Diversity and specificity: auxin perception and signaling through the TIR1/AFB pathway

Wang, Renhou; Estelle, Mark

doi:10.1016/j.pbi.2014.06.006

Title: Diversity and specificity: auxin perception and signaling through the TIR1/AFB pathway

Journal Article · Tue Jul 15 00:00:00 EDT 2014 · Current Opinion in Plant Biology

DOI: https://doi.org/10.1016/j.pbi.2014.06.006 · OSTI ID:1356172

Wang, Renhou ^[1]; Estelle, Mark ^[2]

Univ. of California, San Diego, CA (United States). Section of Cell and Developmental Biology. Howard Hughes Medical Inst.; Department of Energy, Office of Scientific and Technical information (OSTI)
Univ. of California, San Diego, CA (United States). Section of Cell and Developmental Biology. Howard Hughes Medical Inst.

Auxin is a versatile plant hormone that plays an essential role in most aspects of plant growth and development. Auxin regulates various growth processes by modulating gene transcription through a SCF^TIR1/AFB-Aux/IAA-ARF nuclear signaling module. Recent work has generated clues as to how multiple layers of regulation of the auxin signaling components may result in diverse and specific response outputs. Finally, in particular, interaction and structural studies of key auxin signaling proteins have produced novel insights into the molecular basis of auxin-regulated transcription and may lead to a refined auxin signaling model.

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Research Organization:: Univ. of California, San Diego, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22); National Inst. of Health (NIH) (United States); Gordon and Betty Moore Foundation (United States); Howard Hughes Medical Inst. (United States)

Grant/Contract Number:: FG02-09ER16007

OSTI ID:: 1356172

Journal Information:: Current Opinion in Plant Biology, Journal Name: Current Opinion in Plant Biology Vol. 21; ISSN 1369-5266

Publisher:: ElsevierCopyright Statement

Country of Publication:: United States

Language:: English

References (60)

Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors Boer, D. Roeland; Freire-Rios, Alejandra; van den Berg, Willy A. M. Cell, Vol. 156, Issue 3 https://doi.org/10.1016/j.cell.2013.12.027	journal	January 2014
RETRACTED: The AFB4 Auxin Receptor Is a Negative Regulator of Auxin Signaling in Seedlings Greenham, Katie; Santner, Aaron; Castillejo, Cristina Current Biology, Vol. 21, Issue 6 https://doi.org/10.1016/j.cub.2011.02.029	journal	March 2011
Plant Development Is Regulated by a Family of Auxin Receptor F Box Proteins Dharmasiri, Nihal; Dharmasiri, Sunethra; Weijers, Dolf Developmental Cell, Vol. 9, Issue 1 https://doi.org/10.1016/j.devcel.2005.05.014	journal	July 2005
Different Auxin Response Machineries Control Distinct Cell Fates in the Early Plant Embryo Rademacher, Eike H.; Lokerse, Annemarie S.; Schlereth, Alexandra Developmental Cell, Vol. 22, Issue 1 https://doi.org/10.1016/j.devcel.2011.10.026	journal	January 2012
Auxin response factors Guilfoyle, Tom J.; Hagen, Gretchen Current Opinion in Plant Biology, Vol. 10, Issue 5 https://doi.org/10.1016/j.pbi.2007.08.014	journal	October 2007
Auxin enters the matrix—assembly of response machineries for specific outputs Lokerse, Annemarie S.; Weijers, Dolf Current Opinion in Plant Biology, Vol. 12, Issue 5 https://doi.org/10.1016/j.pbi.2009.07.007	journal	October 2009
Defining auxin response contexts in plant development Kieffer, Martin; Neve, Joshua; Kepinski, Stefan Current Opinion in Plant Biology, Vol. 13, Issue 1 https://doi.org/10.1016/j.pbi.2009.10.006	journal	February 2010
From perception to attenuation: auxin signalling and responses Peer, Wendy Ann Current Opinion in Plant Biology, Vol. 16, Issue 5 https://doi.org/10.1016/j.pbi.2013.08.003	journal	October 2013
Getting a grasp on domain III/IV responsible for Auxin Response Factor–IAA protein interactions Guilfoyle, Tom J.; Hagen, Gretchen Plant Science, Vol. 190 https://doi.org/10.1016/j.plantsci.2012.04.003	journal	July 2012
Defining Binding Efficiency and Specificity of Auxins for SCF ^TIR1/AFB -Aux/IAA Co-receptor Complex Formation Lee, Sarah; Sundaram, Shanthy; Armitage, Lynne ACS Chemical Biology, Vol. 9, Issue 3 https://doi.org/10.1021/cb400618m	journal	December 2013
The auxin signalling network translates dynamic input into robust patterning at the shoot apex Vernoux, Teva; Brunoud, Géraldine; Farcot, Etienne Molecular Systems Biology, Vol. 7, Issue 1 https://doi.org/10.1038/msb.2011.39	journal	January 2011
The Arabidopsis F-box protein TIR1 is an auxin receptor Kepinski, Stefan; Leyser, Ottoline Nature, Vol. 435, Issue 7041 https://doi.org/10.1038/nature03542	journal	May 2005
The F-box protein TIR1 is an auxin receptor Dharmasiri, Nihal; Dharmasiri, Sunethra; Estelle, Mark Nature, Vol. 435, Issue 7041 https://doi.org/10.1038/nature03543	journal	May 2005
Mechanism of auxin perception by the TIR1 ubiquitin ligase Tan, Xu; Calderon-Villalobos, Luz Irina A.; Sharon, Michal Nature, Vol. 446, Issue 7136 https://doi.org/10.1038/nature05731	journal	April 2007
A novel sensor to map auxin response and distribution at high spatio-temporal resolution Brunoud, Géraldine; Wells, Darren M.; Oliva, Marina Nature, Vol. 482, Issue 7383 https://doi.org/10.1038/nature10791	journal	January 2012
A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development Cho, Hyunwoo; Ryu, Hojin; Rho, Sangchul Nature Cell Biology, Vol. 16, Issue 1 https://doi.org/10.1038/ncb2893	journal	December 2013
A combinatorial TIR1/AFB–Aux/IAA co-receptor system for differential sensing of auxin Calderón Villalobos, Luz Irina A.; Lee, Sarah; De Oliveira, Cesar Nature Chemical Biology, Vol. 8, Issue 5 https://doi.org/10.1038/nchembio.926	journal	April 2012
Structural basis for oligomerization of auxin transcriptional regulators Nanao, Max H.; Vinos-Poyo, Thomas; Brunoud, Géraldine Nature Communications, Vol. 5, Issue 1 https://doi.org/10.1038/ncomms4617	journal	April 2014
The many roles of histone deacetylases in development and physiology: implications for disease and therapy Haberland, Michael; Montgomery, Rusty L.; Olson, Eric N. Nature Reviews Genetics, Vol. 10, Issue 1 https://doi.org/10.1038/nrg2485	journal	January 2009
Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators Weijers, Dolf; Benkova, Eva; Jäger, Katja E. The EMBO Journal, Vol. 24, Issue 10 https://doi.org/10.1038/sj.emboj.7600659	journal	May 2005
Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2 Vert, G.; Walcher, C. L.; Chory, J. Proceedings of the National Academy of Sciences, Vol. 105, Issue 28 https://doi.org/10.1073/pnas.0803996105	journal	July 2008
Complex regulation of the TIR1/AFB family of auxin receptors Parry, G.; Calderon-Villalobos, L. I.; Prigge, M. Proceedings of the National Academy of Sciences, Vol. 106, Issue 52 https://doi.org/10.1073/pnas.0911967106	journal	December 2009
Putative Arabidopsis Transcriptional Adaptor Protein (PROPORZ1) is required to modulate histone acetylation in response to auxin Anzola, J. M.; Sieberer, T.; Ortbauer, M. Proceedings of the National Academy of Sciences, Vol. 107, Issue 22 https://doi.org/10.1073/pnas.0913918107	journal	May 2010
Spatio-temporal sequence of cross-regulatory events in root meristem growth Scacchi, E.; Salinas, P.; Gujas, B. Proceedings of the National Academy of Sciences, Vol. 107, Issue 52 https://doi.org/10.1073/pnas.1014716108	journal	December 2010
Repression by an auxin/indole acetic acid protein connects auxin signaling with heat shock factor-mediated seed longevity Carranco, R.; Espinosa, J. M.; Prieto-Dapena, P. Proceedings of the National Academy of Sciences, Vol. 107, Issue 50 https://doi.org/10.1073/pnas.1014856107	journal	November 2010
Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription Wang, L.; Kim, J.; Somers, D. E. Proceedings of the National Academy of Sciences, Vol. 110, Issue 2 https://doi.org/10.1073/pnas.1215010110	journal	December 2012
Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression Korasick, D. A.; Westfall, C. S.; Lee, S. G. Proceedings of the National Academy of Sciences, Vol. 111, Issue 14 https://doi.org/10.1073/pnas.1400074111	journal	March 2014
Protein-protein interactions among the Aux/IAA proteins Kim, J.; Harter, K.; Theologis, A. Proceedings of the National Academy of Sciences, Vol. 94, Issue 22 https://doi.org/10.1073/pnas.94.22.11786	journal	October 1997
Auxin conjugates: their role for plant development and in the evolution of land plants Ludwig-Müller, Jutta Journal of Experimental Botany, Vol. 62, Issue 6 https://doi.org/10.1093/jxb/erq412	journal	February 2011
Tuning the auxin transcriptional response Pierre-Jerome, Edith; Moss, Britney L.; Nemhauser, Jennifer L. Journal of Experimental Botany, Vol. 64, Issue 9 https://doi.org/10.1093/jxb/ert100	journal	April 2013
Auxin and the ubiquitin pathway. Two players–one target: the cell cycle in action del Pozo, Juan C.; Manzano, Concepción Journal of Experimental Botany, Vol. 65, Issue 10 https://doi.org/10.1093/jxb/ert363	journal	November 2013
Fluorescence Cross-Correlation Analyses of the Molecular Interaction between an Aux/IAA Protein, MSG2/IAA19, and Protein–Protein Interaction Domains of Auxin Response Factors of Arabidopsis Expressed in HeLa Cells Muto, Hideki; Nagao, Issei; Demura, Taku Plant and Cell Physiology, Vol. 47, Issue 8 https://doi.org/10.1093/pcp/pcj080	journal	August 2006
The Interaction and Integration of Auxin Signaling Components Hayashi, K. -i. Plant and Cell Physiology, Vol. 53, Issue 6 https://doi.org/10.1093/pcp/pcs035	journal	March 2012
Small RNA-Regulated Networks and the Evolution of Novel Structures in Plants Plavskin, Y.; Timmermans, M. C. P. Cold Spring Harbor Symposia on Quantitative Biology, Vol. 77, Issue 0 https://doi.org/10.1101/sqb.2013.77.014878	journal	January 2012
Specificity and Similarity of Functions of the Aux/IAA Genes in Auxin Signaling of Arabidopsis Revealed by Promoter-Exchange Experiments among MSG2/IAA19, AXR2/IAA7 , and SLR/IAA14 Muto, Hideki; Watahiki, Masaaki K.; Nakamoto, Daisuke Plant Physiology, Vol. 144, Issue 1 https://doi.org/10.1104/pp.107.096628	journal	March 2007
The TOPLESS Interactome: A Framework for Gene Repression in Arabidopsis Causier, Barry; Ashworth, Mary; Guo, Wenjia Plant Physiology, Vol. 158, Issue 1 https://doi.org/10.1104/pp.111.186999	journal	November 2011
Bipartite Promoter Element Required for Auxin Response Walcher, Cristina L.; Nemhauser, Jennifer L. Plant Physiology, Vol. 158, Issue 1 https://doi.org/10.1104/pp.111.187559	journal	November 2011
A Synthetic Approach Reveals Extensive Tunability of Auxin Signaling Havens, Kyle A.; Guseman, Jessica M.; Jang, Seunghee S. Plant Physiology, Vol. 160, Issue 1 https://doi.org/10.1104/pp.112.202184	journal	July 2012
Mutations in the TIR1 Auxin Receptor That Increase Affinity for Auxin/Indole-3-Acetic Acid Proteins Result in Auxin Hypersensitivity Yu, Hong; Moss, Britney L.; Jang, Seunghee S. Plant Physiology, Vol. 162, Issue 1 https://doi.org/10.1104/pp.113.215582	journal	March 2013
The Roles of Auxin Response Factor Domains in Auxin-Responsive Transcription Tiwari, Shiv B.; Hagen, Gretchen; Guilfoyle, Tom The Plant Cell, Vol. 15, Issue 2 https://doi.org/10.1105/tpc.008417	journal	January 2003
Rapid Degradation of Auxin/Indoleacetic Acid Proteins Requires Conserved Amino Acids of Domain II and Is Proteasome Dependent Ramos, Jason A.; Zenser, Nathan; Leyser, Ottoline The Plant Cell, Vol. 13, Issue 10 https://doi.org/10.1105/tpc.010244	journal	October 2001
AUX/IAA Proteins Are Active Repressors, and Their Stability and Activity Are Modulated by Auxin Tiwari, Shiv B.; Wang, Xiao-Jun; Hagen, Gretchen The Plant Cell, Vol. 13, Issue 12 https://doi.org/10.1105/tpc.010289	journal	December 2001
The Arabidopsis Aux/IAA Protein Family Has Diversified in Degradation and Auxin Responsiveness Dreher, Kate A.; Brown, Jessica; Saw, Robert E. The Plant Cell, Vol. 18, Issue 3 https://doi.org/10.1105/tpc.105.039172	journal	February 2006
The Arabidopsis Transcription Factor MYB77 Modulates Auxin Signal Transduction Shin, Ryoung; Burch, Adrien Y.; Huppert, Kari A. The Plant Cell, Vol. 19, Issue 8 https://doi.org/10.1105/tpc.107.050963	journal	August 2007
AUXIN RESPONSE FACTOR8 Regulates Arabidopsis Petal Growth by Interacting with the bHLH Transcription Factor BIGPETALp Varaud, Emilie; Brioudes, Florian; Szécsi, Judit The Plant Cell, Vol. 23, Issue 3 https://doi.org/10.1105/tpc.110.081653	journal	March 2011
AUXIN BINDING PROTEIN1: The Outsider Sauer, Michael; Kleine-Vehn, Jürgen The Plant Cell, Vol. 23, Issue 6 https://doi.org/10.1105/tpc.111.087064	journal	June 2011
IAA17/AXR3: Biochemical Insight into an Auxin Mutant Phenotype Ouellet, François; Overvoorde, Paul J.; Theologis, Athanasios The Plant Cell, Vol. 13, Issue 4 https://doi.org/10.1105/tpc.13.4.829	journal	April 2001
A cellular expression map of the Arabidopsis AUXIN RESPONSE FACTOR gene family: A cellular expression map of ARF gene expression Rademacher, Eike H.; Möller, Barbara; Lokerse, Annemarie S. The Plant Journal, Vol. 68, Issue 4 https://doi.org/10.1111/j.1365-313X.2011.04710.x	journal	August 2011
Nitric oxide influences auxin signaling through S-nitrosylation of the Arabidopsis TRANSPORT INHIBITOR RESPONSE 1 auxin receptor: S-nitrosylation of the TIR1 auxin receptor Terrile, María C.; París, Ramiro; Calderón-Villalobos, Luz I. A. The Plant Journal, Vol. 70, Issue 3 https://doi.org/10.1111/j.1365-313X.2011.04885.x	journal	January 2012
TOPLESS Regulates Apical Embryonic Fate in Arabidopsis Long, J. A. Science, Vol. 312, Issue 5779 https://doi.org/10.1126/science.1123841	journal	June 2006
TOPLESS Mediates Auxin-Dependent Transcriptional Repression During Arabidopsis Embryogenesis Szemenyei, H.; Hannon, M.; Long, J. A. Science, Vol. 319, Issue 5868 https://doi.org/10.1126/science.1151461	journal	March 2008
Cell Surface ABP1-TMK Auxin-Sensing Complex Activates ROP GTPase Signaling Xu, T.; Dai, N.; Chen, J. Science, Vol. 343, Issue 6174 https://doi.org/10.1126/science.1245125	journal	February 2014
ARF1, a Transcription Factor That Binds to Auxin Response Elements Ulmasov, T. Science, Vol. 276, Issue 5320 https://doi.org/10.1126/science.276.5320.1865	journal	June 1997
Auxin Biosynthesis and Its Role in Plant Development Zhao, Yunde Annual Review of Plant Biology, Vol. 61, Issue 1 https://doi.org/10.1146/annurev-arplant-042809-112308	journal	June 2010
Mechanism of Auxin-Regulated Gene Expression in Plants Chapman, Elisabeth J.; Estelle, Mark Annual Review of Genetics, Vol. 43, Issue 1 https://doi.org/10.1146/annurev-genet-102108-134148	journal	December 2009
AXR3 and SHY2 interact to regulate root hair development Knox, Kirsten; Grierson, Claire S.; Leyser, Ottoline Development, Vol. 130, Issue 23 https://doi.org/10.1242/dev.00659	journal	December 2003
Overlapping and non-redundant functions of the Arabidopsis auxin response factors MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4 Hardtke, C. S. Development, Vol. 131, Issue 5 https://doi.org/10.1242/dev.00925	journal	March 2004
Auxin transport routes in plant development Petrasek, J.; Friml, J. Development, Vol. 136, Issue 16 https://doi.org/10.1242/dev.030353	journal	July 2009
APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19 Krogan, N. T.; Hogan, K.; Long, J. A. Development, Vol. 139, Issue 22 https://doi.org/10.1242/dev.085407	journal	October 2012
Large-Scale Protein-Protein Interaction Analysis in Arabidopsis Mesophyll Protoplasts by Split Firefly Luciferase Complementation Li, Jian-Feng; Bush, Jenifer; Xiong, Yan PLoS ONE, Vol. 6, Issue 11 https://doi.org/10.1371/journal.pone.0027364	journal	November 2011

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Involvement of Auxin and Brassinosteroid in Dwarfism of Autotetraploid Apple (Malus × domestica) Ma, Yue; Xue, Hao; Zhang, Lei Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep26719	journal	May 2016
Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas Sun, Yanwei; Wang, Chunming; Wang, Ning Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/srep40844	journal	January 2017
The miRNAome of Catharanthus roseus: identification, expression analysis, and potential roles of microRNAs in regulation of terpenoid indole alkaloid biosynthesis Shen, Ethan M.; Singh, Sanjay K.; Ghosh, Jayadri S. Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/srep43027	journal	February 2017
Solution structure of the PsIAA4 oligomerization domain reveals interaction modes for transcription factors in early auxin response Dinesh, Dhurvas Chandrasekaran; Kovermann, Michael; Gopalswamy, Mohanraj Proceedings of the National Academy of Sciences, Vol. 112, Issue 19 https://doi.org/10.1073/pnas.1424077112	journal	April 2015
Tryptophan-independent auxin biosynthesis contributes to early embryogenesis in Arabidopsis Wang, Bing; Chu, Jinfang; Yu, Tianying Proceedings of the National Academy of Sciences, Vol. 112, Issue 15 https://doi.org/10.1073/pnas.1503998112	journal	March 2015
Selective auxin agonists induce specific AUX/IAA protein degradation to modulate plant development Vain, Thomas; Raggi, Sara; Ferro, Noel Proceedings of the National Academy of Sciences, Vol. 116, Issue 13 https://doi.org/10.1073/pnas.1809037116	journal	March 2019
Plant hormone cross-talk: the pivot of root growth Pacifici, Elena; Polverari, Laura; Sabatini, Sabrina Journal of Experimental Botany, Vol. 66, Issue 4 https://doi.org/10.1093/jxb/eru534	journal	January 2015
Auxin-mediated developmental control in the moss Physcomitrella patens Thelander, Mattias; Landberg, Katarina; Sundberg, Eva Journal of Experimental Botany, Vol. 69, Issue 2 https://doi.org/10.1093/jxb/erx255	journal	August 2017
An atypical aspartic protease modulates lateral root development in Arabidopsis thaliana Soares, André; Niedermaier, Stefan; Faro, Rosário Journal of Experimental Botany, Vol. 70, Issue 7 https://doi.org/10.1093/jxb/erz059	journal	February 2019
E3 Ubiquitin Ligases: Ubiquitous Actors in Plant Development and Abiotic Stress Responses Shu, Kai; Yang, Wenyu Plant and Cell Physiology, Vol. 58, Issue 9 https://doi.org/10.1093/pcp/pcx071	journal	May 2017
Molecular machinery of auxin synthesis, secretion, and perception in the unicellular chlorophyte alga Chlorella sorokiniana UTEX 1230 Khasin, Maya; Cahoon, Rebecca R.; Nickerson, Kenneth W. PLOS ONE https://doi.org/10.1101/172833	journal	August 2017
Transcriptome-wide analysis of auxin-induced carotenoid accumulation in Chlorella microalgae Alsenani, Faisal; Wass, Taylor J.; Ma, Ruijuan BioRxiv https://doi.org/10.1101/334102	posted_content	January 2018
Selective auxin agonists induce specific AUX/IAA protein degradation to modulate plant development Vain, Thomas; Raggi, Sara; Ferro, Noel BioRxiv https://doi.org/10.1101/381608	posted_content	January 2018
Molecular framework for TIR1/AFB-Aux/IAA-dependent auxin sensing controlling adventitious rooting in Arabidopsis Lakehal, Abdellah; Chaabouni, Salma; Cavel, Emilie Molecular Plant https://doi.org/10.1101/518357	journal	January 2019
A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening Cramer, Grant R.; Cochetel, Noé; Ghan, Ryan BMC Plant Biology https://doi.org/10.1101/729236	journal	January 2019
A fuzzy encounter complex precedes formation of the fully-engaged TIR1-Aux/IAA auxin co-receptor system Ramans Harborough, Sigurd; Kalverda, Arnout P.; Thompson, Gary S. BioRxiv https://doi.org/10.1101/781922	posted_content	January 2019
ROP GTPase-mediated auxin signaling regulates pavement cell interdigitation in Arabidopsis thaliana: ROP Signaling Regulates Pavement Cell Interdigitation Lin, Deshu; Ren, Huibo; Fu, Ying Journal of Integrative Plant Biology, Vol. 57, Issue 1 https://doi.org/10.1111/jipb.12281	journal	October 2014
A leaf shape mutant provides insight into PINOID Serine/Threonine Kinase function in cucumber ( Cucumis sativus L.) Song, Mengfei; Cheng, Feng; Wang, Jing Journal of Integrative Plant Biology, Vol. 61, Issue 9 https://doi.org/10.1111/jipb.12739	journal	September 2019
Minimal auxin sensing levels in vegetative moss stem cells revealed by a ratiometric reporter Thelander, Mattias; Landberg, Katarina; Sundberg, Eva New Phytologist, Vol. 224, Issue 2 https://doi.org/10.1111/nph.16068	journal	June 2019
A Vitis vinifera basic helix-loop-helix transcription factor enhances plant cell size, vegetative biomass and reproductive yield Lim, Sung Don; Yim, Won Choel; Liu, Degao Plant Biotechnology Journal, Vol. 16, Issue 9 https://doi.org/10.1111/pbi.12898	journal	April 2018
Auxin response factors: Auxin response factors Chandler, John William Plant, Cell & Environment, Vol. 39, Issue 5 https://doi.org/10.1111/pce.12662	journal	January 2016
LBD18 uses a dual mode of a positive feedback loop to regulate ARF expression and transcriptional activity in Arabidopsis Pandey, Shashank K.; Lee, Han Woo; Kim, Min-Jung The Plant Journal, Vol. 95, Issue 2 https://doi.org/10.1111/tpj.13945	journal	June 2018
Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis Qiao, Lulu; Zheng, Liyu; Sheng, Cong The Plant Journal, Vol. 102, Issue 5 https://doi.org/10.1111/tpj.14677	journal	February 2020
Banana sRNAome and degradome identify microRNAs functioning in differential responses to temperature stress Zhu, Hong; Zhang, Yu; Tang, Ruifang BMC Genomics, Vol. 20, Issue 1 https://doi.org/10.1186/s12864-018-5395-1	journal	January 2019
Small RNA-seq reveals novel regulatory components for apomixis in Paspalum notatum Ortiz, Juan Pablo A.; Leblanc, Olivier; Rohr, Cristian BMC Genomics, Vol. 20, Issue 1 https://doi.org/10.1186/s12864-019-5881-0	journal	June 2019
Reduced expression of AtNUP62 nucleoporin gene affects auxin response in Arabidopsis Boeglin, Martin; Fuglsang, Anja Thoe; Luu, Doan-Trung BMC Plant Biology, Vol. 16, Issue 1 https://doi.org/10.1186/s12870-015-0695-y	journal	January 2016
Indole-3-butyric acid promotes adventitious rooting in Arabidopsis thaliana thin cell layers by conversion into indole-3-acetic acid and stimulation of anthranilate synthase activity Fattorini, L.; Veloccia, A.; Della Rovere, F. BMC Plant Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s12870-017-1071-x	journal	July 2017
New insights into the roles of cucumber TIR1 homologs and miR393 in regulating fruit/seed set development and leaf morphogenesis Xu, Jian; Li, Ji; Cui, Li BMC Plant Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s12870-017-1075-6	journal	July 2017
A sense of place: transcriptomics identifies environmental signatures in Cabernet Sauvignon berry skins in the late stages of ripening Cramer, Grant R.; Cochetel, Noé; Ghan, Ryan BMC Plant Biology, Vol. 20, Issue 1 https://doi.org/10.1186/s12870-020-2251-7	journal	January 2020
Mechanisms of auxin signaling Lavy, Meirav; Estelle, Mark Development, Vol. 143, Issue 18 https://doi.org/10.1242/dev.131870	journal	September 2016
Phospholipid composition and a polybasic motif determine D6 PROTEIN KINASE polar association with the plasma membrane and tropic responses Barbosa, Inês C. R.; Shikata, Hiromasa; Zourelidou, Melina Development, Vol. 143, Issue 24 https://doi.org/10.1242/dev.137117	journal	November 2016
The dynamic nature and regulation of the root clock Xuan, Wei; De Gernier, Hugues; Beeckman, Tom Development, Vol. 147, Issue 3 https://doi.org/10.1242/dev.181446	journal	February 2020
Spatial regularity control of phyllotaxis pattern generated by the mutual interaction between auxin and PIN1 Fujita, Hironori; Kawaguchi, Masayoshi PLOS Computational Biology, Vol. 14, Issue 4 https://doi.org/10.1371/journal.pcbi.1006065	journal	April 2018
Molecular machinery of auxin synthesis, secretion, and perception in the unicellular chlorophyte alga Chlorella sorokiniana UTEX 1230 Khasin, Maya; Cahoon, Rebecca R.; Nickerson, Kenneth W. PLOS ONE, Vol. 13, Issue 12 https://doi.org/10.1371/journal.pone.0205227	journal	December 2018
2,4-D Past, Present, and Future: A Review Peterson, Mark A.; McMaster, Steve A.; Riechers, Dean E. Weed Technology, Vol. 30, Issue 2 https://doi.org/10.1614/wt-d-15-00131.1	journal	June 2016
Mitochonic Acid 5 Binds Mitochondria and Ameliorates Renal Tubular and Cardiac Myocyte Damage Suzuki, Takehiro; Yamaguchi, Hiroaki; Kikusato, Motoi Journal of the American Society of Nephrology, Vol. 27, Issue 7 https://doi.org/10.1681/asn.2015060623	journal	November 2015
A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening. Cramer, Grant R.; Cochetel, Noe; Ghan, Ryan BMC Plant Biology https://doi.org/10.21203/rs.2.10248/v1	journal	January 2020
A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening. Cramer, Grant R.; Cochetel, Noe; Ghan, Ryan BMC Plant Biology https://doi.org/10.21203/rs.2.10248/v2	journal	January 2020
A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening. Cramer, Grant R.; Cochetel, Noe; Ghan, Ryan BMC Plant Biology https://doi.org/10.21203/rs.2.10248/v4	journal	January 2020
A Review of Auxin Response Factors (ARFs) in Plants Li, Si-Bei; Xie, Zong-Zhou; Hu, Chun-Gen Frontiers in Plant Science, Vol. 7 https://doi.org/10.3389/fpls.2016.00047	journal	February 2016
Target of Rapamycin Is a Key Player for Auxin Signaling Transduction in Arabidopsis Deng, Kexuan; Yu, Lihua; Zheng, Xianzhe Frontiers in Plant Science, Vol. 7 https://doi.org/10.3389/fpls.2016.00291	journal	March 2016
Developmental Roles of AUX1/LAX Auxin Influx Carriers in Plants Swarup, Ranjan; Bhosale, Rahul Frontiers in Plant Science, Vol. 10 https://doi.org/10.3389/fpls.2019.01306	journal	October 2019
Genome-Wide Analysis of Auxin Receptor Family Genes in Brassica juncea var. tumida Cai, Zhaoming; Zeng, De-er; Liao, Jingjing Genes, Vol. 10, Issue 2 https://doi.org/10.3390/genes10020165	journal	February 2019
Aux/IAA Gene Family in Plants: Molecular Structure, Regulation, and Function Luo, Jie; Zhou, Jing-Jing; Zhang, Jin-Zhi International Journal of Molecular Sciences, Vol. 19, Issue 1 https://doi.org/10.3390/ijms19010259	journal	January 2018

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