Plant and soil effects on bacterial communities associated with Miscanthus  ×  giganteus rhizosphere and rhizomes

Li, Dongfang; Voigt, Thomas B.; Kent, Angela D.

doi:10.1111/gcbb.12252

Title: Plant and soil effects on bacterial communities associated with Miscanthus × giganteus rhizosphere and rhizomes

Journal Article · Thu Apr 30 04:00:00 UTC 2015 · Global Change Biology. Bioenergy

DOI: https://doi.org/10.1111/gcbb.12252 · OSTI ID:1361197

^[1]; Voigt, Thomas B. ^[2]; Kent, Angela D. ^[3]

Univ. of Illinois at Urbana-Champaign, IL (United States). Dept. of Natural Resources and Environmental Sciences; Department of Natural Resources and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, 61801
Univ. of Illinois at Urbana-Champaign, IL (United States). Dept. of Crop Sciences
Univ. of Illinois at Urbana-Champaign, IL (United States). Dept. of Natural Resources and Environmental Sciences

Here, bacterial assemblages, especially diazotroph assemblages residing in the rhizomes and the rhizosphere soil of Miscanthus × giganteus, contribute to plant growth and nitrogen use efficiency. However, the composition of these microbial communities has not been adequately explored nor have the potential ecological drivers for these communities been sufficiently studied. This knowledge is needed for understanding and potentially improving M. × giganteus – microbe interactions, and further enhancing sustainability of M. × giganteus production. In this study, cultivated M. × giganteus from four sites in Illinois, Kentucky, Nebraska, and New Jersey were collected to examine the relative influences of soil conditions and plant compartments on assembly of the M. × giganteus-associated microbiome. Automated ribosomal intergenic spacer (ARISA) and terminal restriction fragment length polymorphism (T-RFLP) targeting the nifH gene were applied to examine the total bacterial communities and diazotroph assemblages that reside in the rhizomes and the rhizosphere. Distinct microbial assemblages were detected in the endophytic and rhizosphere compartments. Site soil conditions had strong correlation with both total bacterial and diazotroph assemblages, but in different ways. Nitrogen treatments showed no significant effect on the composition of diazotroph assemblages in most sites. Endophytic compartments of different M. × giganteus plants tended to harbor similar microbial communities across all sites, whereas the rhizosphere soil of different plant tended to harbor diverse microbial assemblages that were distinct among sites. These observations offer insight into better understanding of the associative interactions between M. × giganteus and diazotrophs, and how this relationship is influenced by agronomic and edaphic factors.

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Research Organization:: South Dakota State Univ., Brookings, SD (United States)

Sponsoring Organization:: USDOE Office of Energy Efficiency and Renewable Energy (EERE), Bioenergy Technologies Office (EE-3B); Univ. of Illinois at Urbana-Champaign, IL (United States). Energy Farm; U.S. Department of Agriculture (USDA). Cooperative State Research, Education, and Extension Service (CSREES)

Grant/Contract Number:: FC36-05GO85041

OSTI ID:: 1361197

Journal Information:: Global Change Biology. Bioenergy, Journal Name: Global Change Biology. Bioenergy Journal Issue: 1 Vol. 8; ISSN 1757-1693

Publisher:: WileyCopyright Statement

Country of Publication:: United States

Language:: English

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59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES
Miscanthus x giganteus
bacterial community composition
bioenergy feedstock
diazotroph
endophytic compartment
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Title: Plant and soil effects on bacterial communities associated with Miscanthus × giganteus rhizosphere and rhizomes

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