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Title: Vibrational spectroscopy for imaging single microbial cells in complex biological samples

Abstract

Here, vibrational spectroscopy is increasingly used for the rapid and non-destructive imaging of environmental and medical samples. Both Raman and Fourier-transform infrared (FT-IR) imaging have been applied to obtain detailed information on the chemical composition of biological materials, ranging from single microbial cells to tissues. Due to its compatibility with methods such as stable isotope labeling for the monitoring of cellular activities, vibrational spectroscopy also holds considerable power as a tool in microbial ecology. Chemical imaging of undisturbed biological systems (such as live cells in their native habitats) presents unique challenges due to the physical and chemical complexity of the samples, potential for spectral interference, and frequent need for real-time measurements. This Mini Review provides a critical synthesis of recent applications of Raman and FT-IR spectroscopy for characterizing complex biological samples, with a focus on developments in single-cell imaging. We also discuss how new spectroscopic methods could be used to overcome current limitations of singlecell analyses. Given the inherent complementarity of Raman and FT-IR spectroscopic methods, we discuss how combining these approaches could enable us to obtain new insights into biological activities either in situ or under conditions that simulate selected properties of the natural environment.

Authors:
 [1];  [1]
  1. Univ. of Vienna, Vienna (Austria)
Publication Date:
Research Org.:
Univ. of North Carolina, Chapel Hill, NC (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
1367190
Grant/Contract Number:  
SC0013887
Resource Type:
Accepted Manuscript
Journal Name:
Frontiers in Microbiology
Additional Journal Information:
Journal Volume: 8; Journal ID: ISSN 1664-302X
Publisher:
Frontiers Research Foundation
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; imaging; isotope labeling; single-cell analysis; vibrational spectroscopy

Citation Formats

Harrison, Jesse P., and Berry, David. Vibrational spectroscopy for imaging single microbial cells in complex biological samples. United States: N. p., 2017. Web. doi:10.3389/fmicb.2017.00675.
Harrison, Jesse P., & Berry, David. Vibrational spectroscopy for imaging single microbial cells in complex biological samples. United States. doi:10.3389/fmicb.2017.00675.
Harrison, Jesse P., and Berry, David. Thu . "Vibrational spectroscopy for imaging single microbial cells in complex biological samples". United States. doi:10.3389/fmicb.2017.00675. https://www.osti.gov/servlets/purl/1367190.
@article{osti_1367190,
title = {Vibrational spectroscopy for imaging single microbial cells in complex biological samples},
author = {Harrison, Jesse P. and Berry, David},
abstractNote = {Here, vibrational spectroscopy is increasingly used for the rapid and non-destructive imaging of environmental and medical samples. Both Raman and Fourier-transform infrared (FT-IR) imaging have been applied to obtain detailed information on the chemical composition of biological materials, ranging from single microbial cells to tissues. Due to its compatibility with methods such as stable isotope labeling for the monitoring of cellular activities, vibrational spectroscopy also holds considerable power as a tool in microbial ecology. Chemical imaging of undisturbed biological systems (such as live cells in their native habitats) presents unique challenges due to the physical and chemical complexity of the samples, potential for spectral interference, and frequent need for real-time measurements. This Mini Review provides a critical synthesis of recent applications of Raman and FT-IR spectroscopy for characterizing complex biological samples, with a focus on developments in single-cell imaging. We also discuss how new spectroscopic methods could be used to overcome current limitations of singlecell analyses. Given the inherent complementarity of Raman and FT-IR spectroscopic methods, we discuss how combining these approaches could enable us to obtain new insights into biological activities either in situ or under conditions that simulate selected properties of the natural environment.},
doi = {10.3389/fmicb.2017.00675},
journal = {Frontiers in Microbiology},
number = ,
volume = 8,
place = {United States},
year = {2017},
month = {4}
}

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