Diversity and specificity: auxin perception and signaling through the TIR1/AFB pathway

Wang, Renhou; Estelle, Mark

doi:10.1016/j.pbi.2014.06.006

Title: Diversity and specificity: auxin perception and signaling through the TIR1/AFB pathway

Journal Article · Tue Jul 15 00:00:00 UTC 2014 · Current Opinion in Plant Biology

DOI: https://doi.org/10.1016/j.pbi.2014.06.006 · OSTI ID:1356172

Wang, Renhou ^[1]; Estelle, Mark ^[2]

Univ. of California, San Diego, CA (United States). Section of Cell and Developmental Biology. Howard Hughes Medical Inst.; Department of Energy, Office of Scientific and Technical information (OSTI)
Univ. of California, San Diego, CA (United States). Section of Cell and Developmental Biology. Howard Hughes Medical Inst.

Auxin is a versatile plant hormone that plays an essential role in most aspects of plant growth and development. Auxin regulates various growth processes by modulating gene transcription through a SCF^TIR1/AFB-Aux/IAA-ARF nuclear signaling module. Recent work has generated clues as to how multiple layers of regulation of the auxin signaling components may result in diverse and specific response outputs. Finally, in particular, interaction and structural studies of key auxin signaling proteins have produced novel insights into the molecular basis of auxin-regulated transcription and may lead to a refined auxin signaling model.

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Research Organization:: Univ. of California, San Diego, CA (United States)

Sponsoring Organization:: Gordon and Betty Moore Foundation (United States); Howard Hughes Medical Inst. (United States); National Inst. of Health (NIH) (United States); USDOE; USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22)

Grant/Contract Number:: FG02-09ER16007

OSTI ID:: 1356172

Journal Information:: Current Opinion in Plant Biology, Journal Name: Current Opinion in Plant Biology Vol. 21; ISSN 1369-5266

Publisher:: ElsevierCopyright Statement

Country of Publication:: United States

Language:: English

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Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas Sun, Yanwei; Wang, Chunming; Wang, Ning Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/srep40844	journal	January 2017
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Solution structure of the PsIAA4 oligomerization domain reveals interaction modes for transcription factors in early auxin response Dinesh, Dhurvas Chandrasekaran; Kovermann, Michael; Gopalswamy, Mohanraj Proceedings of the National Academy of Sciences, Vol. 112, Issue 19 https://doi.org/10.1073/pnas.1424077112	journal	April 2015
Tryptophan-independent auxin biosynthesis contributes to early embryogenesis in Arabidopsis Wang, Bing; Chu, Jinfang; Yu, Tianying Proceedings of the National Academy of Sciences, Vol. 112, Issue 15 https://doi.org/10.1073/pnas.1503998112	journal	March 2015
Selective auxin agonists induce specific AUX/IAA protein degradation to modulate plant development Vain, Thomas; Raggi, Sara; Ferro, Noel Proceedings of the National Academy of Sciences, Vol. 116, Issue 13 https://doi.org/10.1073/pnas.1809037116	journal	March 2019
Plant hormone cross-talk: the pivot of root growth Pacifici, Elena; Polverari, Laura; Sabatini, Sabrina Journal of Experimental Botany, Vol. 66, Issue 4 https://doi.org/10.1093/jxb/eru534	journal	January 2015
Auxin-mediated developmental control in the moss Physcomitrella patens Thelander, Mattias; Landberg, Katarina; Sundberg, Eva Journal of Experimental Botany, Vol. 69, Issue 2 https://doi.org/10.1093/jxb/erx255	journal	August 2017
An atypical aspartic protease modulates lateral root development in Arabidopsis thaliana Soares, André; Niedermaier, Stefan; Faro, Rosário Journal of Experimental Botany, Vol. 70, Issue 7 https://doi.org/10.1093/jxb/erz059	journal	February 2019
E3 Ubiquitin Ligases: Ubiquitous Actors in Plant Development and Abiotic Stress Responses Shu, Kai; Yang, Wenyu Plant and Cell Physiology, Vol. 58, Issue 9 https://doi.org/10.1093/pcp/pcx071	journal	May 2017
Molecular machinery of auxin synthesis, secretion, and perception in the unicellular chlorophyte alga Chlorella sorokiniana UTEX 1230 Khasin, Maya; Cahoon, Rebecca R.; Nickerson, Kenneth W. PLOS ONE https://doi.org/10.1101/172833	journal	August 2017
Transcriptome-wide analysis of auxin-induced carotenoid accumulation in Chlorella microalgae Alsenani, Faisal; Wass, Taylor J.; Ma, Ruijuan BioRxiv https://doi.org/10.1101/334102	posted_content	January 2018
Selective auxin agonists induce specific AUX/IAA protein degradation to modulate plant development Vain, Thomas; Raggi, Sara; Ferro, Noel BioRxiv https://doi.org/10.1101/381608	posted_content	January 2018
Molecular framework for TIR1/AFB-Aux/IAA-dependent auxin sensing controlling adventitious rooting in Arabidopsis Lakehal, Abdellah; Chaabouni, Salma; Cavel, Emilie Molecular Plant https://doi.org/10.1101/518357	journal	January 2019
A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening Cramer, Grant R.; Cochetel, Noé; Ghan, Ryan BMC Plant Biology https://doi.org/10.1101/729236	journal	January 2019
A fuzzy encounter complex precedes formation of the fully-engaged TIR1-Aux/IAA auxin co-receptor system Ramans Harborough, Sigurd; Kalverda, Arnout P.; Thompson, Gary S. BioRxiv https://doi.org/10.1101/781922	posted_content	January 2019
ROP GTPase-mediated auxin signaling regulates pavement cell interdigitation in Arabidopsis thaliana: ROP Signaling Regulates Pavement Cell Interdigitation Lin, Deshu; Ren, Huibo; Fu, Ying Journal of Integrative Plant Biology, Vol. 57, Issue 1 https://doi.org/10.1111/jipb.12281	journal	October 2014
A leaf shape mutant provides insight into PINOID Serine/Threonine Kinase function in cucumber ( Cucumis sativus L.) Song, Mengfei; Cheng, Feng; Wang, Jing Journal of Integrative Plant Biology, Vol. 61, Issue 9 https://doi.org/10.1111/jipb.12739	journal	September 2019
Minimal auxin sensing levels in vegetative moss stem cells revealed by a ratiometric reporter Thelander, Mattias; Landberg, Katarina; Sundberg, Eva New Phytologist, Vol. 224, Issue 2 https://doi.org/10.1111/nph.16068	journal	June 2019
A Vitis vinifera basic helix-loop-helix transcription factor enhances plant cell size, vegetative biomass and reproductive yield Lim, Sung Don; Yim, Won Choel; Liu, Degao Plant Biotechnology Journal, Vol. 16, Issue 9 https://doi.org/10.1111/pbi.12898	journal	April 2018
Auxin response factors: Auxin response factors Chandler, John William Plant, Cell & Environment, Vol. 39, Issue 5 https://doi.org/10.1111/pce.12662	journal	January 2016
LBD18 uses a dual mode of a positive feedback loop to regulate ARF expression and transcriptional activity in Arabidopsis Pandey, Shashank K.; Lee, Han Woo; Kim, Min-Jung The Plant Journal, Vol. 95, Issue 2 https://doi.org/10.1111/tpj.13945	journal	June 2018
Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis Qiao, Lulu; Zheng, Liyu; Sheng, Cong The Plant Journal, Vol. 102, Issue 5 https://doi.org/10.1111/tpj.14677	journal	February 2020
Banana sRNAome and degradome identify microRNAs functioning in differential responses to temperature stress Zhu, Hong; Zhang, Yu; Tang, Ruifang BMC Genomics, Vol. 20, Issue 1 https://doi.org/10.1186/s12864-018-5395-1	journal	January 2019
Small RNA-seq reveals novel regulatory components for apomixis in Paspalum notatum Ortiz, Juan Pablo A.; Leblanc, Olivier; Rohr, Cristian BMC Genomics, Vol. 20, Issue 1 https://doi.org/10.1186/s12864-019-5881-0	journal	June 2019
Reduced expression of AtNUP62 nucleoporin gene affects auxin response in Arabidopsis Boeglin, Martin; Fuglsang, Anja Thoe; Luu, Doan-Trung BMC Plant Biology, Vol. 16, Issue 1 https://doi.org/10.1186/s12870-015-0695-y	journal	January 2016
Indole-3-butyric acid promotes adventitious rooting in Arabidopsis thaliana thin cell layers by conversion into indole-3-acetic acid and stimulation of anthranilate synthase activity Fattorini, L.; Veloccia, A.; Della Rovere, F. BMC Plant Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s12870-017-1071-x	journal	July 2017
New insights into the roles of cucumber TIR1 homologs and miR393 in regulating fruit/seed set development and leaf morphogenesis Xu, Jian; Li, Ji; Cui, Li BMC Plant Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s12870-017-1075-6	journal	July 2017
A sense of place: transcriptomics identifies environmental signatures in Cabernet Sauvignon berry skins in the late stages of ripening Cramer, Grant R.; Cochetel, Noé; Ghan, Ryan BMC Plant Biology, Vol. 20, Issue 1 https://doi.org/10.1186/s12870-020-2251-7	journal	January 2020
Mechanisms of auxin signaling Lavy, Meirav; Estelle, Mark Development, Vol. 143, Issue 18 https://doi.org/10.1242/dev.131870	journal	September 2016
Phospholipid composition and a polybasic motif determine D6 PROTEIN KINASE polar association with the plasma membrane and tropic responses Barbosa, Inês C. R.; Shikata, Hiromasa; Zourelidou, Melina Development, Vol. 143, Issue 24 https://doi.org/10.1242/dev.137117	journal	November 2016
The dynamic nature and regulation of the root clock Xuan, Wei; De Gernier, Hugues; Beeckman, Tom Development, Vol. 147, Issue 3 https://doi.org/10.1242/dev.181446	journal	February 2020
Spatial regularity control of phyllotaxis pattern generated by the mutual interaction between auxin and PIN1 Fujita, Hironori; Kawaguchi, Masayoshi PLOS Computational Biology, Vol. 14, Issue 4 https://doi.org/10.1371/journal.pcbi.1006065	journal	April 2018
Molecular machinery of auxin synthesis, secretion, and perception in the unicellular chlorophyte alga Chlorella sorokiniana UTEX 1230 Khasin, Maya; Cahoon, Rebecca R.; Nickerson, Kenneth W. PLOS ONE, Vol. 13, Issue 12 https://doi.org/10.1371/journal.pone.0205227	journal	December 2018
2,4-D Past, Present, and Future: A Review Peterson, Mark A.; McMaster, Steve A.; Riechers, Dean E. Weed Technology, Vol. 30, Issue 2 https://doi.org/10.1614/wt-d-15-00131.1	journal	June 2016
Mitochonic Acid 5 Binds Mitochondria and Ameliorates Renal Tubular and Cardiac Myocyte Damage Suzuki, Takehiro; Yamaguchi, Hiroaki; Kikusato, Motoi Journal of the American Society of Nephrology, Vol. 27, Issue 7 https://doi.org/10.1681/asn.2015060623	journal	November 2015
A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening. Cramer, Grant R.; Cochetel, Noe; Ghan, Ryan BMC Plant Biology https://doi.org/10.21203/rs.2.10248/v1	journal	January 2020
A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening. Cramer, Grant R.; Cochetel, Noe; Ghan, Ryan BMC Plant Biology https://doi.org/10.21203/rs.2.10248/v2	journal	January 2020
A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening. Cramer, Grant R.; Cochetel, Noe; Ghan, Ryan BMC Plant Biology https://doi.org/10.21203/rs.2.10248/v4	journal	January 2020
A Review of Auxin Response Factors (ARFs) in Plants Li, Si-Bei; Xie, Zong-Zhou; Hu, Chun-Gen Frontiers in Plant Science, Vol. 7 https://doi.org/10.3389/fpls.2016.00047	journal	February 2016
Target of Rapamycin Is a Key Player for Auxin Signaling Transduction in Arabidopsis Deng, Kexuan; Yu, Lihua; Zheng, Xianzhe Frontiers in Plant Science, Vol. 7 https://doi.org/10.3389/fpls.2016.00291	journal	March 2016
Developmental Roles of AUX1/LAX Auxin Influx Carriers in Plants Swarup, Ranjan; Bhosale, Rahul Frontiers in Plant Science, Vol. 10 https://doi.org/10.3389/fpls.2019.01306	journal	October 2019
Genome-Wide Analysis of Auxin Receptor Family Genes in Brassica juncea var. tumida Cai, Zhaoming; Zeng, De-er; Liao, Jingjing Genes, Vol. 10, Issue 2 https://doi.org/10.3390/genes10020165	journal	February 2019
Aux/IAA Gene Family in Plants: Molecular Structure, Regulation, and Function Luo, Jie; Zhou, Jing-Jing; Zhang, Jin-Zhi International Journal of Molecular Sciences, Vol. 19, Issue 1 https://doi.org/10.3390/ijms19010259	journal	January 2018

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