Design and Development of Highly Potent HIV-1 Protease Inhibitors with a Crown-Like Oxotricyclic Core as the P2-Ligand To Combat Multidrug-Resistant HIV Variants
Abstract
Design, synthesis, and evaluation of a new class of exceptionally potent HIV-1 protease inhibitors are reported. Inhibitor 5 displayed superior antiviral activity and drug-resistance profiles. In fact, this inhibitor showed several orders of magnitude improved antiviral activity over the FDA approved drug darunavir. This inhibitor incorporates an unprecedented 6–5–5 ring-fused crown-like tetrahydropyranofuran as the P2 ligand and an aminobenzothiazole as the P2' ligand with the (R)-hydroxyethylsulfonamide isostere. The crown-like P2 ligand for this inhibitor has been synthesized efficiently in an optically active form using a chiral Diels–Alder catalyst providing a key intermediate in high enantiomeric purity. Furthermore, two high resolution X-ray structures of inhibitor-bound HIV-1 protease revealed extensive interactions with the backbone atoms of HIV-1 protease and provided molecular insight into the binding properties of these new inhibitors.
- Authors:
-
- Purdue Univ., West Lafayette, IN (United States)
- Kumamoto Univ. Graduate School of Biomedical Sciences (Japan); Kumamoto Health Science Univ. (Japan); National Inst. of Health (NIH), Bethesda, MD (United States)
- Kumamoto Univ. Graduate School of Biomedical Sciences (Japan); National Center for Global Health and Medicine Research Inst., Tokyo (Japan)
- Georgia State Univ., Atlanta, GA (United States)
- National Inst. of Health (NIH), Bethesda, MD (United States)
- Kumamoto Univ. Graduate School of Biomedical Sciences (Japan); National Center for Global Health and Medicine Research Inst., Tokyo (Japan); National Inst. of Health (NIH), Bethesda, MD (United States)
- Publication Date:
- Research Org.:
- Argonne National Laboratory (ANL), Argonne, IL (United States)
- Sponsoring Org.:
- National Inst. of Health; Intramural Research Program of the Center for Cancer Research; National Cancer Inst.
- OSTI Identifier:
- 1368286
- Grant/Contract Number:
- GM53386; GM62920; W-31-109-Eng-38
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Medicinal Chemistry
- Additional Journal Information:
- Journal Volume: 60; Journal Issue: 10; Journal ID: ISSN 0022-2623
- Publisher:
- American Chemical Society (ACS)
- Country of Publication:
- United States
- Language:
- ENGLISH
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Antimicrobial agents; Peptides and proteins; Ligands; Inhibitors; Noncovalent interactions
Citation Formats
Ghosh, Arun K., Rao, Kalapala Venkateswara, Nyalapatla, Prasanth R., Osswald, Heather L., Martyr, Cuthbert D., Aoki, Manabu, Hayashi, Hironori, Agniswamy, Johnson, Wang, Yuan-Fang, Bulut, Haydar, Das, Debananda, Weber, Irene T., and Mitsuya, Hiroaki. Design and Development of Highly Potent HIV-1 Protease Inhibitors with a Crown-Like Oxotricyclic Core as the P2-Ligand To Combat Multidrug-Resistant HIV Variants. United States: N. p., 2017.
Web. doi:10.1021/acs.jmedchem.7b00172.
Ghosh, Arun K., Rao, Kalapala Venkateswara, Nyalapatla, Prasanth R., Osswald, Heather L., Martyr, Cuthbert D., Aoki, Manabu, Hayashi, Hironori, Agniswamy, Johnson, Wang, Yuan-Fang, Bulut, Haydar, Das, Debananda, Weber, Irene T., & Mitsuya, Hiroaki. Design and Development of Highly Potent HIV-1 Protease Inhibitors with a Crown-Like Oxotricyclic Core as the P2-Ligand To Combat Multidrug-Resistant HIV Variants. United States. https://doi.org/10.1021/acs.jmedchem.7b00172
Ghosh, Arun K., Rao, Kalapala Venkateswara, Nyalapatla, Prasanth R., Osswald, Heather L., Martyr, Cuthbert D., Aoki, Manabu, Hayashi, Hironori, Agniswamy, Johnson, Wang, Yuan-Fang, Bulut, Haydar, Das, Debananda, Weber, Irene T., and Mitsuya, Hiroaki. Tue .
"Design and Development of Highly Potent HIV-1 Protease Inhibitors with a Crown-Like Oxotricyclic Core as the P2-Ligand To Combat Multidrug-Resistant HIV Variants". United States. https://doi.org/10.1021/acs.jmedchem.7b00172. https://www.osti.gov/servlets/purl/1368286.
@article{osti_1368286,
title = {Design and Development of Highly Potent HIV-1 Protease Inhibitors with a Crown-Like Oxotricyclic Core as the P2-Ligand To Combat Multidrug-Resistant HIV Variants},
author = {Ghosh, Arun K. and Rao, Kalapala Venkateswara and Nyalapatla, Prasanth R. and Osswald, Heather L. and Martyr, Cuthbert D. and Aoki, Manabu and Hayashi, Hironori and Agniswamy, Johnson and Wang, Yuan-Fang and Bulut, Haydar and Das, Debananda and Weber, Irene T. and Mitsuya, Hiroaki},
abstractNote = {Design, synthesis, and evaluation of a new class of exceptionally potent HIV-1 protease inhibitors are reported. Inhibitor 5 displayed superior antiviral activity and drug-resistance profiles. In fact, this inhibitor showed several orders of magnitude improved antiviral activity over the FDA approved drug darunavir. This inhibitor incorporates an unprecedented 6–5–5 ring-fused crown-like tetrahydropyranofuran as the P2 ligand and an aminobenzothiazole as the P2' ligand with the (R)-hydroxyethylsulfonamide isostere. The crown-like P2 ligand for this inhibitor has been synthesized efficiently in an optically active form using a chiral Diels–Alder catalyst providing a key intermediate in high enantiomeric purity. Furthermore, two high resolution X-ray structures of inhibitor-bound HIV-1 protease revealed extensive interactions with the backbone atoms of HIV-1 protease and provided molecular insight into the binding properties of these new inhibitors.},
doi = {10.1021/acs.jmedchem.7b00172},
journal = {Journal of Medicinal Chemistry},
number = 10,
volume = 60,
place = {United States},
year = {Tue Apr 18 00:00:00 EDT 2017},
month = {Tue Apr 18 00:00:00 EDT 2017}
}
Web of Science
Works referenced in this record:
Recent Progress in the Development of HIV-1 Protease Inhibitors for the Treatment of HIV/AIDS
journal, January 2016
- Ghosh, Arun K.; Osswald, Heather L.; Prato, Gary
- Journal of Medicinal Chemistry, Vol. 59, Issue 11
The Effect of Highly Active Antiretroviral Therapy on the Survival of HIV-Infected Children in a Resource-Deprived Setting: A Cohort Study
journal, June 2011
- Edmonds, Andrew; Yotebieng, Marcel; Lusiama, Jean
- PLoS Medicine, Vol. 8, Issue 6
Association of highly active antiretroviral therapy coverage, population viral load, and yearly new HIV diagnoses in British Columbia, Canada: a population-based study
journal, August 2010
- Montaner, Julio SG; Lima, Viviane D.; Barrios, Rolando
- The Lancet, Vol. 376, Issue 9740
Improved survival in HIV-infected persons: consequences and perspectives
journal, July 2007
- Lohse, Nicolai; Hansen, Ann-Brit Eg; Gerstoft, Jan
- Journal of Antimicrobial Chemotherapy, Vol. 60, Issue 3
Demonstration of Sustained Drug-Resistant Human Immunodeficiency Virus Type 1 Lineages Circulating among Treatment-Naive Individuals
journal, January 2009
- Hue, S.; Gifford, R. J.; Dunn, D.
- Journal of Virology, Vol. 83, Issue 6
HIV-associated neurocognitive disorder — pathogenesis and prospects for treatment
journal, March 2016
- Saylor, Deanna; Dickens, Alex M.; Sacktor, Ned
- Nature Reviews Neurology, Vol. 12, Issue 4
Current status and challenges of antiretroviral research and therapy
journal, January 2010
- Esté, José A.; Cihlar, Tomas
- Antiviral Research, Vol. 85, Issue 1
Enhancing Protein Backbone Binding-A Fruitful Concept for Combating Drug-Resistant HIV
journal, January 2012
- Ghosh, Arun K.; Anderson, David D.; Weber, Irene T.
- Angewandte Chemie International Edition, Vol. 51, Issue 8
Darunavir, a New PI with Dual Mechanism: From a Novel Drug Design Concept to New Hope against Drug-Resistant HIV
book, January 2010
- Ghosh, Arun K.; Chapsal, Bruno D.; Mitsuya, Hiroaki
- Aspartic Acid Proteases as Therapeutic Targets
Design of HIV Protease Inhibitors Targeting Protein Backbone: An Effective Strategy for Combating Drug Resistance
journal, January 2008
- Ghosh, Arun K.; Chapsal, Bruno D.; Weber, Irene T.
- Accounts of Chemical Research, Vol. 41, Issue 1
Structure-Based Design of Novel HIV-1 Protease Inhibitors To Combat Drug Resistance
journal, August 2006
- Ghosh, Arun K.; Sridhar, Perali Ramu; Leshchenko, Sofiya
- Journal of Medicinal Chemistry, Vol. 49, Issue 17
Crystal Structures of the Inactive D30N Mutant of Feline Immunodeficiency Virus Protease Complexed with a Substrate and an Inhibitor † , ‡
journal, September 1997
- Laco, Gary S.; Schalk-Hihi, Céline; Lubkowski, Jacek
- Biochemistry, Vol. 36, Issue 35
HIV-1 Protease: Structural Perspectives on Drug Resistance
journal, December 2009
- Weber, Irene; Agniswamy, Johnson
- Viruses, Vol. 1, Issue 3
Bis-Tetrahydrofuran: a Privileged Ligand for Darunavir and a New Generation of HIV Protease Inhibitors That Combat Drug Resistance
journal, September 2006
- Ghosh, Arun K.; Ramu Sridhar, Perali; Kumaragurubaran, Nagaswamy
- ChemMedChem, Vol. 1, Issue 9
Potent HIV protease inhibitors incorporating high-affinity P2-ligands and (R)-(hydroxyethylamino)sulfonamide isostere
journal, March 1998
- Ghosh, Arun K.; Kincaid, John F.; Cho, Wonhwa
- Bioorganic & Medicinal Chemistry Letters, Vol. 8, Issue 6
Darunavir, a conceptually new HIV-1 protease inhibitor for the treatment of drug-resistant HIV
journal, December 2007
- Ghosh, Arun K.; Dawson, Zachary L.; Mitsuya, Hiroaki
- Bioorganic & Medicinal Chemistry, Vol. 15, Issue 24
Novel bis-Tetrahydrofuranylurethane-Containing Nonpeptidic Protease Inhibitor (PI) UIC-94017 (TMC114) with Potent Activity against Multi-PI-Resistant Human Immunodeficiency Virus In Vitro
journal, September 2003
- Koh, Y.; Nakata, H.; Maeda, K.
- Antimicrobial Agents and Chemotherapy, Vol. 47, Issue 10
High Resolution Crystal Structures of HIV-1 Protease with a Potent Non-peptide Inhibitor (UIC-94017) Active Against Multi-drug-resistant Clinical Strains
journal, April 2004
- Tie, Yunfeng; Boross, Peter I.; Wang, Yuan-Fang
- Journal of Molecular Biology, Vol. 338, Issue 2
Structural and Thermodynamic Basis for the Binding of TMC114, a Next-Generation Human Immunodeficiency Virus Type 1 Protease Inhibitor
journal, October 2004
- King, N. M.; Prabu-Jeyabalan, M.; Nalivaika, E. A.
- Journal of Virology, Vol. 78, Issue 21
A Potent Human Immunodeficiency Virus Type 1 Protease Inhibitor, UIC-94003 (TMC-126), and Selection of a Novel (A28S) Mutation in the Protease Active Site
journal, February 2002
- Yoshimura, K.; Kato, R.; Kavlick, M. F.
- Journal of Virology, Vol. 76, Issue 3
TMC114, a Novel Human Immunodeficiency Virus Type 1 Protease Inhibitor Active against Protease Inhibitor-Resistant Viruses, Including a Broad Range of Clinical Isolates
journal, May 2005
- De Meyer, S.; Azijn, H.; Surleraux, D.
- Antimicrobial Agents and Chemotherapy, Vol. 49, Issue 6
Ultra-high Resolution Crystal Structure of HIV-1 Protease Mutant Reveals Two Binding Sites for Clinical Inhibitor TMC114
journal, October 2006
- Kovalevsky, Andrey Y.; Liu, Fengling; Leshchenko, Sofiya
- Journal of Molecular Biology, Vol. 363, Issue 1
Design and Synthesis of Potent HIV-1 Protease Inhibitors Incorporating Hexahydrofuropyranol-Derived High Affinity P 2 Ligands: Structure−Activity Studies and Biological Evaluation
journal, January 2011
- Ghosh, Arun K.; Chapsal, Bruno D.; Baldridge, Abigail
- Journal of Medicinal Chemistry, Vol. 54, Issue 2
Biological Aspects of Emerging Benzothiazoles: A Short Review
journal, January 2013
- Ali, Ruhi; Siddiqui, Nadeem
- Journal of Chemistry, Vol. 2013
A Comprehensive Review on Recent advances in Synthesis & Pharmacotherapeutic potential of Benzothiazoles
journal, October 2015
- Seth, Sonakshi
- Anti-Inflammatory & Anti-Allergy Agents in Medicinal Chemistry, Vol. 14, Issue 2
[4 + 2] Cycloaddition Reactions Catalyzed by a Chiral Oxazaborolidinium Cation. Reaction Rates and Diastereo-, Regio-, and Enantioselectivity Depend on Whether Both Bonds Are Formed Simultaneously
journal, February 2010
- Mukherjee, Santanu; Corey, E. J.
- Organic Letters, Vol. 12, Issue 5
Cationic Chiral Fluorinated Oxazaborolidines. More Potent, Second-Generation Catalysts for Highly Enantioselective Cycloaddition Reactions
journal, February 2016
- Mahender Reddy, Karla; Bhimireddy, Eswar; Thirupathi, Barla
- Journal of the American Chemical Society, Vol. 138, Issue 7
Copper-catalyzed addition of diboron reagents to α,β-acetylenic esters: efficient synthesis of β-boryl-α,β-ethylenic esters
journal, January 2008
- Lee, Ji-Eon; Kwon, Jisook; Yun, Jaesook
- Chem. Commun., Issue 6
An Expedient Procedure for the Oxidative Cleavage of Olefinic Bonds with PhI(OAc) 2 , NMO, and Catalytic OsO 4
journal, February 2010
- Nicolaou, K. C.; Adsool, Vikrant A.; Hale, Christopher R. H.
- Organic Letters, Vol. 12, Issue 7
Design and Synthesis of Stereochemically Defined Novel Spirocyclic P2-Ligands for HIV-1 Protease Inhibitors
journal, October 2008
- Ghosh, Arun K.; Chapsal, Bruno D.; Baldridge, Abigail
- Organic Letters, Vol. 10, Issue 22
Design of HIV-1 Protease Inhibitors with C3-Substituted Hexahydrocyclopentafuranyl Urethanes as P2-Ligands: Synthesis, Biological Evaluation, and Protein–Ligand X-ray Crystal Structure
journal, August 2011
- Ghosh, Arun K.; Chapsal, Bruno D.; Parham, Garth L.
- Journal of Medicinal Chemistry, Vol. 54, Issue 16
The first practical method for asymmetric epoxidation
journal, August 1980
- Katsuki, Tsutomu; Sharpless, K. Barry
- Journal of the American Chemical Society, Vol. 102, Issue 18
Catalytic asymmetric epoxidation and kinetic resolution: modified procedures including in situ derivatization
journal, September 1987
- Gao, Yun; Klunder, Janice M.; Hanson, Robert M.
- Journal of the American Chemical Society, Vol. 109, Issue 19
Design and synthesis of potent macrocyclic HIV-1 protease inhibitors involving P1–P2 ligands
journal, January 2014
- Ghosh, Arun K.; Schiltz, Gary E.; Rusere, Linah N.
- Org. Biomol. Chem., Vol. 12, Issue 35
Sixty years of staudinger reaction
journal, January 1981
- Gololobov, Yu. G.; Zhmurova, I. N.; Kasukhin, L. F.
- Tetrahedron, Vol. 37, Issue 3
A simple, continuous fluorometric assay for HIV protease
journal, December 1990
- Toth, Mihaly V.; Marshall, Garland R.
- International Journal of Peptide and Protein Research, Vol. 36, Issue 6
In Vitro Selection of Highly Darunavir-Resistant and Replication-Competent HIV-1 Variants by Using a Mixture of Clinical HIV-1 Isolates Resistant to Multiple Conventional Protease Inhibitors
journal, September 2010
- Koh, Y.; Amano, M.; Towata, T.
- Journal of Virology, Vol. 84, Issue 22
GRL-02031, a Novel Nonpeptidic Protease Inhibitor (PI) Containing a Stereochemically Defined Fused Cyclopentanyltetrahydrofuran Potent against Multi-PI-Resistant Human Immunodeficiency Virus Type 1 In Vitro
journal, October 2008
- Koh, Y.; Das, D.; Leschenko, S.
- Antimicrobial Agents and Chemotherapy, Vol. 53, Issue 3
Works referencing / citing this record:
Nature Inspired Molecular Design: Stereoselective Synthesis of Bicyclic and Polycyclic Ethers for Potent HIV-1 Protease Inhibitors
journal, June 2018
- Ghosh, Arun K.; Brindisi, Margherita
- Asian Journal of Organic Chemistry, Vol. 7, Issue 8
Asymmetric Diels–Alder reaction of 3-(acyloxy)acryloyl oxazolidinones: optically active synthesis of a high-affinity ligand for potent HIV-1 protease inhibitors
journal, January 2019
- Ghosh, Arun K.; Grillo, Alessandro; Kovela, Satish
- RSC Advances, Vol. 9, Issue 71
Structural exploration of hydroxyethylamines as HIV-1 protease inhibitors: new features identified
journal, March 2018
- Amin, S. A.; Adhikari, N.; Bhargava, S.
- SAR and QSAR in Environmental Research, Vol. 29, Issue 5
Gold(I)‐Catalyzed Cycloisomerization of 3‐Alkoxyl‐1,6‐diynes: A Facile Access to Bicyclo[2.2.1]hept‐5‐en‐2‐ones
journal, March 2020
- Hu, Chao; Wang, Tao; Rudolph, Matthias
- Angewandte Chemie International Edition, Vol. 59, Issue 22
Gypsum-DL: an open-source program for preparing small-molecule libraries for structure-based virtual screening
journal, May 2019
- Ropp, Patrick J.; Spiegel, Jacob O.; Walker, Jennifer L.
- Journal of Cheminformatics, Vol. 11, Issue 1
Eine strukturelle Evaluierung medizinalchemischer Strategien gegen Wirkstoffresistenzen
journal, January 2019
- Agnello, Stefano; Brand, Michael; Chellat, Mathieu F.
- Angewandte Chemie, Vol. 131, Issue 11
Design of Highly Potent, Dual-Acting and Central-Nervous-System-Penetrating HIV-1 Protease Inhibitors with Excellent Potency against Multidrug-Resistant HIV-1 Variants
journal, March 2018
- Ghosh, Arun K.; Rao, Kalapala Venkateswara; Nyalapatla, Prasanth R.
- ChemMedChem, Vol. 13, Issue 8
Novel Protease Inhibitors Containing C-5-Modified bis -Tetrahydrofuranylurethane and Aminobenzothiazole as P2 and P2′ Ligands That Exert Potent Antiviral Activity against Highly Multidrug-Resistant HIV-1 with a High Genetic Barrier against the Emergence of Drug Resistance
journal, May 2019
- Takamatsu, Yuki; Aoki, Manabu; Bulut, Haydar
- Antimicrobial Agents and Chemotherapy, Vol. 63, Issue 8
Ligand-controlled palladium catalysis enables switch between mono- and di-arylation of primary aromatic amines with 2-halobenzothiazoles
journal, January 2020
- Zhu, Yan-Qiu; Zhang, Rui; Sang, Wei
- Organic Chemistry Frontiers
Potent HIV‐1 Protease Inhibitors Containing Carboxylic and Boronic Acids: Effect on Enzyme Inhibition and Antiviral Activity and Protein‐Ligand X‐ray Structural Studies
journal, October 2019
- Ghosh, Arun K.; Xia, Zilei; Kovela, Satish
- ChemMedChem, Vol. 14, Issue 21
A Structural View on Medicinal Chemistry Strategies against Drug Resistance
journal, January 2019
- Agnello, Stefano; Brand, Michael; Chellat, Mathieu F.
- Angewandte Chemie International Edition, Vol. 58, Issue 11
Structural exploration of hydroxyethylamines as HIV-1 protease inhibitors: new features identified
text, January 2018
- Amin, S. A.; Adhikari, N.; Bhargava, S.
- Taylor & Francis
Gypsum-DL: an open-source program for preparing small-molecule libraries for structure-based virtual screening
journal, May 2019
- Ropp, Patrick J.; Spiegel, Jacob O.; Walker, Jennifer L.
- Journal of Cheminformatics, Vol. 11, Issue 1