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Title: Crystal Structure of PKG I:cGMP Complex Reveals a cGMP-Mediated Dimeric Interface that Facilitates cGMP-Induced Activation

Abstract

Cyclic guanosine monophosphate (cGMP)-dependent protein kinase (PKG) is a key regulator of smooth muscle and vascular tone and represents an important drug target for treating hypertensive diseases and erectile dysfunction. Despite its importance, its activation mechanism is not fully understood. To understand the activation mechanism, we determined a 2.5 Å crystal structure of the PKG I regulatory (R) domain bound with cGMP, which represents the activated state. Here, although we used a monomeric domain for crystallization, the structure reveals that two R domains form a symmetric dimer where the cGMP bound at high-affinity pockets provide critical dimeric contacts. Small-angle X-ray scattering and mutagenesis support this dimer model, suggesting that the dimer interface modulates kinase activation. Finally, structural comparison with the homologous cyclic AMP-dependent protein kinase reveals that PKG is drastically different from protein kinase A in its active conformation, suggesting a novel activation mechanism for PKG.

Authors:
; ; ; ; ; ; ;
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES); National Institutes of Health (NIH); King Abdullah University of Science and Technology (KAUST); European Union (EU)
OSTI Identifier:
1355066
Alternate Identifier(s):
OSTI ID: 1379328
Grant/Contract Number:  
AC02-05CH11231; R01 GM090161; R21 HL111953; 241481
Resource Type:
Published Article
Journal Name:
Structure
Additional Journal Information:
Journal Name: Structure Journal Volume: 24 Journal Issue: 5; Journal ID: ISSN 0969-2126
Publisher:
Elsevier
Country of Publication:
United Kingdom
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES; NO-cGMP signaling; second messengers; cGMP-dependent protein kinase; cyclic nucleotide-binding domain; allosteric activation; crystal structure; small-angle X-ray scattering

Citation Formats

Kim, Jeong Joo, Lorenz, Robin, Arold, Stefan T., Reger, Albert S., Sankaran, Banumathi, Casteel, Darren E., Herberg, Friedrich W., and Kim, Choel. Crystal Structure of PKG I:cGMP Complex Reveals a cGMP-Mediated Dimeric Interface that Facilitates cGMP-Induced Activation. United Kingdom: N. p., 2016. Web. doi:10.1016/j.str.2016.03.009.
Kim, Jeong Joo, Lorenz, Robin, Arold, Stefan T., Reger, Albert S., Sankaran, Banumathi, Casteel, Darren E., Herberg, Friedrich W., & Kim, Choel. Crystal Structure of PKG I:cGMP Complex Reveals a cGMP-Mediated Dimeric Interface that Facilitates cGMP-Induced Activation. United Kingdom. https://doi.org/10.1016/j.str.2016.03.009
Kim, Jeong Joo, Lorenz, Robin, Arold, Stefan T., Reger, Albert S., Sankaran, Banumathi, Casteel, Darren E., Herberg, Friedrich W., and Kim, Choel. Sun . "Crystal Structure of PKG I:cGMP Complex Reveals a cGMP-Mediated Dimeric Interface that Facilitates cGMP-Induced Activation". United Kingdom. https://doi.org/10.1016/j.str.2016.03.009.
@article{osti_1355066,
title = {Crystal Structure of PKG I:cGMP Complex Reveals a cGMP-Mediated Dimeric Interface that Facilitates cGMP-Induced Activation},
author = {Kim, Jeong Joo and Lorenz, Robin and Arold, Stefan T. and Reger, Albert S. and Sankaran, Banumathi and Casteel, Darren E. and Herberg, Friedrich W. and Kim, Choel},
abstractNote = {Cyclic guanosine monophosphate (cGMP)-dependent protein kinase (PKG) is a key regulator of smooth muscle and vascular tone and represents an important drug target for treating hypertensive diseases and erectile dysfunction. Despite its importance, its activation mechanism is not fully understood. To understand the activation mechanism, we determined a 2.5 Å crystal structure of the PKG I regulatory (R) domain bound with cGMP, which represents the activated state. Here, although we used a monomeric domain for crystallization, the structure reveals that two R domains form a symmetric dimer where the cGMP bound at high-affinity pockets provide critical dimeric contacts. Small-angle X-ray scattering and mutagenesis support this dimer model, suggesting that the dimer interface modulates kinase activation. Finally, structural comparison with the homologous cyclic AMP-dependent protein kinase reveals that PKG is drastically different from protein kinase A in its active conformation, suggesting a novel activation mechanism for PKG.},
doi = {10.1016/j.str.2016.03.009},
journal = {Structure},
number = 5,
volume = 24,
place = {United Kingdom},
year = {Sun May 01 00:00:00 EDT 2016},
month = {Sun May 01 00:00:00 EDT 2016}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1016/j.str.2016.03.009

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Cited by: 30 works
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Works referencing / citing this record:

Structures of the cGMP-dependent protein kinase in malaria parasites reveal a unique structural relay mechanism for activation
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  • El Bakkouri, Majida; Kouidmi, Imène; Wernimont, Amy K.
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Structures of the cGMP-dependent protein kinase in malaria parasites reveal a unique structural relay mechanism for activation
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Nucleoside analogue activators of cyclic AMP-independent protein kinase A of Trypanosoma
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An N-terminally truncated form of cyclic GMP–dependent protein kinase Iα (PKG Iα) is monomeric and autoinhibited and provides a model for activation
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  • Moon, Thomas M.; Sheehe, Jessica L.; Nukareddy, Praveena
  • Journal of Biological Chemistry, Vol. 293, Issue 21
  • DOI: 10.1074/jbc.ra117.000647

Oxidation of cysteine 117 stimulates constitutive activation of the type Iα cGMP-dependent protein kinase
journal, September 2018

  • Sheehe, Jessica L.; Bonev, Adrian D.; Schmoker, Anna M.
  • Journal of Biological Chemistry, Vol. 293, Issue 43
  • DOI: 10.1074/jbc.ra118.004363

Correction to: Crystal structure of PKG Iβ holoenzyme reveals a trans‑inhibiting dimer assembly
journal, January 2020

  • Kim, Choel; Sharma, Rajesh; Casteel, Darren E.
  • Journal of Translational Medicine, Vol. 18, Issue 1
  • DOI: 10.1186/s12967-019-02198-7

Structures of the cGMP-dependent protein kinase in malaria parasites reveal a unique structural relay mechanism for activation.
text, January 2020