shawii ssp. shawii and associated soil microbes within a southern California ecological preserve
    journal, January 2021

    • Vu, Jeanne P.; Vasquez, Miguel F.; Feng, Zuying
    • Ecology and Evolution, Vol. 11, Issue 4
    • DOI: 10.1002/ece3.7172

    Genomic features of bacterial adaptation to plants
    journal, December 2017

    • Levy, Asaf; Salas Gonzalez, Isai; Mittelviefhaus, Maximilian
    • Nature Genetics, Vol. 50, Issue 1
    • DOI: 10.1038/s41588-017-0012-9

    Plant‐mediated effects of soil phosphorus on the root‐associated fungal microbiota in Arabidopsis thaliana
    journal, November 2018

    • Fabiańska, Izabela; Gerlach, Nina; Almario, Juliana
    • New Phytologist, Vol. 221, Issue 4
    • DOI: 10.1111/nph.15538

    Plant Phenotypic Traits Eventually Shape Its Microbiota: A Common Garden Test
    journal, November 2018

    Microbiome of the Black-Lipped Pearl Oyster Pinctada margaritifera, a Multi-Tissue Description With Functional Profiling
    journal, July 2019

    Bioprospecting for fungi with potential pathogenic activity on leaves of Agave tequilana Weber var. Azul
    journal, March 2019

    • Campos‐Rivero, Gerardo; Sánchez‐Teyer, Lorenzo F.; De la Cruz‐Arguijo, Erika A.
    • Journal of Phytopathology, Vol. 167, Issue 5
    • DOI: 10.1111/jph.12797

    Assessment of functional and structural changes of soil fungal and oomycete communities in holm oak declined dehesas through metabarcoding analysis
    journal, March 2019

    • Ruiz Gómez, Francisco J.; Navarro-Cerrillo, Rafael M.; Pérez-de-Luque, Alejandro
    • Scientific Reports, Vol. 9, Issue 1
    • DOI: 10.1038/s41598-019-41804-y

    Plant‐mediated effects of soil phosphorus on the root‐associated fungal microbiota in Arabidopsis thaliana
    journal, November 2018

    • Fabiańska, Izabela; Gerlach, Nina; Almario, Juliana
    • New Phytologist, Vol. 221, Issue 4
    • DOI: 10.1111/nph.15538

    Revegetation on abandoned salt ponds relieves the seasonal fluctuation of soil microbiomes
    journal, June 2019

    Unravelling the virome in birch: RNA-Seq reveals a complex of known and novel viruses
    journal, June 2020

    A novel proof of concept for capturing the diversity of endophytic fungi preserved in herbarium specimens
    journal, November 2018

    • Daru, Barnabas H.; Bowman, Elizabeth A.; Pfister, Donald H.
    • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 374, Issue 1763
    • DOI: 10.1098/rstb.2017.0395

    Niche differentiation in the rhizosphere and endosphere fungal microbiome of wild Paris polyphylla Sm.
    journal, January 2020

    Microbiome Dynamics Associated With the Atacama Flowering Desert
    journal, January 2020

    • Araya, Juan Pablo; González, Máximo; Cardinale, Massimiliano
    • Frontiers in Microbiology, Vol. 10
    • DOI: 10.3389/fmicb.2019.03160

    Bacterial communities in the rhizosphere, phyllosphere and endosphere of tomato plants
    journal, November 2019

    Rhizosphere Microbiome of Arid Land Medicinal Plants and Extra Cellular Enzymes Contribute to Their Abundance
    journal, February 2020

    Metabarcoding reveals that rhizospheric microbiota of Quercus pyrenaica is composed by a relatively small number of bacterial taxa highly abundant
    journal, February 2019

    • Lasa, Ana V.; Fernández-González, Antonio J.; Villadas, Pablo J.
    • Scientific Reports, Vol. 9, Issue 1
    • DOI: 10.1038/s41598-018-38123-z

    Consistent bacterial selection by date palm root system across heterogeneous desert oasis agroecosystems
    journal, March 2019

    Soil productivity and structure of bacterial and fungal communities in unfertilized arable soil
    journal, September 2018

    Unique bacterial assembly, composition, and interactions in a parasitic plant and its host
    journal, January 2020

    • Fitzpatrick, Connor R.; Schneider, Adam C.
    • Journal of Experimental Botany, Vol. 71, Issue 6
    • DOI: 10.1093/jxb/erz572

    Defining the root endosphere and rhizosphere microbiomes from the World Olive Germplasm Collection
    journal, December 2019

    • Fernández-González, Antonio J.; Villadas, Pablo J.; Gómez-Lama Cabanás, Carmen
    • Scientific Reports, Vol. 9, Issue 1
    • DOI: 10.1038/s41598-019-56977-9

    Dominant Groups of Potentially Active Bacteria Shared by Barley Seeds become Less Abundant in Root Associated Microbiome
    journal, June 2017

    Plant Growth-Promoting Rhizobacteria: Context, Mechanisms of Action, and Roadmap to Commercialization of Biostimulants for Sustainable Agriculture
    journal, October 2018

    • Backer, Rachel; Rokem, J. Stefan; Ilangumaran, Gayathri
    • Frontiers in Plant Science, Vol. 9
    • DOI: 10.3389/fpls.2018.01473

    Insights into the functionality of endophytic actinobacteria with a focus on their biosynthetic potential and secondary metabolites production
    journal, September 2017

    Bacterial communities associated to Chilean altiplanic native plants from the Andean grasslands soils
    journal, January 2019

    • Fernández-Gómez, Beatriz; Maldonado, Jonathan; Mandakovic, Dinka
    • Scientific Reports, Vol. 9, Issue 1
    • DOI: 10.1038/s41598-018-37776-0

    Prospecting the characteristics and significance of the phyllosphere microbiome
    journal, March 2018

    Environmental filtering structures fungal endophyte communities in tree bark
    journal, October 2019

    • Pellitier, Peter T.; Zak, Donald R.; Salley, Sydney O.
    • Molecular Ecology, Vol. 28, Issue 23
    • DOI: 10.1111/mec.15237

    Desert plant bacteria reveal host influence and beneficial plant growth properties
    journal, December 2018

    A Community-Based Culture Collection for Targeting Novel Plant Growth-Promoting Bacteria from the Sugarcane Microbiome
    journal, January 2018

    • Armanhi, Jaderson Silveira Leite; de Souza, Rafael Soares Correa; Damasceno, Natália de Brito
    • Frontiers in Plant Science, Vol. 8
    • DOI: 10.3389/fpls.2017.02191

    Broad-spectrum inhibition of Phytophthora infestans by fungal endophytes
    journal, March 2018

    • de Vries, Sophie; von Dahlen, Janina K.; Schnake, Anika
    • FEMS Microbiology Ecology, Vol. 94, Issue 4
    • DOI: 10.1093/femsec/fiy037

    Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host
    journal, December 2018

    Influence of phylogenetic conservatism and trait convergence on the interactions between fungal root endophytes and plants
    journal, November 2016

    • Kia, Sevda Haghi; Glynou, Kyriaki; Nau, Thomas
    • The ISME Journal, Vol. 11, Issue 3
    • DOI: 10.1038/ismej.2016.140

    A Friend in Need (of Nutrients) Is a…
    journal, April 2016

    Back to the Origin: In Situ Studies Are Needed to Understand Selection during Crop Diversification
    journal, October 2017

    • Chen, Yolanda H.; Shapiro, Lori R.; Benrey, Betty
    • Frontiers in Ecology and Evolution, Vol. 5
    • DOI: 10.3389/fevo.2017.00125

    The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity
    journal, February 2016

    • Fonseca-García, Citlali; Coleman-Derr, Devin; Garrido, Etzel
    • Frontiers in Microbiology, Vol. 7
    • DOI: 10.3389/fmicb.2016.00150

    Draft genome sequence and detailed analysis of Pantoea eucrina strain Russ and implication for opportunistic pathogenesis
    journal, December 2016

    Metabolic regulation of the maize rhizobiome by benzoxazinoids
    journal, February 2019

    • Cotton, T. E. Anne; Pétriacq, Pierre; Cameron, Duncan D.
    • The ISME Journal, Vol. 13, Issue 7
    • DOI: 10.1038/s41396-019-0375-2

    A suite of rare microbes interacts with a dominant, heritable, fungal endophyte to influence plant trait expression
    journal, March 2021

    Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico
    journal, March 2019

    • Astudillo-Melgar, Fernando; Ochoa-Leyva, Adrián; Utrilla, José
    • Frontiers in Microbiology, Vol. 10
    • DOI: 10.3389/fmicb.2019.00531

    Microbial interactions within the plant holobiont
    journal, March 2018

    Putting the Mess in Order: Aspergillus welwitschiae (and Not A. niger) Is the Etiological Agent of Sisal Bole Rot Disease in Brazil
    journal, June 2018

    • Duarte, Elizabeth A. A.; Damasceno, Caroline L.; de Oliveira, Thiago A. S.
    • Frontiers in Microbiology, Vol. 9
    • DOI: 10.3389/fmicb.2018.01227
      Sort by:
      [ × clear filter / sort ]

      Similar Records in DOE PAGES and OSTI.GOV collections: