Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring
Abstract
Thermotoga thermarum Windberger et al. 1989 is a member to the genomically well characterized genus Thermotoga in the phylum 'Thermotogae'. T. thermarum is of interest for its origin from a continental solfataric spring vs. predominantly marine oil reservoirs of other members of the genus. The genome of strain LA3T also provides fresh data for the phylogenomic positioning of the (hyper-)thermophilic bacteria. T. thermarum strain LA3T is the fourth sequenced genome of a type strain from the genus Thermotoga, and the sixth in the family Thermotogaceae to be formally described in a publication. Phylogenetic analyses do not reveal significant discrepancies between the current classification of the group, 16S rRNA gene data and whole-genome sequences. Nevertheless, T. thermarum significantly differs from other Thermotoga species regarding its iron-sulfur cluster synthesis, as it contains only a minimal set of the necessary proteins. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,039,943 bp long chromosome with its 2,015 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
- Authors:
-
more »
- Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- HZI - Helmholtz Centre for Infection Research, Braunschweig (Germany)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California Davis Genome Center, Davis, CA (United States)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); The Univ. of Queensland, Brisbane (Australia)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)
- St. Petersburg State Univ., St. Petersburg (Russia); St. Petersburg Academic Univ., St. Petersburg (Russia)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1378618
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 9; Journal Issue: 3; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES; anaerobic; motile; thermophilic; chemoorganotrophic; solfataric spring; outer sheath-like structure; Thermotogaceae; GEBA
Citation Formats
Goker, Markus, Spring, Stefan, Scheuner, Carmen, Anderson, Iain, Zeytun, Ahmet, Nolan, Matt, Lucas, Susan, Tice, Hope, Del Rio, Tijana Glavina, Cheng, Jan -Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne A., Pitluck, Sam, Liolios, Konstantinos, Mavromatis, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-juan, Jeffries, Cynthia D., Rohde, Manfred, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans -Peter, and Lapidus, Alla. Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring. United States: N. p., 2014.
Web. doi:10.4056/sigs.3016383.
Goker, Markus, Spring, Stefan, Scheuner, Carmen, Anderson, Iain, Zeytun, Ahmet, Nolan, Matt, Lucas, Susan, Tice, Hope, Del Rio, Tijana Glavina, Cheng, Jan -Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne A., Pitluck, Sam, Liolios, Konstantinos, Mavromatis, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-juan, Jeffries, Cynthia D., Rohde, Manfred, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans -Peter, & Lapidus, Alla. Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring. United States. https://doi.org/10.4056/sigs.3016383
Goker, Markus, Spring, Stefan, Scheuner, Carmen, Anderson, Iain, Zeytun, Ahmet, Nolan, Matt, Lucas, Susan, Tice, Hope, Del Rio, Tijana Glavina, Cheng, Jan -Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne A., Pitluck, Sam, Liolios, Konstantinos, Mavromatis, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-juan, Jeffries, Cynthia D., Rohde, Manfred, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans -Peter, and Lapidus, Alla. Sun .
"Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring". United States. https://doi.org/10.4056/sigs.3016383. https://www.osti.gov/servlets/purl/1378618.
@article{osti_1378618,
title = {Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring},
author = {Goker, Markus and Spring, Stefan and Scheuner, Carmen and Anderson, Iain and Zeytun, Ahmet and Nolan, Matt and Lucas, Susan and Tice, Hope and Del Rio, Tijana Glavina and Cheng, Jan -Fang and Han, Cliff and Tapia, Roxanne and Goodwin, Lynne A. and Pitluck, Sam and Liolios, Konstantinos and Mavromatis, Konstantinos and Pagani, Ioanna and Ivanova, Natalia and Mikhailova, Natalia and Pati, Amrita and Chen, Amy and Palaniappan, Krishna and Land, Miriam and Hauser, Loren and Chang, Yun-juan and Jeffries, Cynthia D. and Rohde, Manfred and Detter, John C. and Woyke, Tanja and Bristow, James and Eisen, Jonathan A. and Markowitz, Victor and Hugenholtz, Philip and Kyrpides, Nikos C. and Klenk, Hans -Peter and Lapidus, Alla},
abstractNote = {Thermotoga thermarum Windberger et al. 1989 is a member to the genomically well characterized genus Thermotoga in the phylum 'Thermotogae'. T. thermarum is of interest for its origin from a continental solfataric spring vs. predominantly marine oil reservoirs of other members of the genus. The genome of strain LA3T also provides fresh data for the phylogenomic positioning of the (hyper-)thermophilic bacteria. T. thermarum strain LA3T is the fourth sequenced genome of a type strain from the genus Thermotoga, and the sixth in the family Thermotogaceae to be formally described in a publication. Phylogenetic analyses do not reveal significant discrepancies between the current classification of the group, 16S rRNA gene data and whole-genome sequences. Nevertheless, T. thermarum significantly differs from other Thermotoga species regarding its iron-sulfur cluster synthesis, as it contains only a minimal set of the necessary proteins. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,039,943 bp long chromosome with its 2,015 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.},
doi = {10.4056/sigs.3016383},
journal = {Standards in Genomic Sciences},
number = 3,
volume = 9,
place = {United States},
year = {Sun Jun 15 00:00:00 EDT 2014},
month = {Sun Jun 15 00:00:00 EDT 2014}
}
Web of Science
Works referenced in this record:
Building Fe–S proteins: bacterial strategies
journal, June 2010
- Py, Béatrice; Barras, Frédéric
- Nature Reviews Microbiology, Vol. 8, Issue 6
Thermococcoides shengliensis gen. nov., sp. nov., a new member of the order Thermotogales isolated from oil-production fluid
journal, August 2009
- Feng, Y.; Cheng, L.; Zhang, X.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 4
Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 22
journal, October 1986
- None, None
- International Journal of Systematic Bacteriology, Vol. 36, Issue 4, p. 573-576
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
journal, July 2006
- DeSantis, T. Z.; Hugenholtz, P.; Larsen, N.
- Applied and Environmental Microbiology, Vol. 72, Issue 7, p. 5069-5072
Structure, Function, and Formation of Biological Iron-Sulfur Clusters
journal, June 2005
- Johnson, Deborah C.; Dean, Dennis R.; Smith, Archer D.
- Annual Review of Biochemistry, Vol. 74, Issue 1
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
journal, April 2000
- Castresana, J.
- Molecular Biology and Evolution, Vol. 17, Issue 4
Kosmotoga olearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid
journal, July 2009
- DiPippo, J. L.; Nesbo, C. L.; Dahle, H.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 12
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
journal, March 2009
- Zhaxybayeva, O.; Swithers, K. S.; Lapierre, P.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 14
List of new names and new combinations previously effectively, but not validly, published
journal, January 2011
- None, None
- International Journal of Systematic and Evolutionary Microbiology, Vol. 61, Issue 1, p. 1-3
Codivergence of Mycoviruses with Their Hosts
journal, July 2011
- Göker, Markus; Scheuner, Carmen; Klenk, Hans-Peter
- PLoS ONE, Vol. 6, Issue 7
Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta
journal, May 2012
- Abt, Birte; Han, Cliff; Scheuner, Carmen
- Standards in Genomic Sciences, Vol. 6, Issue 2
Kosmotoga arenicorallina sp. nov. a thermophilic and obligately anaerobic heterotroph isolated from a shallow hydrothermal system occurring within a coral reef, southern part of the Yaeyama Archipelago, Japan, reclassification of Thermococcoides shengliensis as Kosmotoga shengliensis comb. nov., and emended description of the genus Kosmotoga
journal, August 2010
- Nunoura, Takuro; Hirai, Miho; Imachi, Hiroyuki
- Archives of Microbiology, Vol. 192, Issue 10
List of Bacterial Names with Standing in Nomenclature: a Folder Available on the Internet
journal, April 1997
- EuzéBy, J. P.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 47, Issue 2
Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects
journal, May 2013
- Göker, Markus; Klenk, Hans-Peter
- Standards in Genomic Sciences, Vol. 8, Issue 2
Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes
journal, May 2011
- Anderson, Iain; Scheuner, Carmen; Göker, Markus
- PLoS ONE, Vol. 6, Issue 5
Complete genome sequence of Isosphaera pallida type strain (IS1BT)
journal, February 2011
- Göker, Markus; Cleland, David; Saunders, Elizabeth
- Standards in Genomic Sciences, Vol. 4, Issue 1
Basic local alignment search tool
journal, October 1990
- Altschul, Stephen F.; Gish, Warren; Miller, Webb
- Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410
The minimum information about a genome sequence (MIGS) specification
journal, May 2008
- Field, Dawn; Garrity, George; Gray, Tanya
- Nature Biotechnology, Vol. 26, Issue 5
A Rapid Bootstrap Algorithm for the RAxML Web Servers
journal, October 2008
- Stamatakis, Alexandros; Hoover, Paul; Rougemont, Jacques
- Systematic Biology, Vol. 57, Issue 5
Gene Ontology: tool for the unification of biology
journal, May 2000
- Ashburner, Michael; Ball, Catherine A.; Blake, Judith A.
- Nature Genetics, Vol. 25, Issue 1
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
journal, December 2011
- Pagani, I.; Liolios, K.; Jansson, J.
- Nucleic Acids Research, Vol. 40, Issue D1
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
journal, June 1990
- Woese, C. R.; Kandler, O.; Wheelis, M. L.
- Proceedings of the National Academy of Sciences, Vol. 87, Issue 12
IMG: the integrated microbial genomes database and comparative analysis system
journal, December 2011
- Markowitz, V. M.; Chen, I. -M. A.; Palaniappan, K.
- Nucleic Acids Research, Vol. 40, Issue D1
Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010
- Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F.
- BMC Bioinformatics, Vol. 11, Issue 1
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
journal, May 1999
- Nelson, Karen E.; Clayton, Rebecca A.; Gill, Steven R.
- Nature, Vol. 399, Issue 6734
SufD and SufC ATPase Activity Are Required for Iron Acquisition during in Vivo Fe-S Cluster Formation on SufB
journal, November 2010
- Saini, Avneesh; Mapolelo, Daphne T.; Chahal, Harsimranjit K.
- Biochemistry, Vol. 49, Issue 43
Structure of a hyperthermophilic tungstopterin enzyme, aldehyde ferredoxin oxidoreductase
journal, March 1995
- Chan, M.; Mukund, S.; Kletzin, A.
- Science, Vol. 267, Issue 5203
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
journal, January 2010
- Auch, Alexander F.; von Jan, Mathias; Klenk, Hans-Peter
- Standards in Genomic Sciences, Vol. 2, Issue 1
Two transporters, TogT and TogMNAB, are responsible for oligogalacturonide uptake in Erwinia chrysanthemi 3937: TogT oligogalacturonide transporter
journal, September 2001
- Hugouvieux-Cotte-Pattat, Nicole; Reverchon, Sylvie
- Molecular Microbiology, Vol. 41, Issue 5
SufU Is an Essential Iron-Sulfur Cluster Scaffold Protein in Bacillus subtilis
journal, January 2010
- Albrecht, A. G.; Netz, D. J. A.; Miethke, M.
- Journal of Bacteriology, Vol. 192, Issue 6
Multiple sequence alignment using partial order graphs
journal, March 2002
- Lee, C.; Grasso, C.; Sharlow, M. F.
- Bioinformatics, Vol. 18, Issue 3
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
journal, February 2008
- Zerbino, D. R.; Birney, E.
- Genome Research, Vol. 18, Issue 5
En route to a genome-based classification of Archaea and Bacteria?
journal, June 2010
- Klenk, H. -P.; Göker, M.
- Systematic and Applied Microbiology, Vol. 33, Issue 4
Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 41
journal, April 1992
- None, None
- International Journal of Systematic Bacteriology, Vol. 42, Issue 2, p. 327-328
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
journal, December 2009
- Wu, Dongying; Hugenholtz, Philip; Mavromatis, Konstantinos
- Nature, Vol. 462, Issue 7276
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
journal, May 2010
- Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia
- Nature Methods, Vol. 7, Issue 6
An empirical test of the midpoint rooting method: A TEST FOR THE MIDPOINT ROOTING METHOD
journal, December 2007
- Hess, Pablo N.; De Moraes Russo, Claudia A.
- Biological Journal of the Linnean Society, Vol. 92, Issue 4
Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90�C
journal, May 1986
- Huber, Robert; Langworthy, Thomas A.; K�nig, Helmut
- Archives of Microbiology, Vol. 144, Issue 4
Thermotoga thermarum sp. nov. and Thermotoga neapolitana occurring in African continental solfataric springs
journal, May 1989
- Windberger, Elke; Huber, Robert; Trincone, Antonio
- Archives of Microbiology, Vol. 151, Issue 6
En route to a genome-based classification of Archaea and Bacteria?
journal, June 2010
- Klenk, H. -P.; Göker, M.
- Systematic and Applied Microbiology, Vol. 33, Issue 4
SufD and SufC ATPase Activity Are Required for Iron Acquisition during in Vivo Fe-S Cluster Formation on SufB
journal, November 2010
- Saini, Avneesh; Mapolelo, Daphne T.; Chahal, Harsimranjit K.
- Biochemistry, Vol. 49, Issue 43
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
journal, May 1999
- Nelson, Karen E.; Clayton, Rebecca A.; Gill, Steven R.
- Nature, Vol. 399, Issue 6734
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
journal, December 2009
- Wu, Dongying; Hugenholtz, Philip; Mavromatis, Konstantinos
- Nature, Vol. 462, Issue 7276
The minimum information about a genome sequence (MIGS) specification
journal, May 2008
- Field, Dawn; Garrity, George; Gray, Tanya
- Nature Biotechnology, Vol. 26, Issue 5
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
journal, May 2010
- Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia
- Nature Methods, Vol. 7, Issue 6
Dietary palmitic acid promotes a prometastatic memory via Schwann cells
journal, November 2021
- Pascual, Gloria; Domínguez, Diana; Elosúa-Bayes, Marc
- Nature, Vol. 599, Issue 7885
Two transporters, TogT and TogMNAB, are responsible for oligogalacturonide uptake in Erwinia chrysanthemi 3937: TogT oligogalacturonide transporter
journal, September 2001
- Hugouvieux-Cotte-Pattat, Nicole; Reverchon, Sylvie
- Molecular Microbiology, Vol. 41, Issue 5
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
journal, March 2009
- Zhaxybayeva, O.; Swithers, K. S.; Lapierre, P.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 14
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
journal, June 1990
- Woese, C. R.; Kandler, O.; Wheelis, M. L.
- Proceedings of the National Academy of Sciences, Vol. 87, Issue 12
Localization of Ubiquinone-8 in the Na + -pumping NADH:Quinone Oxidoreductase from Vibrio cholerae
journal, September 2011
- Casutt, Marco S.; Nedielkov, Ruslan; Wendelspiess, Severin
- Journal of Biological Chemistry, Vol. 286, Issue 46
A Rapid Bootstrap Algorithm for the RAxML Web Servers
journal, October 2008
- Stamatakis, Alexandros; Hoover, Paul; Rougemont, Jacques
- Systematic Biology, Vol. 57, Issue 5
The DNA Bank Network: The Start from a German Initiative
journal, March 2011
- Gemeinholzer, Birgit; Dröge, Gabriele; Zetzsche, Holger
- Biopreservation and Biobanking, Vol. 9, Issue 1
Multiple sequence alignment using partial order graphs
journal, March 2002
- Lee, C.; Grasso, C.; Sharlow, M. F.
- Bioinformatics, Vol. 18, Issue 3
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
journal, December 2011
- Pagani, I.; Liolios, K.; Jansson, J.
- Nucleic Acids Research, Vol. 40, Issue D1
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
journal, April 2000
- Castresana, J.
- Molecular Biology and Evolution, Vol. 17, Issue 4
List of Bacterial Names with Standing in Nomenclature: a Folder Available on the Internet
journal, April 1997
- EuzéBy, J. P.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 47, Issue 2
Kosmotoga olearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid
journal, July 2009
- DiPippo, J. L.; Nesbo, C. L.; Dahle, H.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 12
Thermococcoides shengliensis gen. nov., sp. nov., a new member of the order Thermotogales isolated from oil-production fluid
journal, August 2009
- Feng, Y.; Cheng, L.; Zhang, X.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 4
Valiation List no. 117: List of new names and new combinations previously effectively, but not validly, published
journal, September 2007
- None, None
- International Journal of Systematic and Evolutionary Microbiology, Vol. 57, Issue 9, p. 1933-1934
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
journal, February 2008
- Zerbino, D. R.; Birney, E.
- Genome Research, Vol. 18, Issue 5
Structure of a hyperthermophilic tungstopterin enzyme, aldehyde ferredoxin oxidoreductase
journal, March 1995
- Chan, M.; Mukund, S.; Kletzin, A.
- Science, Vol. 267, Issue 5203
Genome Sequence of Kosmotoga olearia Strain TBF 19.5.1, a Thermophilic Bacterium with a Wide Growth Temperature Range, Isolated from the Troll B Oil Platform in the North Sea
journal, September 2011
- Swithers, K. S.; DiPippo, J. L.; Bruce, D. C.
- Journal of Bacteriology, Vol. 193, Issue 19
The Metal Permease ZupT from Escherichia coli Is a Transporter with a Broad Substrate Spectrum
journal, February 2005
- Grass, G.; Franke, S.; Taudte, N.
- Journal of Bacteriology, Vol. 187, Issue 5
Structure, Function, and Formation of Biological Iron-Sulfur Clusters
journal, June 2005
- Johnson, Deborah C.; Dean, Dennis R.; Smith, Archer D.
- Annual Review of Biochemistry, Vol. 74, Issue 1
Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010
- Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F.
- BMC Bioinformatics, Vol. 11, Issue 1
Codivergence of Mycoviruses with Their Hosts
journal, July 2011
- Göker, Markus; Scheuner, Carmen; Klenk, Hans-Peter
- PLoS ONE, Vol. 6, Issue 7
Complete genome sequence of Isosphaera pallida type strain (IS1BT)
journal, February 2011
- Göker, Markus; Cleland, David; Saunders, Elizabeth
- Standards in Genomic Sciences, Vol. 4, Issue 1
Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta
journal, May 2012
- Abt, Birte; Han, Cliff; Scheuner, Carmen
- Standards in Genomic Sciences, Vol. 6, Issue 2
Works referencing / citing this record:
Genome-Guided Analysis of Clostridium ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate-Oxidising Bacteria
journal, April 2018
- Manzoor, Shahid; Schnürer, Anna; Bongcam-Rudloff, Erik
- Genes, Vol. 9, Issue 4
Exemplar Abstract for Thermotoga thermarum Windberger et al. 1992 and Pseudothermotoga thermarum (Windberger et al. 1992) Bhandari and Gupta 2014.
dataset, January 2013
- Parker, Charles Thomas; Taylor, Dorothea; Garrity, George M.
- NamesforLife
Genome-Guided Analysis of Clostridium ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate-Oxidising Bacteria
journal, April 2018
- Manzoor, Shahid; Schnürer, Anna; Bongcam-Rudloff, Erik
- Genes, Vol. 9, Issue 4